CSPI03G04020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr3: 3322435 .. 3323160 (-)
RNA-Seq Expression	CSPI03G04020
Synteny	CSPI03G04020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATATACAATTTTCGAGAATCAGCTTGCATTTGTTAAAGCAGACGCTATTCTTATGGCCAATGAAGCAGTTGATTTATGGAAAGCTAGCAAAACAAAAGGATTTGTCATAAAACTAGACATTGAAAAGGCTTTCGACAAGATAAGTTGGAGTATTATTAACTACATGCTGTGTGTAAAAAGTTTCCTTTTCAAATGGAGAAAGTGGATCAAAGCTTGTATTAGCAATGTGGTTTACTCCATCCTCATCAATGGCAAGCCCCATGGGCGAATCCCTGCTCACAGAGGCATTCATCAAGGTGATCTCATTTCTCCCTTTATTTTTGTTCTTGCCATGGACTATCTAAGTAGATTGTTATCCTAGCTGGAAAAAAGCAACTCGATAAAGGGAGTCAACTTCAACAACAATTATAGCTTAACCCACATTCTTTTTGCAGATGATATCCTTCTCTTTGTTGAACATAATGACATTTCTCTGGCAAACTTGAGGGTGACTTTAACTCTATTTGAAAAAGCTTCAGAGCTAAACATAAATTTATCAAAGTCCACTATATGTCCCATAAACATTTCAGATGACCGTGCTAGAGAAGTTGCTGATAATTGGGATATTTCTATTTATCACCTGTCGATCCTTTATCTTGGAGTCCCTCTAGGAGGCAACCCAAAGTCAACCTCCTTTTGGGAAAAGGTTGATATCAAAATCAACAAGAAGATCAATAACTGA

mRNA sequence

ATGCCATATACAATTTTCGAGAATCAGCTTGCATTTGTTAAAGCAGACGCTATTCTTATGGCCAATGAAGCAGTTGATTTATGGAAAGCTAGCAAAACAAAAGGATTTGTCATAAAACTAGACATTGAAAAGGCTTTCGACAAGATAAGTTGGAGTATTATTAACTACATGCTGTGTGTAAAAAGTTTCCTTTTCAAATGGAGAAAGTGGATCAAAGCTTGTATTAGCAATGTGGTTTACTCCATCCTCATCAATGGCAAGCCCCATGGGCGAATCCCTGCTCACAGAGGCATTCATCAAGGTGATCTCATTTCTCCCTTTATTTTTGTTCTTGCCATGGACTATCTAAATGATATCCTTCTCTTTGTTGAACATAATGACATTTCTCTGGCAAACTTGAGGGTGACTTTAACTCTATTTGAAAAAGCTTCAGAGCTAAACATAAATTTATCAAAGTCCACTATATGTCCCATAAACATTTCAGATGACCGTGCTAGAGAAGTTGCTGATAATTGGGATATTTCTATTTATCACCTGTCGATCCTTTATCTTGGAGTCCCTCTAGGAGGCAACCCAAAGTCAACCTCCTTTTGGGAAAAGGTTGATATCAAAATCAACAAGAAGATCAATAACTGA

Coding sequence (CDS)

ATGCCATATACAATTTTCGAGAATCAGCTTGCATTTGTTAAAGCAGACGCTATTCTTATGGCCAATGAAGCAGTTGATTTATGGAAAGCTAGCAAAACAAAAGGATTTGTCATAAAACTAGACATTGAAAAGGCTTTCGACAAGATAAGTTGGAGTATTATTAACTACATGCTGTGTGTAAAAAGTTTCCTTTTCAAATGGAGAAAGTGGATCAAAGCTTGTATTAGCAATGTGGTTTACTCCATCCTCATCAATGGCAAGCCCCATGGGCGAATCCCTGCTCACAGAGGCATTCATCAAGGTGATCTCATTTCTCCCTTTATTTTTGTTCTTGCCATGGACTATCTAAATGATATCCTTCTCTTTGTTGAACATAATGACATTTCTCTGGCAAACTTGAGGGTGACTTTAACTCTATTTGAAAAAGCTTCAGAGCTAAACATAAATTTATCAAAGTCCACTATATGTCCCATAAACATTTCAGATGACCGTGCTAGAGAAGTTGCTGATAATTGGGATATTTCTATTTATCACCTGTCGATCCTTTATCTTGGAGTCCCTCTAGGAGGCAACCCAAAGTCAACCTCCTTTTGGGAAAAGGTTGATATCAAAATCAACAAGAAGATCAATAACTGA

