Cucsat.G3046 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G3046
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Location	ctg1041: 7061047 .. 7064013 (-)
RNA-Seq Expression	Cucsat.G3046
Synteny	Cucsat.G3046

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAGAAATAGTAATATTTAAGAAAAAGAGAGACGTTAGAGGGAGTGAAAGGCTTATCCAAATCCAAACCTTCCTTCCACACATTTCTGAAGATCAAATTACCTAAACGCTATGGAATTTCAATCCAAATCCCCAAAGAAACTACCTCCCAACACTCATCCATGGCTACTTCTTCTCTACCCACCAAATCCCTTCCCCCATTTTTGCCCACTTCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACAAAACCCTTTTTTCTATCCCCACCACTAATTTCTCTCTCAACTTCTTCAAAATTTCAAATCCCCTGTTCCAAGAAGAATCCATGGTTTGACCCATTCGACGACGGCGAGGATCCGGAGATGGAGTACGGCTCTCTCTACTCTGACGGGAAGCAGGAAGAGGATCCTCGGCCGCCGGATAATCCGAACAATCCATATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTCGCTTCCCTGGGTCTCAAAATCCGGGGAGATGTGCGGCGGTGCTGCTGCGTGATCTCTGGGGGTGTTTATGAGAACCTTCTCTTCTTTCCGACGATTCAATTGCTTAAGGATCGGTACCCGGGTGTTCAAATCGATGTGGTGACTTCGGCGAGGGGTAAACAGACTTTTGAATTGAATAAGAATGTGCGATGGTCTAATGTGTATGATCCGGATGATTATTTTCCTGAACCAGCAGAGTATACTGACATGGTTGGATTGCTCAAGGTCGGTTCCAACAATTTACCTTGAATTTGGACAGAACAGTATTGCTAGTGATTCTACATGTTTTGGTGTATGAAAGGTTTTAAATATTGCGATCCTACAGAGACTTCTTTCAAGAAATGGGCTAGACTGACATTTGTAGAGAACAATAGCCAAGGATTATCACGCTTCTACTTGGATATGGAACTTTCATGATGCTCATAATTGGTAGACATAGTAGTGATTTTGAGATCACTTGAAAAGAATTTAGTGCTGCCCATCTTGGCCAACACTCCGATAACTTTCTTTGATTGAGTGGGATGCATTCACTCTGTCCTCGTTTTTCCAATTATGAAACATGACTAAGTGATCCTACCGACATTGGCCCTAGTGTCCAAGTGGTTTGGCCAATAGTGGGTCAAGAAATATTGAATGGTGATGGAGGCAGGGGTTTTCAAGATTGAACAATGGCTGTGGTAGGAATGGTATTTAGGGTGTAATTGGGATATTAAAAGTATGATAGTAATTAATAGGTTTTTATGATATTTGATTATAAATATAGAGGGAGAGGAAAGGAGAAGCTAGCCAATATCTTGGCTTGAGAGTGATCTCAAGAAGGGAGGGTCAAGTACCTCAAATTACTTGGTTTGTTTTGTAGTTTGGTTATTGTTTATATTCCAATATATCAGGTTCTATCAAGTTGTTAGGGAAAAATAAAATTTGAATCTATACCAAACCATCAAATAGGGTGGTCACATTGAATAATTTTGGAATTTGTAGGGTTTAAGCTTTAACTTAGTTAAGTGAGAATTAGAGAAATTCGGACTGATTTGAGTGGTGTAACTGGTTTCATTGTTGTTGCAGGGCAGGTACTATGACATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGGCATGCTGTGTTTTTGTTTATGACAACTGCCAGAGACAGAGTGAGCTACATTTACCCAGATGTGAATGCTGCTGGAGCAGGGCTATTCCTGTCCGAAACATTTAAACCAGAAAGCTCTAATCTTTCTGAGGGAGGGTTCAACATGTGAGAAAATTTTATGGTTTTTGTTATAAATTTGTACAAAAGTTTTCATATAAGCATTTGAGCCTAATATTAGTTTGAGATAGCTTTGGGGTGGGAGTTACTTTGTTGATAATCACTCACTGCGATGTTATGCTTATTTTCTAAGCCACGAAAGGAGGATGCCAATAATGTATATATGGAATATGTTATATTTCTTTAACTTATCAATATAAGCTTTTAGGTTTAGTATAAGACCATAACTTATTAGTTTAAACTTTTAGATTTAGTAGTAGTTTGTTGTTTTTAAATTCAAAAGAATTTGATCGTTTGTCTTTTAGTTAACTCAATCCTCCTCTATGATATGAGGAGCAGTTTCTTGCCTCTAAATGAGAAAAGTGTGGCTTTTATCAGAGGACAATAGTAGTTTTTATATGCAAACTTATGAACCAAAGAGAAATATCTAGCTCAAACTTCTACCTTTTTGATGCCTTGAAGGCCGATTTTCATGATTTAGGTATCATCAAATGGTTGACTGGTTGGGGAGGCCATTTCGTAGTGTTCCCAGGCATCCCGTTCCTCCACTTAAAGTTTCAATTGCGAGGAAATTGAAGGAGGTTATAGCAGAAAAATATAAGAAAGCAGGTGCTGAGAAGGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCGAAAGCCTCCATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCGAGCTTGGGCAGAAATAGCCAAGTGTATAAGGTTGGTACCATGTCAATATCTTCATCGGAAAAAAAGATGCATTATAGGCTTATACAAATGGATTGAAGGAAATAAAAAGTAACTTGATGCTGCTTTTTTCTCTCACTATCTTCTGATGATAATGTTTGTTGAATCTAAATACAGGGGATTCAAGCCAGTCTTTGTCATTCCACATGAAAAGGAACGGGAAAGTGTAGAGGAGGAGGTCGGCAATAATGCAAGCATAGTATTTATCACGACTCCCGGACAGGTATCCATACGATCCTTCTTTCTCTTTTAGTGTTGATGAGTAAACTGCAAAAGGATAAATACACAAAACACAATGTTAACTAAGAAATCAAGGAAAAATGAAGAGGATACGGTTACAAAGAAATTGATAAAAGTTCAGTGCCTAAACATATCATTCTTAACTGCAATGTGTAGCTAGCTGCTCTCATTAATGACTCGGCCGGTCTAATCGCTACCAACACAGCTGCTGTCCAACTTGCCATTGCTCGTGAAAAACCAAGGTATTGTTCTGTTTCTCCTTCATAGAAACTCAATAGTTTGCTTACTGATCTTAAAATCTTCCATCTGCTATGGAAAGAACTGTGGTTGACATGTTATGTGGTGCCAATGTGTTTACAGCATTGCCTTGTTTTGTTCTGAAGAGAAGGCAAAACTATTTGTTCCCAACGCTGAAGCAAAGAGATGCATCACAGTTTCGTCAGCAACAGGACGGCTAATCGACATCGATATGGGAACAATTAAAAAGGCCATACAGAGTTTTGAAGTGCCTCTAGCTCTTGCCTTTCAGTGACATCATAGATTTTTCTTATCCTATTTGTGCTTATCATCTAGATATTCTTTCATTTTGTTTCACCTATGTTACCATTAGTTGTAAATCAAAGCGTTGGCAATGAAAGAAGAGTAATTGTATATGTTGTGCCTGGTGTAGCTATTTTTTCAGAGTTGTTCTCCATTTGTTTTCTTCCTAAGTGGCTTGTTTTGGTTTTGGGAAACACCAAACTTAAGTTCTGACAAGGTAAGTCAAGATTCATTTGGGCCTCTCAAATTCATTCTTACAAAAAATCTCACATTGTTCTCT

