CSPI01G14490 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14490
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Collagen triple helix repeat
Location	Chr1: 10144509 .. 10145430 (+)
RNA-Seq Expression	CSPI01G14490
Synteny	CSPI01G14490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTGATGTTCTCCTTCGATTTAACATTATTTGTCTGGTATTTATCAAAATAATACATAGAGTAACACCGATAATTTTCGCTCATAGTAATTTTTTATTTAAATATGACTTTTTAAAGTTACATAATAGTAGCTTACATGATTGATTAGAAAGAACTTGAAGCAAATAAAATTCCACCAGGAAACCTCATGCTTTAAACTTCCAGTCTAGAGAAGCTCCACTACTTTGATAACGCACACTAGTATATTGTCAAAGGTGGAATACTGAGGGGAGACGCATTGATTCAAGGGAAATATAAGGAGGAAATGGATAATAGTATTATTTGGAGCGTACTAGGGAGTGGAAGCAATGTTCGGGATATTAGGGACTGGAATATTAGGAAGGGGAGGCAAATCGGTGGATGGAATAGAAGGAACGATCAGCGGGATAGTAGTAGGTGGAACAATATTAGGGATGAATGGAATCGAAGACAATGAAGGAACTCTCGGGATAATGGGTGGAAGGTTAGGGACGATTGGAGGTGAAGGCAATGAAGGAACTCCTGGGATAATGGGTGGAAGATTAGGGATGGTTGGAAGCGAAGGCAATGAAGGAATTCTCGGGATAATGGGTGGAAGATTAGGGACGATTGGAGGCAAAGGCAATGAAGGAACTCTCGGGATAATGGGTGGAAGATTAGGGGCGATTGGAAGTGAAGGAATTTTTGGGATAATGGGTGAAAGGTCGGGGATGATTGGAAATGAAGGCAATGAAGGAACTCCCGAGATAACAGATGGAATGGAAGGAAATAATTGTGGGAGATAACGCCGTGCTTCAGTCAGTTCAATATTGGTTGATGATAGACCCATAAATAAAAGGACAAGAATTAGAAAGCTTTTATTGGAAGCCATGTTAGATAAATGTTTGCTTCAACGCTTACAAT

mRNA sequence

GTGTGATGTTCTCCTTCGATTTAACATTATTTGTCTGGTATTTATCAAAATAATACATAGAGTAACACCGATAATTTTCGCTCATAGTAATTTTTTATTTAAATATGACTTTTTAAAGTTACATAATAGTAGCTTACATGATTGATTAGAAAGAACTTGAAGCAAATAAAATTCCACCAGGAAACCTCATGCTTTAAACTTCCAGTCTAGAGAAGCTCCACTACTTTGATAACGCACACTAGTATATTGTCAAAGGTGGAATACTGAGGGGAGACGCATTGATTCAAGGGAAATATAAGGAGGAAATGGATAATAGTATTATTTGGAGCGTACTAGGGAGTGGAAGCAATGTTCGGGATATTAGGGACTGGAATATTAGGAAGGGGAGGCAAATCGGTGGATGGAATAGAAGGAACGATCAGCGGGATAGTAGTAGGTGGAACAATATTAGGGATGAATGGAATCGAAGACAATGAAGGAACTCTCGGGATAATGGGTGGAAGGTTAGGGACGATTGGAGGTGAAGGCAATGAAGGAACTCCTGGGATAATGGGTGGAAGATTAGGGATGGTTGGAAGCGAAGGCAATGAAGGAATTCTCGGGATAATGGGTGGAAGATTAGGGACGATTGGAGGCAAAGGCAATGAAGGAACTCTCGGGATAATGGGTGGAAGATTAGGGGCGATTGGAAGTGAAGGAATTTTTGGGATAATGGGTGAAAGGTCGGGGATGATTGGAAATGAAGGCAATGAAGGAACTCCCGAGATAACAGATGGAATGGAAGGAAATAATTGTGGGAGATAACGCCGTGCTTCAGTCAGTTCAATATTGGTTGATGATAGACCCATAAATAAAAGGACAAGAATTAGAAAGCTTTTATTGGAAGCCATGTTAGATAAATGTTTGCTTCAACGCTTACAAT