Protein sequence

MPYTIFENQLAFVKADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINYMLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYLNDILLFVEHNDISLANLRVTLTLFEKASELNINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKINKKINN*

Homology

[Close]

BLAST of CSPI03G04020 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.4e-06
Identity = 45/178 (25.28%), Postives = 72/178 (40.45%), Query Frame = 0


Query: 37  VIKLDIEKAFDKISWSIINYMLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHR 96
           +I LD EKAFDKI    +  +L        +   IKA  S  V +I +NG+    IP   
Sbjct: 603 IISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKS 662

Query: 97  GIHQGDLISPFIFVLAMDYL--------------------------NDILLFVEHNDISL 156
           G  QG  +SP++F + ++ L                          +D+++++     S 
Sbjct: 663 GTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLLADDMIVYISDPKNST 722

Query: 157 ANLRVTLTLFEKASELNINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPL 189
             L   +  F +     IN +KS       +    +E+ +    SI   +I YLGV L
Sbjct: 723 RELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTL 780

[Close]

BLAST of CSPI03G04020 vs. ExPASy Swiss-Prot
Match: Q03274 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.1e-04
Identity = 44/174 (25.29%), Postives = 73/174 (41.95%), Query Frame = 0


Query: 9   QLAFVKADAILMANEAVDLWKASKTKG----FVIKLDIEKAFDKISWSIINYMLCVKSFL 68
           Q  + + D  L+ +  +D + +S+ +      V+ LD+ KAFD +S S I   L      
Sbjct: 107 QKGYARIDGTLVNSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGID 166

Query: 69  FKWRKWIKACISNVVYSILIN-GKPHGRIPAHRGIHQGDLISPFIFVLAMDYL------- 128
                +I   +S+   +I +  G    +I   RG+ QGD +SPF+F   +D L       
Sbjct: 167 EGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQST 226

Query: 129 -----------------NDILLFVEHNDISLANLRVTLTLFEKASELNINLSKS 154
                             D LL +E ND+ L     T+  F +   +++N  KS
Sbjct: 227 PGIGGTIGEEKIPVLAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAKKS 280

[Close]

BLAST of CSPI03G04020 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.9e-65
Identity = 133/245 (54.29%), Postives = 164/245 (66.94%), Query Frame = 0


Query: 1   MPYTIFENQLAFVK----ADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI ENQLAFVK     DAILMANEAVD WK  K KGF++KLDIEKAFD ++W  I++
Sbjct: 379 LPNTISENQLAFVKNRQITDAILMANEAVDFWKVKKIKGFILKLDIEKAFDNLNWDFIDF 438

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           +L  K+F   WRKWI+ CISNV YSI++NG+P GRI A+RG+ QGD +SPF+FV+AMDYL
Sbjct: 439 VLEKKNFPILWRKWIRGCISNVTYSIIVNGRPQGRIKANRGLRQGDPLSPFLFVIAMDYL 498

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +DILLF+E ND  L NLR+ L+LFE+AS L
Sbjct: 499 SRLLSHLEITGAIKGVSFSSNCNISHILFADDILLFIEDNDFFLNNLRMALSLFERASGL 558

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 212
            INL KS + P+N+S+ RA+E A  W IS   L + YLGVPLGGNPKS  FW  V+ KI 
Sbjct: 559 KINLLKSALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVEEKIQ 618

[Close]

BLAST of CSPI03G04020 vs. ExPASy TrEMBL
Match: A0A5D3BUZ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00050 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.6e-65
Identity = 131/245 (53.47%), Postives = 164/245 (66.94%), Query Frame = 0


