Cucsat.G11786 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11786
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA-directed RNA polymerase III subunit RPC5 isoform X1
Location	ctg1820: 5169293 .. 5177734 (+)
RNA-Seq Expression	Cucsat.G11786
Synteny	Cucsat.G11786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCTGAAATTATTTTTGAAAGAAAAAGAGAAAGTAAAGGGAAAATTACTTAGAAAAATAACGAAAATAAACCTAAAAAAAGAGCATACAGAAAATTTATGGGTGCGGCGGTCTAAGTTATCTCTCCGCCGGAGCAGTTGGTGGTTGCGGAAAGAAAAAACTTCGATTGCATATTCTCTAGTGTCCGATAAGCTTTTCGCTGCTGATTCACCAAGAGGAAGGAGCACGTCAAAAACCTTTCAGGATGGACCTGGACGGCCTAGACGAAGGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCTAACGAAGTTGGAACCTCAACCTCCCATTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCGAGTTGAGGAGAAGAAGGAAGACGGTGAAGAAGTAGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATGCAATGGTGGATGATGATCCAATTGAAGAGGATGCTTCTGAAGATATGGTTGTTCGTGAAATCGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAAGTTAGTCTTCTTTGCCTTTGTCTTTCATACCTTGTACCATTATTTAGTTCTTTTTGAAATTTTAACTTGACTGTCATCTATTTCCAGTTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTCGAGGGGCGATGTGACGAGGTGAGCATTTTCTTTAATTCCTTATTATTCTGGAAGAATTTGAACTGTACTCTTTTAGTTTCAACAGGTAAGAGTTAAACCTAGCACTGGAGAAGTGGAAGTCGACCTGAATGTTGATATTGAATCCAATAACTATGACAACAAAGCTGATGGCACATTCCAAATGAAGAAGCAGGTATCTTCTCTTACTGTTCTGTTGATTTAAATTGCTGCGAATTCATGCATATTTGGCTATTTATTAGGATTACTAGTCTGGTTCATCTGTGTGATTGAACTTGCAGATCATGTCAGGTTTAACTTGAAAAAACATGCTACATTCGTTAGGATTTTCCCAAAAGATAAAACAGTGATAGTTCATTGAAACCGAATTCAGCAACAGTTTCTAGTTGAATCTTCTTTCTTTTCTTTCTTTTTTTCCCGTCGTATTATCCTTGAGTTTCTTTTCACTTTATCAACTTAACTATGTTTCACCTATTAATTAGTCATGGGCTATTTCTTTCATGTACTATATTCAACAGAGGATTGATTTATTGGCAGTGTATTTTTGTGGATACCAATAAAATTTTGTTTTTGGTTCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGTCTGCTTATGGGCAATAAGGTTGCTTCTCTCTATCTCATATCTTTTGAACTGCACACCTTTTCTTTTCTTCTTCTTCTTTTTATGATTGACATTGAATCAACCGTAGTTAATGGACCCTTAGTTTCTTCATTGTTCTAGCACTCAGTCATTTTTAATTTTGAATCAGAAAACATAAGCGTAGTGGTAAGCAAGAATAATAAAGTTCTTGGAGGAAATAGGTTCAAGCCACGGTGGCCTTACCTTAGATTTAATATACTACGAGCTTTATTAACAATGAAATGTAGTAGGGTTAGACAGGGTCCTATGAGAATAGACAAGGTACACAAATGACACGGACTCTCACATAAATAGAAAAGAATAATATTGAAATATTAAGTAACCATGAATAAAAGGTTTCCATAAAAGTTTTGATTATTGGAAGAATAGTTACAAACACTTCTTACGTATTACAATATGAGCTCACATTTCGCTTAACAATATCATATTTATCTACCAAAGAAGGTTGTTTGCCTTAAAATAAATGTTGATTATTATTCAACTTATTGCCTCCTCAAAATTGACTTGACCGTCTATATTCTTAAATTTTGTCTTCTTAAAACTTTGATGGTGAAGGAAATGGAAAATATGTAAAATCTTGGCATATGTTGCCTTTTTCTCAAAAGGAAACAACAGATATTTTGGTCTTTTGTTGTCATTGTTTGGATATTTTTCTTTTGTTTTACTAAGGAGAAGGGATTCTTGTTCATGAGGCCTTGATCCTGTGGTGGGGTTTTCTTGCAAATACTTTTTTTGTTGTTTAGTGGAACACTTTTTTGTTGCTATGAAAGATTAAAATTTCTTGAAGGTTATATTTTTATTCCAGAAGTTCTTCACAGTAGAGTTTATACTTTAGATCACATTATGAGGATCTTATACTGTTGTATCTGTAATTGTTTGAATGGAAAACCTAGATTTTGTACTTGGTCAAATTGGTCCTTTTCTTCTAACTAATTAGCATGAACGCAAGAGGATCATAGGTTTCTGCTTATTCCCCTAATCTTATGATGGTCATCAAATCATTTGTCAAATTTTAGAACAAGGACCTGTTTGTTTAGTTTTCCTTTAAAAGTAAATAACTATTGCTAATGTATCTATGTGTTATATTGCAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATAATGTTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGGTTATTTTCTATTTTTTCTATTCCATTCTAAAGTACTGCTGAAATATAGTGAATTTTATCTTGGGAAATCTGCCAAGTCGCTGATCGTGTTTATTTGGTAACTGTAAAGTATAATCATAATAACAATTATTGTTATTATTTTATAGGGAACACAATCATTTAATAGCTAGAAACCTCTGGGGCTATGCTGGTAGAGCTTTCCTTGGCTTTGTTGGATGGAAAGGAACAAAAGTTTTATTTGAAGAGAAGTTACTGATTTTATTTCTTTTTGTGGCAACTTTCAGCTATTAGCCTCTTGGTTGTGTCACACTTACAATCAATCCTTTTTAATTACTTTTGTTTAGGCTTTGTTTGATAACAATTTTATTTTCAGTTTTTGGAAACTAAGTATATTTCTAACACGACTTTCATCTTTCTGGACTAAAAGAGTTGAATTCTTAGCCAAATTTCGAAAATTATAACAATTTTTTAGAAACTATTGTTGGCTGTCAGAAGGGTATTTACCTTTACCCGGAAGACTTTTTTTTTCTTTTTTTGCAACTTACCTTATTCCTTTGAATGGTCTATTCTTAGTTTATTTATTTATTTATTTTATCATTAACTTACTGTCTACTGACCTTATCATTGTATTGCATTGGTTCACATCTGGGATTACATATTTTGTTCTGGTATTTATGGATTTTTGTATTGTTTCTATGGAACAGAAGAAGCAAACAGGACCTTCAACGGAAGTTAAAACTAGAGATGAGGAGGTAACACCATTGAAAATGAGTGCTCAATAGTGTAGGTTTAAGATTGTTTCTGAGAAAGTATTTTTTAGTGGGAGTTTCTTCCCCTGCACTTGTAGAAGAATTACTTATTAAGTGATGCTTCTAAAAGCAGCTTTAGTGCTTTCTAAGTGTTAGGTTTTTCAACATTTTTTTAAACTATGGAATGACATACCTTGAAAATTTTGAAATATGTTTTCAATGAACAAAAAAATGAGACATGATCCTACTAACTAATTAAGAGATCATGGGTTCATTCCATGGTGGCCACCTACCTCGAAATTAATTTCCTAGACACTCAAAGGTTGTAAGGTTAGGTGGGTTGTTCCGTATGATTAGTGAGATGCGTGTAAGCTGGTCCAAACACTTACGAATATTAAAAGAAAATTGACAAATGAAAACTATTACTCAAAGTACAAGGAAACATAACTCAAAGTACTTATCCTTGAGATAATGAAAAGAGACTATTTCTCAAAGTACAAGGGAACAAATGAAAACGTGTAGATTTAAACAATCAAAGACACGACTATCAACCTTAGGTATGATTGCCTTACTGTTAAATCCATCATTTTATAGTCGTCTAAAATTGTTTTGTTCACTTTTTCTCTCTAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAGAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGTATGTGTTTTTTGCTTGTTTATGTATTAAATCTTTAATACAGTAAATTTCATCTATCTGATAATTTTTCTTTTGAGTATTTGATTTGGTTCCTACTTATTTAAGGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTAAATACAATTACATATTCAGCTGTTTAATTTATGTTACCGAACATTTAAGTTGTCAGGCAACTGGTTGCAAGAAGTTGTCGGGGAGACTTCTAGTATTGATTAATGTTTTAATCCTACTTATGGGCATTTCAGGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGTTTGTTTTAAATGAATACTTGTAAAAAAATTATTTCTGATGCATTTGCACATCTACTATAGCATCTAACTTCTATGCATTATTTGTTGGACGTATATTCCATCTTTTATGGTTTCATATTCATCAAACATTTTTTATTATCATTTAACTTACTGTCAAATTTAAGTTATTAGTATCTCTTTTTTAGTATTCGGGTCTTGAGAAAACTGTGACCTTATTACAAGAAAACTTTTAGTATATTGTGTGATCCTACTACATTTAGTTGTCAAGAAAACTTGTAGGATATTAAATCCTAGGTTGACTATAATTTGAACTTATTTTTTCTATGTTCTACTGTTTTCATTGTTCACAAAGACTACCAGACTGGTGGGTATTATCAGTATTGTTTTAGAAATAGATAATAACTTCTATTTTATTTATTTATTTATTTCTATAAGAAACAACTTTATTGATTGAATAAAATATCCCAAGATATCCGAAAATGGAAGGAAAAAAAAAGAAAGAAAAAGAGAAAAAAATATTAGAGGAACGAGAAAAAAGATTGGGAGGATGTCTTCGGAATGGCTTAAGTTTAATTTTTCTTCATGTTGCAAGCTTTTTTGTAATTATATTTCTTTTATTTTTTTTAGTTCTCATTGATGTTAAGTTTATGTGATATTTCATATGTTGTTTCTGCTGGGATATTAGCTACTGTAAATGTGAAACATGGAGTTGAATTGAGCACATTCCCATTTTTTTGCTTTTGGTAACTTTGGGAATTTGAAATTCCAGTTTCTTCCCTGGAATTTGTTTCCTTTTTCAAATTTTTAATCTATCAACAAAACGTTTCTTTCATTTAAAAGAAGAAAAAAACAGTCAAAATTATCTATAGCATTAGTTAGCTATACCAACACGGTGGATGGTTATGAACTATATGATGTTCATACCAGTGTTGGTGTCCTTATCTGTGTTTTTTAAGAAGGAAATGGTGCTGGCGTTTTATTAAAAAGTGTATTTACTGCTTCCCCTGACACGTCAGATTCAAGAATGATTCACATTAAAGGATCCATAGTTAAAAGAAAAATGGCTGGGCTTAGACAGGAGTTTGAAAATGAAGTACAACTACGGCTATCTGCTTTAGAAGCTGATCATATTTTCCATCAATTGGTCATATTTAAATATTGGTTCTTTTTGTTTCATATAAGTTTAAATAAAAAGTTGCGAACGCTTTTCACATTTGCTATTGGGAGATATTTTACCTCCTTCCCCGGTTAAGCAAAATATAGTTTGGAATTGAAGGAGGAAGTGGGAGATGCTAATGGCTTCACTAGGAAGTGCATTGCCTTTATATCATGCTGATTCATTGTTGATGACTTATTCCATGTTTCCATATTTGTTTTCTGAACAATCTTTTTCTTTCTTTTCAATAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGGTAGGGGCTCATTTTTTTCATTCTTGTGTGGTTATTCTACGAGATGTTTTTCTTGGTTGGGAAGGAATGCTACTGTGTTGAATAGTATGGAGAGGAGCTTTGATGAGATTTAGGATGTCATTGCCATTTAACCTTAACCTCTTTTTGCCGTGGGAACGCACTTTTAAATAAATGATAGCCTTCTTTTAGATTTGGAAACAATTATATCTCTCTGTACATTTTTACATGCACCGTATTGGTCCTTTGGGCTGCTTTGTTGAGGGGTTTTTTTCTTCTTATTTTTTTCTTTTCTATTTTAAGTTTGTCTTCGTATTTTGTAATAGCCTTAGAGTTGATTTATCATAGGGCATGGAAGTAATCTATTCCTGGTGGTATCATGGAGAAGATGAATCTTCTATTAACAAGGCTGATGTGGTTGCCTTATTATTGTAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCCCAGTCTACTCTTCCGAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGTTGTTGACTTTTATTCATGTTTAAGTGTCTTTATGTGAAAATTGTTTGCATTATTTTTCCATGCTTGTATCAATGTTGAAAAATATTTGAAATTTCACTTGTGCCTGAGAATTTGGCGTCTTTGTTCTTTACCTTATGTGGCATGCTGCTCTATGCAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCATGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTAGCCAATATTTTATTTGAGCTTACCCGCTTGAAAAAGGGAAATTTGTAATCGATTATTTTCCTTTGAAAAAGGAAAATTTTCAAGCAGGAAGGGATTGGGTTGTGCGATCAAATTACAAATTTCCGTAAATGTTATCAGCCTCCTTAACTGGTGTTACGATATCTGAGTGTTGTCTTGCCCTGTTGCATTCTCGCAGGTTATGAATGAAATTTGCATATCCCACGGTTCTTCTTGGACCTTGAAGAGTGGTGATGGAAATTCAAGATGATTAGGTTCTTGGAACATCATTCCGAGCACAATTAAAGAGGAGGTTCAAAGAAAAGCAAGCAACCAGATCTTCTCACTCTGTTGTACAACTTTCTACTCTTGAAAGTGTATCAAATTACACAAAGCATCTCTTCATCTTAAGAAGGGGTGAGAGAGAGAGGAAAAAAAAACCTTTTTTTTCTCATTTTAGCTCTGATTGATAAACAAAGCATTTTACAGATAAATGGAATGTGATTTCCAGTGGCCTCCCACAGCTAAATTTTGACTTCATGTATTACTCTACTGTCTTTTATCATCAGGTACCATATTCCAGCGCAGGGAAGCTTAGTGGAAAATGCTTTGGCAGACGCAACACTCTTTAATATCATTTTGCAAAATACAAATTTTGAAATGTACAGACAGGTAAATATTAGCCCTCTTATATTAGGCAATTTTATCCTTGCTATGTCAATAAGATGCAGCAAGAAACAGTGTAATGCTACAGTGCACAATTTTGGCAATGAACCAAGATCTTCGGACCCTTTTTAAAAAATTTCCTTCTTTTTTCTTTTTTGTTGGTGTCTTTTATGAACAAAATTGAGGATGCTCTTATTTCTTTTAGTGGACATCGTTTTTTAGTTATTAAATTTCAGTTTATTACTAGT