Coding sequence (CDS)

ATGTTCGGGATATTAGGGACTGGAATATTAGGAAGGGGAGGCAAATCGGTGGATGGAATAGAAGGAACGATCAGCGGGATAGTAGTAGGTGGAACAATATTAGGGATGAATGGAATCGAAGACAATGAAGGAACTCTCGGGATAATGGGTGGAAGGTTAGGGACGATTGGAGGTGAAGGCAATGAAGGAACTCCTGGGATAATGGGTGGAAGATTAGGGATGGTTGGAAGCGAAGGCAATGAAGGAATTCTCGGGATAATGGGTGGAAGATTAGGGACGATTGGAGGCAAAGGCAATGAAGGAACTCTCGGGATAATGGGTGGAAGATTAGGGGCGATTGGAAGTGAAGGAATTTTTGGGATAATGGGTGAAAGGTCGGGGATGATTGGAAATGAAGGCAATGAAGGAACTCCCGAGATAACAGATGGAATGGAAGGAAATAATTGTGGGAGATAA

Protein sequence

MFGILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEGNEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGSEGIFGIMGERSGMIGNEGNEGTPEITDGMEGNNCGR*

Homology

[Close]

BLAST of CSPI01G14490 vs. ExPASy Swiss-Prot
Match: Q5UPS7 (Collagen-like protein 4 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R240 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.7e-05
Identity = 62/161 (38.51%), Postives = 84/161 (52.17%), Query Frame = 0


Query: 8   GILG-RGGKSVDGIEGTISGIVVGGTI--LGMNGIEDNEGTLGIMGGRLGTIGGEGNEGT 67
           G +G RG K   G +G I      G I  +G NG   ++G  G M G  G+ G +G++GT
Sbjct: 74  GFIGLRGSKGDTGNKGEIGDNGENGDIGQIGDNGSIGSKGIKG-MNGFNGSKGIKGDKGT 133

Query: 68  PGIMG----------GRLGMVGSEGNEGILGIMG-----GRLGTIGGKGNEGTLGIMG-- 127
            GI G          G+ G  GS+G++GI GI G     G  GT G  G  GT G+ G  
Sbjct: 134 DGIKGDKGQDNFGSKGQKGETGSKGDDGIKGITGSKGFKGDPGTKGENGINGTKGLKGSQ 193

Query: 128 GRLGAIGSEGIFGIMGERSGMIGNEGNEGTPEITDGMEGNN 149
           G LG  G +GI GI+G + G+ G+ GN+G     DG++G N
Sbjct: 194 GDLGTKGDDGIKGIIGSK-GIKGDPGNKG----EDGIKGTN 228

[Close]

BLAST of CSPI01G14490 vs. ExPASy Swiss-Prot
Match: P9WIF5 (PE-PGRS family protein PE_PGRS33 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=PE_PGRS33 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.5e-04
Identity = 51/147 (34.69%), Postives = 65/147 (44.22%), Query Frame = 0


Query: 3   GILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEGNE 62
           G  G G++G GG    G    + G    G   G  G+    G  G  GG  G + G G  
Sbjct: 324 GAGGIGLVGNGGAGGSGGSALLWG---DGGAGGAGGVGSTTGGAGGAGGNAGLLVGAGGA 383

Query: 63  GTPGIM-GGRLGMVGSEGNEGILGIMGGRLGTIG-GKGNEGTLGIMGGRLGAIGSEGIFG 122
           G  G + GG  G+ G+ GN G  G++ G  G  G G G  G  G +GG+ G IG  G  G
Sbjct: 384 GGAGALGGGATGVGGAGGNGGTAGLLFGAGGAGGFGFGGAGGAGGLGGKAGLIGDGGDGG 443

Query: 123 IMGERSGMIGNEGNEGTPEITDGMEGN 148
             G  +G  G +G  G   I  G  GN
Sbjct: 444 AGGNGTGAKGGDGGAGGGAILVGNGGN 467