Query: 1   MPYTIFENQLAFVK----ADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI  NQLAFVK     DAILMANEA+D WK  K KGF++KLDIEKAFD ++W  I++
Sbjct: 379 LPDTISGNQLAFVKNRQITDAILMANEALDFWKVKKIKGFILKLDIEKAFDNLNWDFIDF 438

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           +L  K+F   WRKWI+ CISNV YS+++NG+P GRI A+RG+ QGD +SPF+FV+AMDYL
Sbjct: 439 VLEKKNFPNLWRKWIRGCISNVTYSVIVNGRPQGRIKANRGLRQGDPLSPFLFVIAMDYL 498

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +DILLF+E ND  L NLR+ L+LFEKAS L
Sbjct: 499 SRLLSHLESSGAIKGVSLNSNCNISHILFADDILLFIEDNDYFLKNLRMALSLFEKASGL 558

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 212
            INL KS + P+N+S +RA+E A  W IS + L + YLGVPLGGNPKS  FW  V+ KI 
Sbjct: 559 KINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVEDKIQ 618

[Close]

BLAST of CSPI03G04020 vs. ExPASy TrEMBL
Match: A0A5D3C3D0 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002020 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.6e-64
Identity = 132/245 (53.88%), Postives = 162/245 (66.12%), Query Frame = 0


Query: 1   MPYTIFENQLAFVK----ADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI  NQLAFVK     DAILMANEAVD WK  K KGF++KLDIEK FD ++W  INY
Sbjct: 61  LPDTISGNQLAFVKNRQITDAILMANEAVDYWKVKKIKGFILKLDIEKDFDNLNWDFINY 120

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           +   K+F   WRKWI+ CISNV YS++ING+P GRI A+RG+ QGD +SPF+FV+AMDYL
Sbjct: 121 VREKKNFPNSWRKWIRECISNVTYSVIINGRPQGRIKANRGLRQGDPLSPFLFVIAMDYL 180

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +DILLF+E ND  L NLR+ L+LFE+AS L
Sbjct: 181 SRLLSHLESSGAIKGVSLNSNCNISYILFADDILLFIEDNDCFLNNLRMALSLFERASGL 240

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 212
            INL KS + P+N+S +RA+E A  W IS + L + YLGVPLGGNPKS  FW  V+ KI 
Sbjct: 241 KINLLKSALVPMNVSLNRAKECASFWGISFHSLPLSYLGVPLGGNPKSNLFWRNVEDKIQ 300

[Close]

BLAST of CSPI03G04020 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.8e-63
Identity = 137/244 (56.15%), Postives = 161/244 (65.98%), Query Frame = 0


Query: 1    MPYTIFENQLAFVKA----DAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
            +P TI ENQ+AF+K     DAIL+ANEA+D WK  K KGFV+KLDIEKAFDKISWS I+Y
Sbjct: 1145 LPDTIAENQMAFIKGRQINDAILIANEAIDTWKQRKIKGFVLKLDIEKAFDKISWSFIDY 1204

Query: 61   MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
            ML  K F  KWRKWIKACISNV YSIL+NG P GRI A RGI QGD +SPFIFVLAMDYL
Sbjct: 1205 MLAKKHFPHKWRKWIKACISNVQYSILLNGAPKGRIKAERGIRQGDPLSPFIFVLAMDYL 1264

Query: 121  ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                          +D+L+FVE N+  L NL++ LTLFEKAS L
Sbjct: 1265 SRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEKASGL 1324

Query: 181  NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 211
              N SKSTI PINIS  R  ++A  +      L + YLGVPLGGNP+S SFW++    I+
Sbjct: 1325 TFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTIECIH 1384

[Close]

BLAST of CSPI03G04020 vs. ExPASy TrEMBL
Match: A0A5A7TQA8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00190 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.8e-63
Identity = 137/244 (56.15%), Postives = 161/244 (65.98%), Query Frame = 0


Query: 1   MPYTIFENQLAFVKA----DAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI ENQ+AF+K     DAIL+ANEA+D WK  K KGFV+KLDIEKAFDKISWS I+Y
Sbjct: 13  LPDTIAENQMAFIKGRQINDAILIANEAIDTWKQRKIKGFVLKLDIEKAFDKISWSFIDY 72