Coding sequence (CDS)

ATGTATCTATGTGTTATATTGCAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATAATGTTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAAGTTAAAACTAGAGATGAGGAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAGAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGGTAG

Protein sequence

MYLCVILQLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCR

Homology

[Close]

BLAST of Cucsat.G11786 vs. NCBI nr
Match: XP_004149158.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53263.1 hypothetical protein Csa_015177 [Cucumis sativus])

HSP 1 Score: 861 bits (2225), Expect = 6.63e-311
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 273 KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 332

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ
Sbjct: 333 PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 392

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 393 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 452

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA
Sbjct: 453 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 512

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 513 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 572

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 573 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 632

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW
Sbjct: 633 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 692

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 693 TLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786 vs. NCBI nr
Match: TYK16700.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 804 bits (2076), Expect = 1.34e-288
Identity = 401/430 (93.26%), Postives = 410/430 (95.35%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 250 KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 309

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF+E LQ
Sbjct: 310 PGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQ 369

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 370 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 429

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  H  A 
Sbjct: 430 NLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTAT 489

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 490 TGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 549

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 550 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEH 609

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGSSW
Sbjct: 610 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSW 669

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 670 TLKSGDGNSR 679

[Close]

BLAST of Cucsat.G11786 vs. NCBI nr
Match: KAA0044763.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 804 bits (2076), Expect = 2.29e-288
Identity = 401/430 (93.26%), Postives = 410/430 (95.35%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 265 KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 324

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF+E LQ
Sbjct: 325 PGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQ 384

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 385 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 444

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  H  A 
Sbjct: 445 NLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTAT 504

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 505 TGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 564

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 565 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEH 624

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGSSW
Sbjct: 625 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSW 684

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 685 TLKSGDGNSR 694

[Close]

BLAST of Cucsat.G11786 vs. NCBI nr
Match: XP_008453719.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo])

HSP 1 Score: 804 bits (2076), Expect = 3.04e-288
Identity = 401/430 (93.26%), Postives = 410/430 (95.35%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 273 KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 332

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF+E LQ
Sbjct: 333 PGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQ 392

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 393 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 452

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  H  A 
Sbjct: 453 NLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTAT 512

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 513 TGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 572

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 573 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEH 632

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGSSW
Sbjct: 633 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSW 692

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 693 TLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786 vs. NCBI nr
Match: XP_038876785.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida])

HSP 1 Score: 748 bits (1930), Expect = 5.05e-266
Identity = 376/432 (87.04%), Postives = 396/432 (91.67%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KT DEECWIPLKYYG ESDLSTRHL+SMV+QT +PMQFSMSP DYMDSLC
Sbjct: 273 KKQTGPSTELKTGDEECWIPLKYYGQESDLSTRHLRSMVAQTAAPMQFSMSPLDYMDSLC 332

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSK+YLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEFIE LQ
Sbjct: 333 PGTSTSSNKPKGPSKRYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFIEALQ 392

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQ VQGLWVPKS  L+PQD SGRCARDFVL LFSKNPVVSSSQINVPKSLR++VKHFL
Sbjct: 393 QYAQSVQGLWVPKSSVLLPQDASGRCARDFVLNLFSKNPVVSSSQINVPKSLREKVKHFL 452

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFT--FLRSIKSVHHAN 242
           NLFGVERPAFKDWKFKEKTD LFLSN+V + +KQE++W +VE+G +  F  S KSV HAN
Sbjct: 453 NLFGVERPAFKDWKFKEKTDHLFLSNYVDLVQKQEKIWRSVEEGISKIFHGSGKSVSHAN 512

Query: 243 AATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSF 302
           AATGKP +V K EKQVS+D+ T KSSNA LNRK  MSDETREALPKALQKLF NHKVCSF
Sbjct: 513 AATGKPDMVSKPEKQVSNDKATIKSSNAALNRKSTMSDETREALPKALQKLFHNHKVCSF 572

Query: 303 QLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSP 362
           QLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSP
Sbjct: 573 QLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSP 632

Query: 363 EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGS 422
           EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGR I SNEYSKVMNEIC+SHGS
Sbjct: 633 EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRGITSNEYSKVMNEICVSHGS 692

Query: 423 SWTLKSGDGNSR 432
           SW LKSGDGNSR
Sbjct: 693 SWALKSGDGNSR 704

[Close]

BLAST of Cucsat.G11786 vs. ExPASy TrEMBL
Match: A0A0A0KUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1)