[Close]

BLAST of CSPI01G14490 vs. ExPASy Swiss-Prot
Match: Q30D77 (Collagen alpha-1(XXIV) chain OS=Mus musculus OX=10090 GN=Col24a1 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04
Identity = 50/142 (35.21%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 12  RGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMG-----GRLGTIGGEGNEGTPG 71
           RG   + G+ G I      G   G+ G E N G+ G+ G     G +G +G EG  GTPG
Sbjct: 600 RGEHGLPGLAGNIGSPGYPGR-QGLAGPEGNPGSKGVRGFIGSPGEVGQLGPEGERGTPG 659

Query: 72  IMG-----GRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMG-----GRLGAIGSE 131
           + G     GR G  G  G+ G  G + G  G +GG G  G  G+ G     G  G  G+ 
Sbjct: 660 VRGKKGPKGRQGFPGDFGDRGPAG-LDGSPGLVGGTGPPGFPGVTGSVGPAGPTGPPGAP 719

Query: 132 GIFGIMGER--SGMIGNEGNEG 137
           G  G+ G R  SG+ G++G +G
Sbjct: 720 GPMGLSGSRGPSGIKGDKGEQG 739

[Close]

BLAST of CSPI01G14490 vs. ExPASy TrEMBL
Match: A0A0A0LY65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153560 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.3e-54
Identity = 123/154 (79.87%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MFGILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG 60
           MFGILGTGILGRGGKSVDGIEGTI GIVVGGTILGMNGIEDNEGTLGIMGGRLGTIG EG
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGSEG 60

Query: 61  NEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGS---EG 120
           NEGTPG+MGGRLG +GSEGNEG  G+MGGRLGTIGGKGNEGT GIMGGRLG IGS   EG
Sbjct: 61  NEGTPGVMGGRLGTIGSEGNEGTPGVMGGRLGTIGGKGNEGTPGIMGGRLGTIGSEGNEG 120

Query: 121 IFGIMGERSGMIGNEGNEGTPEITDGMEGNNCGR 152
             G+MG R G IG +GNEGTP +  G  G   G+
Sbjct: 121 TPGVMGGRLGTIGGKGNEGTPGVMGGRLGTIGGK 154

[Close]

BLAST of CSPI01G14490 vs. ExPASy TrEMBL
Match: A0A672GY60 (Uncharacterized protein OS=Salarias fasciatus OX=181472 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 67/163 (41.10%), Postives = 89/163 (54.60%), Query Frame = 0


Query: 3   GILGT-GILGRGGKSVDGIEGTISGIVVGGTI-----LGMNGIEDNEGTLGIMG-----G 62
           G LGT G LG  G    G +GT+  + + GT+     LG+ G +   GTLGIMG     G
Sbjct: 34  GTLGTQGTLGTQGTL--GTQGTLGTLGIQGTLGTLGTLGIQGTQGMLGTLGIMGTLGIQG 93

Query: 63  RLGTIGGEGNEGTPGIMG--GRLGMVGSEGNEGILGIMG-----GRLGTIGGKGNEGTLG 122
            LGT+G +G +G  G +G  G L M+G+ G +G LGI G     G LGT+G  G +GT G
Sbjct: 94  TLGTLGTQGTQGMLGALGIQGTLAMLGTLGIQGTLGIQGTLGKLGTLGTLGMLGIQGTQG 153

Query: 123 IMG--------GRLGAIGSEGIFGIMGE--RSGMIGNEGNEGT 138
           IMG        G+LG +G+ G+ GI G     G +G  G +GT
Sbjct: 154 IMGTLGIQETVGKLGILGTLGMLGIQGTLGTQGTLGTLGIQGT 194

[Close]

BLAST of CSPI01G14490 vs. ExPASy TrEMBL
Match: A0A6I9ZE69 (collagen alpha-2(IV) chain-like OS=Geospiza fortis OX=48883 GN=LOC102036783 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 68/169 (40.24%), Postives = 92/169 (54.44%), Query Frame = 0