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           ML  K F  KWRKWIKACISNV YSIL+NG P GRI A RGI QGD +SPFIFVLAMDYL
Sbjct: 73  MLAKKHFPHKWRKWIKACISNVQYSILLNGAPKGRIKAERGIRQGDPLSPFIFVLAMDYL 132

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +D+L+FVE N+  L NL++ LTLFEKAS L
Sbjct: 133 SRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEKASGL 192

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 211
             N SKSTI PINIS  R  ++A  +      L + YLGVPLGGNP+S SFW++    I+
Sbjct: 193 TFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTIECIH 252

[Close]

BLAST of CSPI03G04020 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 4.0e-65
Identity = 133/245 (54.29%), Postives = 164/245 (66.94%), Query Frame = 0


Query: 1   MPYTIFENQLAFVK----ADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI ENQLAFVK     DAILMANEAVD WK  K KGF++KLDIEKAFD ++W  I++
Sbjct: 379 LPNTISENQLAFVKNRQITDAILMANEAVDFWKVKKIKGFILKLDIEKAFDNLNWDFIDF 438

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           +L  K+F   WRKWI+ CISNV YSI++NG+P GRI A+RG+ QGD +SPF+FV+AMDYL
Sbjct: 439 VLEKKNFPILWRKWIRGCISNVTYSIIVNGRPQGRIKANRGLRQGDPLSPFLFVIAMDYL 498

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +DILLF+E ND  L NLR+ L+LFE+AS L
Sbjct: 499 SRLLSHLEITGAIKGVSFSSNCNISHILFADDILLFIEDNDFFLNNLRMALSLFERASGL 558

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 212
            INL KS + P+N+S+ RA+E A  W IS   L + YLGVPLGGNPKS  FW  V+ KI 
Sbjct: 559 KINLLKSALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVEEKIQ 618

[Close]

BLAST of CSPI03G04020 vs. NCBI nr
Match: KAA0037445.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01919.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-64
Identity = 131/245 (53.47%), Postives = 164/245 (66.94%), Query Frame = 0


Query: 1   MPYTIFENQLAFVK----ADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI  NQLAFVK     DAILMANEA+D WK  K KGF++KLDIEKAFD ++W  I++
Sbjct: 379 LPDTISGNQLAFVKNRQITDAILMANEALDFWKVKKIKGFILKLDIEKAFDNLNWDFIDF 438

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           +L  K+F   WRKWI+ CISNV YS+++NG+P GRI A+RG+ QGD +SPF+FV+AMDYL
Sbjct: 439 VLEKKNFPNLWRKWIRGCISNVTYSVIVNGRPQGRIKANRGLRQGDPLSPFLFVIAMDYL 498

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +DILLF+E ND  L NLR+ L+LFEKAS L
Sbjct: 499 SRLLSHLESSGAIKGVSLNSNCNISHILFADDILLFIEDNDYFLKNLRMALSLFEKASGL 558

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 212
            INL KS + P+N+S +RA+E A  W IS + L + YLGVPLGGNPKS  FW  V+ KI 
Sbjct: 559 KINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVEDKIQ 618

[Close]

BLAST of CSPI03G04020 vs. NCBI nr
Match: TYK05718.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 7.5e-64
Identity = 132/245 (53.88%), Postives = 162/245 (66.12%), Query Frame = 0


Query: 1   MPYTIFENQLAFVK----ADAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI  NQLAFVK     DAILMANEAVD WK  K KGF++KLDIEK FD ++W  INY
Sbjct: 61  LPDTISGNQLAFVKNRQITDAILMANEAVDYWKVKKIKGFILKLDIEKDFDNLNWDFINY 120

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           +   K+F   WRKWI+ CISNV YS++ING+P GRI A+RG+ QGD +SPF+FV+AMDYL
Sbjct: 121 VREKKNFPNSWRKWIRECISNVTYSVIINGRPQGRIKANRGLRQGDPLSPFLFVIAMDYL 180

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +DILLF+E ND  L NLR+ L+LFE+AS L
Sbjct: 181 SRLLSHLESSGAIKGVSLNSNCNISYILFADDILLFIEDNDCFLNNLRMALSLFERASGL 240

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 212
            INL KS + P+N+S +RA+E A  W IS + L + YLGVPLGGNPKS  FW  V+ KI 
Sbjct: 241 KINLLKSALVPMNVSLNRAKECASFWGISFHSLPLSYLGVPLGGNPKSNLFWRNVEDKIQ 300

[Close]

BLAST of CSPI03G04020 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 3.7e-63
Identity = 137/244 (56.15%), Postives = 161/244 (65.98%), Query Frame = 0


Query: 1    MPYTIFENQLAFVKA----DAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
            +P TI ENQ+AF+K     DAIL+ANEA+D WK  K KGFV+KLDIEKAFDKISWS I+Y
Sbjct: 1145 LPDTIAENQMAFIKGRQINDAILIANEAIDTWKQRKIKGFVLKLDIEKAFDKISWSFIDY 1204

Query: 61   MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
            ML  K F  KWRKWIKACISNV YSIL+NG P GRI A RGI QGD +SPFIFVLAMDYL
Sbjct: 1205 MLAKKHFPHKWRKWIKACISNVQYSILLNGAPKGRIKAERGIRQGDPLSPFIFVLAMDYL 1264

Query: 121  ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                          +D+L+FVE N+  L NL++ LTLFEKAS L
Sbjct: 1265 SRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEKASGL 1324

Query: 181  NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 211
              N SKSTI PINIS  R  ++A  +      L + YLGVPLGGNP+S SFW++    I+
Sbjct: 1325 TFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTIECIH 1384

[Close]

BLAST of CSPI03G04020 vs. NCBI nr
Match: KAA0045532.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 3.7e-63
Identity = 137/244 (56.15%), Postives = 161/244 (65.98%), Query Frame = 0


Query: 1   MPYTIFENQLAFVKA----DAILMANEAVDLWKASKTKGFVIKLDIEKAFDKISWSIINY 60
           +P TI ENQ+AF+K     DAIL+ANEA+D WK  K KGFV+KLDIEKAFDKISWS I+Y
Sbjct: 13  LPDTIAENQMAFIKGRQINDAILIANEAIDTWKQRKIKGFVLKLDIEKAFDKISWSFIDY 72

Query: 61  MLCVKSFLFKWRKWIKACISNVVYSILINGKPHGRIPAHRGIHQGDLISPFIFVLAMDYL 120
           ML  K F  KWRKWIKACISNV YSIL+NG P GRI A RGI QGD +SPFIFVLAMDYL
Sbjct: 73  MLAKKHFPHKWRKWIKACISNVQYSILLNGAPKGRIKAERGIRQGDPLSPFIFVLAMDYL 132

Query: 121 ------------------------------NDILLFVEHNDISLANLRVTLTLFEKASEL 180
                                         +D+L+FVE N+  L NL++ LTLFEKAS L
Sbjct: 133 SRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEKASGL 192

Query: 181 NINLSKSTICPINISDDRAREVADNWDISIYHLSILYLGVPLGGNPKSTSFWEKVDIKIN 211
             N SKSTI PINIS  R  ++A  +      L + YLGVPLGGNP+S SFW++    I+
Sbjct: 193 TFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTIECIH 252

The following BLAST results are available for this feature:

BLAST of CSPI03G04020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11369	7.4e-06	25.28	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
Q03274	9.1e-04	25.29	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fra...	[more]

BLAST of CSPI03G04020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTK1	1.9e-65	54.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BUZ3	9.6e-65	53.47	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C3D0	3.6e-64	53.88	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	1.8e-63	56.15	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TQA8	1.8e-63	56.15	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CSPI03G04020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046762.1	4.0e-65	54.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0037445.1	2.0e-64	53.47	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK019...	[more]
TYK05718.1	7.5e-64	53.88	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0057507.1	3.7e-63	56.15	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0045532.1	3.7e-63	56.15	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G04020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 6..187 e-value: 6.1E-17 score: 61.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..188 score: 9.511086
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 2..210
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 2..210
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 24..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04020.1	CSPI03G04020.1	mRNA