HSP 1 Score: 861 bits (2225), Expect = 3.21e-311
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 273 KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 332

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ
Sbjct: 333 PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 392

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 393 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 452

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA
Sbjct: 453 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 512

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 513 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 572

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 573 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 632

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW
Sbjct: 633 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 692

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 693 TLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786 vs. ExPASy TrEMBL
Match: A0A5D3CZA9 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005330 PE=4 SV=1)

HSP 1 Score: 804 bits (2076), Expect = 6.47e-289
Identity = 401/430 (93.26%), Postives = 410/430 (95.35%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 250 KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 309

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF+E LQ
Sbjct: 310 PGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQ 369

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 370 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 429

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  H  A 
Sbjct: 430 NLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTAT 489

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 490 TGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 549

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 550 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEH 609

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGSSW
Sbjct: 610 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSW 669

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 670 TLKSGDGNSR 679

[Close]

BLAST of Cucsat.G11786 vs. ExPASy TrEMBL
Match: A0A5A7TMP0 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00520 PE=4 SV=1)

HSP 1 Score: 804 bits (2076), Expect = 1.11e-288
Identity = 401/430 (93.26%), Postives = 410/430 (95.35%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 265 KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 324

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF+E LQ
Sbjct: 325 PGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQ 384

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 385 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 444

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  H  A 
Sbjct: 445 NLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTAT 504

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 505 TGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 564

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 565 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEH 624

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGSSW
Sbjct: 625 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSW 684

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 685 TLKSGDGNSR 694

[Close]

BLAST of Cucsat.G11786 vs. ExPASy TrEMBL
Match: A0A1S3BX09 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 804 bits (2076), Expect = 1.47e-288
Identity = 401/430 (93.26%), Postives = 410/430 (95.35%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE+KTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC
Sbjct: 273 KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 332

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF+E LQ
Sbjct: 333 PGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQ 392

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL
Sbjct: 393 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 452

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAA 242
           NLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  H  A 
Sbjct: 453 NLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTAT 512

Query: 243 TGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 302
           TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL
Sbjct: 513 TGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQL 572

Query: 303 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEH 362
           ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEH
Sbjct: 573 ICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEH 632

Query: 363 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSW 422
           PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGSSW
Sbjct: 633 PEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSW 692

Query: 423 TLKSGDGNSR 432
           TLKSGDGNSR
Sbjct: 693 TLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786 vs. ExPASy TrEMBL
Match: A0A6J1JCH8 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483153 PE=4 SV=1)

HSP 1 Score: 740 bits (1911), Expect = 2.02e-263
Identity = 370/432 (85.65%), Postives = 396/432 (91.67%), Query Frame = 0


Query: 3   KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLC 62
           KKQTGPSTE KT DEECWIPLKYYGLESDLSTRHL+SMV+Q  SPMQFSMSPHDY+DSLC
Sbjct: 275 KKQTGPSTEPKTGDEECWIPLKYYGLESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLC 334

Query: 63  PGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQ 122
           PG S+S NKPKGPSK++LLSLSLEERIKKLLTEGPP+QRFSALKHYAPDYE +EFIE LQ
Sbjct: 335 PGASSSRNKPKGPSKRFLLSLSLEERIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQ 394

Query: 123 QYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFL 182
           QYAQ VQGLWV KS FL+PQDGSGRCARDFVL LFSKNPVVSSSQINVPKSLRD+VKHFL
Sbjct: 395 QYAQSVQGLWVAKSSFLLPQDGSGRCARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFL 454

Query: 183 NLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFT--FLRSIKSVHHAN 242
           N FGVERPAFKDW+FKEKTDRLFL+N+V I +KQE++W +VE+G T  F  S+K++ HAN
Sbjct: 455 NWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHAN 514

Query: 243 AATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSF 302
           AA  KP +VPK EKQV  D+ +TKSSNA LNRK  MSDETREALPKALQKLFQ HKVCSF
Sbjct: 515 AAPVKPEMVPKPEKQVIHDKASTKSSNAALNRKSTMSDETREALPKALQKLFQTHKVCSF 574

