Cucsat.G9057 (gene) Cucumber (B10) v3

Overview
NameCucsat.G9057
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionGlycine-rich protein family
Locationctg1635: 1822075 .. 1823158 (+)
RNA-Seq ExpressionCucsat.G9057
SyntenyCucsat.G9057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCACCAAAAAATAGCAAAGTAACTTAGCAAAAACACTTGGCATTTCCAACTTAGCTTTGTTAACCCAAAAATGACTTACCCTAAAACCCTTATCGGTTTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCACAGGTCTCTGCTCGTCTACTCGGTTAGTTTGCTTATACCAAACTCGCTCATAAATTTGTTGATAGTGTATTAAAAAGATTAAATATGTTTTTGTGTATTCATTTTTTTGTGAATGGTTGTAACTTTTGCAGGATACTAATGTACAAATTTATGAAAAGACAAAAAAAGTGTTTAATTTATCACCGTTATAAAATAGTTGAGTATGTCATTGCATTTAATTTCATGTGAATATTCGACTCACATGAATTGAAAAATGTATTTATAGATAGCATAATGTTATTTTGTCTATCGTAATCTATTGCTCGGTGATATAAGTCTTTTGTGATCTATCGTTGATAGATAATGACATTTTGGTATATTTAAAAATGTTTTCATCAGTTTTACTACTTTAAAAAATTATCGGCCAACATTATATTGATTTTTTTAAAAAATAATAATTATGGTAGAGGAAGACAAAGTTAAGTCCGATGGCTTAGATTATCACGGAGGACGCTACGGCGGAGGACACTACGGCGGAGGTCACTACGGCGGAGGAGGTCACTATGGTGGGGGTCACTATGGCGGAGGAGGTCACTATGGCGGAGGTCACTACGGTGGAGGTCACTATGGTGGAGGAGGTCACTACGGCGGGGGACACTATGGTGGAGGACATGGCCTTGATGCTAACACCAAAGAGTCAAATGACCAAGGTCTAGATAAACATGGCGGAGGACACGGTGGACACCATGGTGGAGGACACGGTGGACACCACGGTGGAGGACATCATGGCCTTGATGCTGACGTGAAAAACTTGGACAGTCATGGCGGTGGCCACCACCACGACCACGGCCACCACCACTGCCACCACCCCCACTGCCCCGAGAGTGTTAAGAATTAGAACACTAAAACCTACTCCCCATCTGCAACCATGTTTGGTTCAAAATAAAAGCATCGTTGAAATAAAGTTTGT

Coding sequence (CDS)

ATGACTTACCCTAAAACCCTTATCGGTTTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCACAGGTCTCTGCTCGTCTACTCGAGGAAGACAAAGTTAAGTCCGATGGCTTAGATTATCACGGAGGACGCTACGGCGGAGGACACTACGGCGGAGGTCACTACGGCGGAGGAGGTCACTATGGTGGGGGTCACTACGGTGGAGGTCACTATGGTGGAGGAGGTCACTACGGCGGGGGACACTATGGTGGAGGACATGGCCTTGATGCTAACACCAAAGAGTCAAATGACCAAGGTCTAGATAAACATGGCGGAGGACACGGTGGACACCATGGTGGAGGACACGGTGGACACCACGGTGGAGGACATCATGGCCTTGATGCTGACGTGAAAAACTTGGACAGTCATGGCGGTGGCCACCACCACGACCACGGCCACCACCACTGCCACCACCCCCACTGCCCCGAGAGTGTTAAGAATTAG

Protein sequence

MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGGHYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGGHGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN
Homology
BLAST of Cucsat.G9057 vs. NCBI nr
Match: XP_011654035.2 (cold and drought-regulated protein CORA [Cucumis sativus] >KAE8649821.1 hypothetical protein Csa_012804 [Cucumis sativus])

HSP 1 Score: 286 bits (731), Expect = 1.81e-96
Identity = 159/172 (92.44%), Postives = 159/172 (92.44%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGG------------ 60
           MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDY GGRYGGG            
Sbjct: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYPGGRYGGGGHYGGGHYGGGG 60

Query: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG 120
           HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG
Sbjct: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG 120

Query: 121 GHHGGGHGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN 160
           GHHGGGHGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN
Sbjct: 121 GHHGGGHGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN 172

BLAST of Cucsat.G9057 vs. NCBI nr
Match: XP_008463760.1 (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo] >KAA0066755.1 cold and drought-regulated protein CORA-like [Cucumis melo var. makuwa] >TYK27902.1 cold and drought-regulated protein CORA-like [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 9.17e-57
Identity = 124/166 (74.70%), Postives = 127/166 (76.51%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGG-HYGGG-HYGGG 60
           MTYPKTLIG GLLLALLFISSQVSARLLEEDKVK+DGLDYHGG YGGG HYGGG HYGGG
Sbjct: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGGGGHYGGGGHYGGG 60

Query: 61  GHYGGG-HYGGG-HYGGG--GHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGG 120
           GHYGGG HYGGG HYGGG  GHYGGGHYGGGHGLDA+TK+ NDQGLD H    GGHHGGG
Sbjct: 61  GHYGGGGHYGGGGHYGGGHGGHYGGGHYGGGHGLDADTKKLNDQGLDSH----GGHHGGG 120

Query: 121 HGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN 160
           HG                   HGGGHHH      CHHPHCPESVKN
Sbjct: 121 HG-------------------HGGGHHH------CHHPHCPESVKN 137

BLAST of Cucsat.G9057 vs. NCBI nr
Match: XP_038900076.1 (histidine-rich glycoprotein-like [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.50e-16
Identity = 79/170 (46.47%), Postives = 93/170 (54.71%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDK--VKSDGLDYHGGRYGGGHYGGGHYGGG 60
           M Y KTL+  GLLLALLF+SS VSARLLEEDK  V+SD   +H       H+  GH+   
Sbjct: 1   MAYSKTLLVLGLLLALLFVSSHVSARLLEEDKGGVESDHHGHH-------HHDHGHH--- 60

Query: 61  GHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGGHGGH 120
                            H+  GH+   HG   +  ++N  GLD    GH GHHGGGHG H
Sbjct: 61  -----------------HHDHGHHDHDHGHHGHDHDANVDGLD----GHHGHHGGGHG-H 120

Query: 121 HGGGHHGLDADVKNLDSHGGGHHHDH-------GHHHCHHPHCP-ESVKN 160
           HGG HHG DA+V +LD H   HHHDH       GH H HH H   +SVKN
Sbjct: 121 HGG-HHGHDANVNDLDGH---HHHDHDHGHHDHGHDHGHHGHDQTQSVKN 134

BLAST of Cucsat.G9057 vs. NCBI nr
Match: KAG6591765.1 (hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 2.65e-14
Identity = 73/157 (46.50%), Postives = 79/157 (50.32%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDK--VKSDGLDYHG-GRYGGGHYGGGHYGG 60
           M Y KT +  GLLLALLFISS VSAR LEE K  V+SDG  +H  G +  GH+  GH   
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGH--- 60

Query: 61  GGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGGHGG 120
                                       HG DAN       GLD    GH GHHGGGHGG
Sbjct: 61  ----------------------------HGHDANVD-----GLD----GHHGHHGGGHGG 112

Query: 121 HHGGGHHGLDADVKNLDSHGGGH-HHDHGHHHCHHPH 153
           HHG      DADV +LD H G H HHDH  HH HH H
Sbjct: 121 HHG-----HDADVDDLDGHHGHHDHHDHHDHHDHHDH 112

BLAST of Cucsat.G9057 vs. NCBI nr
Match: KAG7024647.1 (hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 3.74e-14
Identity = 72/157 (45.86%), Postives = 79/157 (50.32%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDK--VKSDGLDYHG-GRYGGGHYGGGHYGG 60
           M Y KT +  GLLLALLF+SS VSAR LEE K  V+SDG  +H  G +  GH+  GH   
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGH--- 60

Query: 61  GGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGGHGG 120
                                       HG DAN       GLD    GH GHHGGGHGG
Sbjct: 61  ----------------------------HGHDANVD-----GLD----GHHGHHGGGHGG 112

Query: 121 HHGGGHHGLDADVKNLDSHGGGH-HHDHGHHHCHHPH 153
           HHG      DADV +LD H G H HHDH  HH HH H
Sbjct: 121 HHG-----HDADVDDLDGHHGHHDHHDHHDHHDHHDH 112

BLAST of Cucsat.G9057 vs. ExPASy TrEMBL
Match: A0A0A0L4K0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625060 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 2.56e-78
Identity = 138/151 (91.39%), Postives = 138/151 (91.39%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGG------------ 60
           MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDY GGRYGGG            
Sbjct: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYPGGRYGGGGHYGGGHYGGGG 60

Query: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG 120
           HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG
Sbjct: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG 120

Query: 121 GHHGGGHGGHHGGGHHGLDADVKNLDSHGGG 139
           GHHGGGHGGHHGGGHHGLDADVKNLDSHGGG
Sbjct: 121 GHHGGGHGGHHGGGHHGLDADVKNLDSHGGG 151

BLAST of Cucsat.G9057 vs. ExPASy TrEMBL
Match: A0A5D3DWK2 (Cold and drought-regulated protein CORA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00870 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 4.44e-57
Identity = 124/166 (74.70%), Postives = 127/166 (76.51%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGG-HYGGG-HYGGG 60
           MTYPKTLIG GLLLALLFISSQVSARLLEEDKVK+DGLDYHGG YGGG HYGGG HYGGG
Sbjct: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGGGGHYGGGGHYGGG 60

Query: 61  GHYGGG-HYGGG-HYGGG--GHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGG 120
           GHYGGG HYGGG HYGGG  GHYGGGHYGGGHGLDA+TK+ NDQGLD H    GGHHGGG
Sbjct: 61  GHYGGGGHYGGGGHYGGGHGGHYGGGHYGGGHGLDADTKKLNDQGLDSH----GGHHGGG 120

Query: 121 HGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN 160
           HG                   HGGGHHH      CHHPHCPESVKN
Sbjct: 121 HG-------------------HGGGHHH------CHHPHCPESVKN 137

BLAST of Cucsat.G9057 vs. ExPASy TrEMBL
Match: A0A1S3CJZ6 (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103501826 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 4.44e-57
Identity = 124/166 (74.70%), Postives = 127/166 (76.51%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGG-HYGGG-HYGGG 60
           MTYPKTLIG GLLLALLFISSQVSARLLEEDKVK+DGLDYHGG YGGG HYGGG HYGGG
Sbjct: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGGGGHYGGGGHYGGG 60

Query: 61  GHYGGG-HYGGG-HYGGG--GHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGG 120
           GHYGGG HYGGG HYGGG  GHYGGGHYGGGHGLDA+TK+ NDQGLD H    GGHHGGG
Sbjct: 61  GHYGGGGHYGGGGHYGGGHGGHYGGGHYGGGHGLDADTKKLNDQGLDSH----GGHHGGG 120

Query: 121 HGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN 160
           HG                   HGGGHHH      CHHPHCPESVKN
Sbjct: 121 HG-------------------HGGGHHH------CHHPHCPESVKN 137

BLAST of Cucsat.G9057 vs. ExPASy TrEMBL
Match: A0A6J1IKT3 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.55e-13
Identity = 71/156 (45.51%), Postives = 77/156 (49.36%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDK--VKSDGLDYHGGRYGGGHYGGGHYGGG 60
           M Y KT +  GLLLALLF+SS VSAR LEE K  V+SD   +H                 
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHD---------------- 60

Query: 61  GHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGGHGGH 120
                      H    GH+  GH    HG DAN       GLD    GH GHHGGGHGGH
Sbjct: 61  -----------H----GHHDHGH----HGHDANVD-----GLD----GHHGHHGGGHGGH 107

Query: 121 HGGGHHGLDADVKNLDSHGGGH-HHDHGHHHCHHPH 153
           HG      DADV +LD H G H HHDH  HH HH H
Sbjct: 121 HG-----HDADVDDLDGHHGHHDHHDHHDHHDHHDH 107

BLAST of Cucsat.G9057 vs. ExPASy TrEMBL
Match: A0A6J1F6Z7 (histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.19e-12
Identity = 71/156 (45.51%), Postives = 77/156 (49.36%), Query Frame = 0

Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDK--VKSDGLDYHGGRYGGGHYGGGHYGGG 60
           M Y KT +  GLLLALLFISS VSAR LEE K  V+SDG  +H                 
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHD---------------- 60

Query: 61  GHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHGGHHGGGHGGH 120
                      H    GH+  GH    HG DAN       GLD    GH  HHGGGHGGH
Sbjct: 61  -----------H----GHHDHGH----HGHDANVD-----GLD----GHHEHHGGGHGGH 107

Query: 121 HGGGHHGLDADVKNLDSHGGGH-HHDHGHHHCHHPH 153
           HG      DAD+ +LD H G H HHDH  HH HH H
Sbjct: 121 HG-----HDADIDDLDGHHGHHDHHDHHDHHDHHDH 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_011654035.21.81e-9692.44cold and drought-regulated protein CORA [Cucumis sativus] >KAE8649821.1 hypothet... [more]
XP_008463760.19.17e-5774.70PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo] >KAA00667... [more]
XP_038900076.11.50e-1646.47histidine-rich glycoprotein-like [Benincasa hispida][more]
KAG6591765.12.65e-1446.50hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024647.13.74e-1445.86hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A0A0L4K02.56e-7891.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625060 PE=4 SV=1[more]
A0A5D3DWK24.44e-5774.70Cold and drought-regulated protein CORA-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3CJZ64.44e-5774.70cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A6J1IKT38.55e-1345.51histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=... [more]
A0A6J1F6Z71.19e-1245.51histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 P... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G9057.T2Cucsat.G9057.T2mRNA