Query: 1   MFGILGTGILGRGGK-------SVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMG--- 60
           M GILG G LG  G         + GI+G +    + GT LG++GI   +G LGI G   
Sbjct: 251 MLGILGWGTLGIQGTFGILRTLGIHGIQGMLG---IQGT-LGIHGI---QGMLGIQGRGT 310

Query: 61  -GRLGTIGGEGNEGTPGIMGGRLGMVGSEGNEGILGIMG--GRLGTIGGKGNEGTLGIMG 120
            G LGT+G EG +G PGI+ G LGM+G EG +GILG +G  GRLG  G  G +G  G++G
Sbjct: 311 LGILGTLGIEGIQGIPGIL-GTLGMLGIEGIQGILGTLGIPGRLGMQGIPGMQGMPGMLG 370

Query: 121 --------GRLGAIGSEGIFGIMGERS--------GMIGNEGNEGTPEI 141
                   G LG +G +G+ G++G +         GM+G  G  G P +
Sbjct: 371 IPGMPAVPGMLGMLGMQGMQGMLGMQGIPGMQGMPGMLGMLGMLGMPAV 411

[Close]

BLAST of CSPI01G14490 vs. ExPASy TrEMBL
Match: A0A5C1WAB6 (Trigger factor OS=Labrys sp. KNU-23 OX=2789216 GN=tig PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 3    GILGTGILGRGGKS--VDGIEGTISGI--------VVGGTILGMNGIEDNEGTLGIMGGR 62
            G +G G+ G GG    V G+ G I GI        VVGG    + G+  + G  G++GG 
Sbjct: 1060 GAIG-GVGGDGGLGGVVGGLTGAIGGIGGDGGLGGVVGGLAGAIGGVGGDGGLGGVVGGL 1119

Query: 63   LGTIGGEGNE-GTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTL-GIMGGRL 122
             G IGG G E G  GI+GG  G VG +G  G+ G++GG  G IGG G +G L G++GG  
Sbjct: 1120 TGAIGGLGGEDGLGGIVGGLTGGVGGDG--GLGGVVGGLTGAIGGVGGDGGLGGVVGGLT 1179

Query: 123  GAIGSEGIFGIMGERSGMIGNEGNEGTPEITDGMEG 147
            GAIG +G  G+ G   G+ G +G  G   I  G+ G
Sbjct: 1180 GAIGGDG--GLGGAIGGLGGEDGLGG---IVGGLTG 1207

[Close]

BLAST of CSPI01G14490 vs. ExPASy TrEMBL
Match: F9MNA7 (Hemagglutinin (Fragment) OS=Megasphaera sp. UPII 135-E OX=1000569 GN=HMPREF1040_1341 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 11  GRGGK--SVDGIEGTISGIVVGGTILGMNGIEDN------EGTLGIMGGRLGTIGGEGNE 70
           G+ G+  ++DG +G I      GT + +NG +        +GT   M G+ GTIG  G +
Sbjct: 442 GKDGEKVTIDGKDGKIESKAKDGTTVTVNGKDGTVGATGADGTTVTMNGKDGTIGATGAD 501

Query: 71  GTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGSEGIFGIM 130
           GT   + G+ G VG++G +G    M G+ GTIGGKG +GT   M  + G IG++G  G  
Sbjct: 502 GTTVTVNGKDGTVGAKGTDGTTVTMNGKDGTIGGKGADGTTVTMNAKDGTIGAQGPKGAN 561

Query: 131 GERSGMIGNEGNEGTPEIT 142
           G+    +   G +G   IT
Sbjct: 562 GKDGASVTINGKDGITTIT 580

[Close]

BLAST of CSPI01G14490 vs. NCBI nr
Match: XP_031739036.1 (collagen alpha-1(IV) chain [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 3.7e-57
Identity = 135/156 (86.54%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MFGILGTGILGRGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG 60
           MFGILGTGILGRGGKSVDGIEGTI GIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLGIMGGRLGTIGGEG 60

Query: 61  NEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGS---EG 120
           NEGTPGIMGGRLGMVGSE NEGILGIMGGRLGTIGGKGNEGTLGIMGGRLG IGS   EG
Sbjct: 61  NEGTPGIMGGRLGMVGSECNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGTIGSEGNEG 120

Query: 121 IFGIMGERSGMIGNEGNEGTPEI------TDGMEGN 148
             GIMG R G IG+EGNEGTP I      T G EGN
Sbjct: 121 TPGIMGGRLGTIGSEGNEGTPGIMGGRLGTIGSEGN 156

[Close]

BLAST of CSPI01G14490 vs. NCBI nr
Match: XP_014166856.2 (collagen alpha-2(IV) chain-like, partial [Geospiza fortis])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 68/169 (40.24%), Postives = 92/169 (54.44%), Query Frame = 0


Query: 1   MFGILGTGILGRGGK-------SVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMG--- 60
           M GILG G LG  G         + GI+G +    + GT LG++GI   +G LGI G   
Sbjct: 251 MLGILGWGTLGIQGTFGILRTLGIHGIQGMLG---IQGT-LGIHGI---QGMLGIQGRGT 310

Query: 61  -GRLGTIGGEGNEGTPGIMGGRLGMVGSEGNEGILGIMG--GRLGTIGGKGNEGTLGIMG 120
            G LGT+G EG +G PGI+ G LGM+G EG +GILG +G  GRLG  G  G +G  G++G
Sbjct: 311 LGILGTLGIEGIQGIPGIL-GTLGMLGIEGIQGILGTLGIPGRLGMQGIPGMQGMPGMLG 370

Query: 121 --------GRLGAIGSEGIFGIMGERS--------GMIGNEGNEGTPEI 141
                   G LG +G +G+ G++G +         GM+G  G  G P +
Sbjct: 371 IPGMPAVPGMLGMLGMQGMQGMLGMQGIPGMQGMPGMLGMLGMLGMPAV 411

[Close]

BLAST of CSPI01G14490 vs. NCBI nr
Match: MBK8201852.1 (hypothetical protein [Bdellovibrionales bacterium])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 1   MFGILGT-GILGRGGKSVDGIEGTISGIV----VGGTILGMNGIEDNEGTLGIMGGRLGT 60
           M G++G+ G++G G   + G  G + G +    + G +  M G     G +G+MGG +G 
Sbjct: 415 MMGMMGSMGMMG-GAMGMMGNMGMMGGSMGMMGMMGNMGMMGGAMGMMGNMGMMGGSMGM 474

Query: 61  IGGEGNEGTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTLGIMGGRLGAIGS 120
           +G  G  G  G+MGG +GM+G+      +G+MGG +G +G  G  G +G+MGG +G +G 
Sbjct: 475 MGMMGMMGNMGMMGGAMGMMGN------MGMMGGLVGMMGMMGMMGNMGMMGGSMGMMGM 534

Query: 121 EGIFGIMGERSGMIGNEGNEGTPEITDGMEG 147
            G  G+MG   GM+G  GN G    + GM G
Sbjct: 535 MGNMGMMGGSMGMMGMMGNMGMMGGSMGMMG 558

[Close]

BLAST of CSPI01G14490 vs. NCBI nr
Match: WP_149249425.1 (trigger factor [Labrys sp. KNU-23] >QEN85155.1 trigger factor [Labrys sp. KNU-23])

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-06
Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 3    GILGTGILGRGGKS--VDGIEGTISGI--------VVGGTILGMNGIEDNEGTLGIMGGR 62
            G +G G+ G GG    V G+ G I GI        VVGG    + G+  + G  G++GG 
Sbjct: 1060 GAIG-GVGGDGGLGGVVGGLTGAIGGIGGDGGLGGVVGGLAGAIGGVGGDGGLGGVVGGL 1119

Query: 63   LGTIGGEGNE-GTPGIMGGRLGMVGSEGNEGILGIMGGRLGTIGGKGNEGTL-GIMGGRL 122
             G IGG G E G  GI+GG  G VG +G  G+ G++GG  G IGG G +G L G++GG  
Sbjct: 1120 TGAIGGLGGEDGLGGIVGGLTGGVGGDG--GLGGVVGGLTGAIGGVGGDGGLGGVVGGLT 1179

Query: 123  GAIGSEGIFGIMGERSGMIGNEGNEGTPEITDGMEG 147
            GAIG +G  G+ G   G+ G +G  G   I  G+ G
Sbjct: 1180 GAIGGDG--GLGGAIGGLGGEDGLGG---IVGGLTG 1207

[Close]

BLAST of CSPI01G14490 vs. NCBI nr
Match: NBU93789.1 (collagen-like protein [Actinobacteria bacterium])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 59/153 (38.56%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 3   GILGTGILG-RGGKSVDGIEGTISGIVVGGTILGMNGIEDNEGTLGIMG--GRLGTIGGE 62
           GI GTGI G  G +   G +G I    + GT  G+ G    +GT G+ G  G  GTIG  
Sbjct: 153 GITGTGIQGSTGAQGTIGTQGAIGAQGITGT--GIQGTTGAQGTNGLQGFIGSQGTIGAT 212

Query: 63  GNEGTPGIMG-----GRLGMVGSEGNEGILGIMG--GRLGTIGGKGNEGTLGIMGGRLGA 122
           GN+GT G  G     G  G+ G+ G  G+ G+ G  G +GT G  G +GT+G  G + G 
Sbjct: 213 GNQGTTGTQGTTGLQGFTGLQGTNGTNGVQGLTGSQGAVGTQGTTGAQGTIGTTGNQ-GT 272

Query: 123 IGSEGIFGIMG--------ERSGMIGNEGNEGT 138
            GS+G+ G+ G           G IGN+G  GT
Sbjct: 273 TGSQGLTGLQGFTGTQGTTGLQGTIGNQGTTGT 302

The following BLAST results are available for this feature:

BLAST of CSPI01G14490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5UPS7	7.7e-05	38.51	Collagen-like protein 4 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R2...	[more]
P9WIF5	6.5e-04	34.69	PE-PGRS family protein PE_PGRS33 OS=Mycobacterium tuberculosis (strain ATCC 2561...	[more]
Q30D77	8.5e-04	35.21	Collagen alpha-1(XXIV) chain OS=Mus musculus OX=10090 GN=Col24a1 PE=2 SV=2	[more]

BLAST of CSPI01G14490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY65	9.3e-54	79.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153560 PE=4 SV=1	[more]
A0A672GY60	1.7e-07	41.10	Uncharacterized protein OS=Salarias fasciatus OX=181472 PE=4 SV=1	[more]
A0A6I9ZE69	6.5e-07	40.24	collagen alpha-2(IV) chain-like OS=Geospiza fortis OX=48883 GN=LOC102036783 PE=4...	[more]
A0A5C1WAB6	3.2e-06	41.03	Trigger factor OS=Labrys sp. KNU-23 OX=2789216 GN=tig PE=3 SV=1	[more]
F9MNA7	1.6e-05	35.25	Hemagglutinin (Fragment) OS=Megasphaera sp. UPII 135-E OX=1000569 GN=HMPREF1040_...	[more]

BLAST of CSPI01G14490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739036.1	3.7e-57	86.54	collagen alpha-1(IV) chain [Cucumis sativus]	[more]
XP_014166856.2	1.3e-06	40.24	collagen alpha-2(IV) chain-like, partial [Geospiza fortis]	[more]
MBK8201852.1	2.3e-06	36.42	hypothetical protein [Bdellovibrionales bacterium]	[more]
WP_149249425.1	6.7e-06	41.03	trigger factor [Labrys sp. KNU-23] >QEN85155.1 trigger factor [Labrys sp. KNU-23...	[more]
NBU93789.1	1.1e-05	38.56	collagen-like protein [Actinobacteria bacterium]	[more]

BLAST of CSPI01G14490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14490.1	CSPI01G14490.1	mRNA