Query: 303 QLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSP 362
           QLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELK+II QVATEIHGLYVLTSSP
Sbjct: 575 QLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSP 634

Query: 363 EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGS 422
           EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+SHGS
Sbjct: 635 EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGS 694

Query: 423 SWTLKSGDGNSR 432
           SW LKSGDGNSR
Sbjct: 695 SWALKSGDGNSR 706

The following BLAST results are available for this feature:

BLAST of Cucsat.G11786 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G11786 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149158.1	6.63e-311	100.00	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53...	[more]
TYK16700.1	1.34e-288	93.26	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]
KAA0044763.1	2.29e-288	93.26	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]
XP_008453719.1	3.04e-288	93.26	PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo...	[more]
XP_038876785.1	5.05e-266	87.04	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]	[more]

BLAST of Cucsat.G11786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN5	3.21e-311	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1	[more]
A0A5D3CZA9	6.47e-289	93.26	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A5A7TMP0	1.11e-288	93.26	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3BX09	1.47e-288	93.26	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A6J1JCH8	2.02e-263	85.65	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 1..304 e-value: 1.6E-66 score: 225.3
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PANTHER	PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	coord: 1..298
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 332..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..355
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11786.T7	Cucsat.G11786.T7	mRNA
Cucsat.G11786.T31	Cucsat.G11786.T31	mRNA
Cucsat.G11786.T30	Cucsat.G11786.T30	mRNA
Cucsat.G11786.T19	Cucsat.G11786.T19	mRNA
Cucsat.G11786.T18	Cucsat.G11786.T18	mRNA
Cucsat.G11786.T17	Cucsat.G11786.T17	mRNA
Cucsat.G11786.T16	Cucsat.G11786.T16	mRNA
Cucsat.G11786.T15	Cucsat.G11786.T15	mRNA
Cucsat.G11786.T14	Cucsat.G11786.T14	mRNA
Cucsat.G11786.T13	Cucsat.G11786.T13	mRNA
Cucsat.G11786.T12	Cucsat.G11786.T12	mRNA
Cucsat.G11786.T11	Cucsat.G11786.T11	mRNA
Cucsat.G11786.T10	Cucsat.G11786.T10	mRNA
Cucsat.G11786.T33	Cucsat.G11786.T33	mRNA
Cucsat.G11786.T6	Cucsat.G11786.T6	mRNA
Cucsat.G11786.T5	Cucsat.G11786.T5	mRNA
Cucsat.G11786.T4	Cucsat.G11786.T4	mRNA
Cucsat.G11786.T3	Cucsat.G11786.T3	mRNA
Cucsat.G11786.T2	Cucsat.G11786.T2	mRNA
Cucsat.G11786.T1	Cucsat.G11786.T1	mRNA
Cucsat.G11786.T9	Cucsat.G11786.T9	mRNA
Cucsat.G11786.T8	Cucsat.G11786.T8	mRNA
Cucsat.G11786.T26	Cucsat.G11786.T26	mRNA
Cucsat.G11786.T27	Cucsat.G11786.T27	mRNA
Cucsat.G11786.T24	Cucsat.G11786.T24	mRNA
Cucsat.G11786.T25	Cucsat.G11786.T25	mRNA
Cucsat.G11786.T22	Cucsat.G11786.T22	mRNA
Cucsat.G11786.T23	Cucsat.G11786.T23	mRNA
Cucsat.G11786.T20	Cucsat.G11786.T20	mRNA
Cucsat.G11786.T32	Cucsat.G11786.T32	mRNA
Cucsat.G11786.T21	Cucsat.G11786.T21	mRNA
Cucsat.G11786.T28	Cucsat.G11786.T28	mRNA
Cucsat.G11786.T29	Cucsat.G11786.T29	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity