CSPI02G04480.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI02G04480.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 3229571 .. 3229858 (+)
Sequence length288
RNA-Seq ExpressionCSPI02G04480.1
SyntenyCSPI02G04480.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATTTTTTTCATCGATCAATCAAGAGTTAGTTCAACAGCAGCTACAAGACGATACACAGGGAAAATGGAGAATACCGGGAAAAGTCTAGATGCTTGGTGAAGCTCTACAATCGAACTCGTTTTCGAAAAAGCAAAACAAAAAAAAAAAAGCTTATTGTAAGAGCGAAAAGCGCAATAACGAGAGGCTGAGACGCCGGACAGGAAGGCGGAGCAGAACGGGGCCGGCGATGGTCCGTGGAATGGTACATTTACGTGCAAATGTTAATCCTGGATTGGTTGCGTTGTAG

mRNA sequence

GCATTTTTTTCATCGATCAATCAAGAGTTAGTTCAACAGCAGCTACAAGACGATACACAGGGAAAATGGAGAATACCGGGAAAAGTCTAGATGCTTGGTGAAGCTCTACAATCGAACTCGTTTTCGAAAAAGCAAAACAAAAAAAAAAAAGCTTATTGTAAGAGCGAAAAGCGCAATAACGAGAGGCTGAGACGCCGGACAGGAAGGCGGAGCAGAACGGGGCCGGCGATGGTCCGTGGAATGGTACATTTACGTGCAAATGTTAATCCTGGATTGGTTGCGTTGTAG

Coding sequence (CDS)

ATGCTTGGTGAAGCTCTACAATCGAACTCGTTTTCGAAAAAGCAAAACAAAAAAAAAAAAGCTTATTGTAAGAGCGAAAAGCGCAATAACGAGAGGCTGAGACGCCGGACAGGAAGGCGGAGCAGAACGGGGCCGGCGATGGTCCGTGGAATGGTACATTTACGTGCAAATGTTAATCCTGGATTGGTTGCGTTGTAG

Protein sequence

MLGEALQSNSFSKKQNKKKKAYCKSEKRNNERLRRRTGRRSRTGPAMVRGMVHLRANVNPGLVAL*
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G04480CSPI02G04480gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G04480.1.utr5p1CSPI02G04480.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G04480.1.cds1CSPI02G04480.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G04480.1CSPI02G04480.1-proteinpolypeptide