Coding sequence (CDS)

ATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGGCATGCTGTGTTTTTGTTTATGACAACTGCCAGAGACAGAGTGAGCTACATTTACCCAGATGTGAATGCTGCTGGAGCAGGGCTATTCCTGTCCGAAACATTTAAACCAGAAAGCTCTAATCTTTCTGAGGGAGGGTTCAACATGTATCATCAAATGGTTGACTGGTTGGGGAGGCCATTTCGTAGTGTTCCCAGGCATCCCGTTCCTCCACTTAAAGTTTCAATTGCGAGGAAATTGAAGGAGGTTATAGCAGAAAAATATAAGAAAGCAGGTGCTGAGAAGGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCGAAAGCCTCCATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCGAGCTTGGGCAGAAATAGCCAAGTGTATAAGGGGATTCAAGCCAGTCTTTGTCATTCCACATGAAAAGGAACGGGAAAGTGTAGAGGAGGAGGTCGGCAATAATGCAAGCATAGTATTTATCACGACTCCCGGACAGCTAGCTGCTCTCATTAATGACTCGGCCGGTCTAATCGCTACCAACACAGCTGCTGTCCAACTTGCCATTGCTCGTGAAAAACCAAGCATTGCCTTGTTTTGTTCTGAAGAGAAGGCAAAACTATTTGTTCCCAACGCTGAAGCAAAGAGATGCATCACAGTTTCGTCAGCAACAGGACGGCTAATCGACATCGATATGGGAACAATTAAAAAGGCCATACAGAGTTTTGAAGTGCCTCTAGCTCTTGCCTTTCAGTGA

Protein sequence

MVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVSSATGRLIDIDMGTIKKAIQSFEVPLALAFQ

Homology

[Close]

BLAST of Cucsat.G3046 vs. ExPASy Swiss-Prot
Match: Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.3e-108
Identity = 201/268 (75.00%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAGLGHA FLFMTTARDRVSYIYP+VN+AGAGL LSETF  E++NLSE 
Sbjct: 193 GRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSEL 252

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           G++MY QM DWLGRPFRSVPR P+ PL+VSI+RK+KEV+A KY+ AGA  GK+IVIHGIE
Sbjct: 253 GYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIE 312

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGD DSLL +  WA+I K +RGFKPVFVIPHEKERE+VE+ VG++ SIVFI
Sbjct: 313 SDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFI 372

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAK-RCITV 244
           TTPGQLAALINDSAG+IATNTAA+QLA AR+KP I LF SEEK KLFVP AE K  C+ +
Sbjct: 373 TTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLFVPYAEEKSNCVII 432

Query: 245 SSATGRLIDIDMGTIKKAIQSFEVPLAL 272
           +S TG+L DID+GT+K A+Q FE  LAL
Sbjct: 433 ASKTGKLADIDIGTVKNAMQVFEGSLAL 460

[Close]

BLAST of Cucsat.G3046 vs. NCBI nr
Match: XP_004136098.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus] >KGN45218.1 hypothetical protein Csa_015823 [Cucumis sativus])

HSP 1 Score: 525 bits (1352), Expect = 1.55e-184
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG
Sbjct: 197 GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 256

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKY+KAGAEKGKYIVIHGIE
Sbjct: 257 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYRKAGAEKGKYIVIHGIE 316

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI
Sbjct: 317 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 376

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS
Sbjct: 377 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 436

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           SATGRLIDIDMGTIKKAIQSFEVPLALAFQ
Sbjct: 437 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Cucsat.G3046 vs. NCBI nr
Match: KAA0058709.1 (photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK10515.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa])

HSP 1 Score: 517 bits (1332), Expect = 1.70e-181
Identity = 264/270 (97.78%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG
Sbjct: 197 GRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 256

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAG EKGKYIVIHGIE
Sbjct: 257 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGVEKGKYIVIHGIE 316

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPIRAWAEIA CIRGFKPVFVIPHEKERE+VEEEVGNNASIVFI
Sbjct: 317 SDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPHEKERENVEEEVGNNASIVFI 376

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVP+AEAKRCITVS
Sbjct: 377 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCITVS 436

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           S TGRLIDIDMGTIKKAIQSFEVPLALAFQ
Sbjct: 437 STTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Cucsat.G3046 vs. NCBI nr
Match: XP_008461180.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis melo])

HSP 1 Score: 514 bits (1324), Expect = 2.80e-180
Identity = 263/270 (97.41%), Postives = 266/270 (98.52%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG
Sbjct: 197 GRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 256

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAG EKGKYIVIHGIE
Sbjct: 257 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGVEKGKYIVIHGIE 316

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPIRAWAEIA CIRGFKPVFVIP EKERE+VEEEVGNNASIVFI
Sbjct: 317 SDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPREKERENVEEEVGNNASIVFI 376

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVP+AEAKRCITVS
Sbjct: 377 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCITVS 436

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           S TGRLIDIDMGTIKKAIQSFEVPLALAFQ
Sbjct: 437 STTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Cucsat.G3046 vs. NCBI nr
Match: XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 504 bits (1299), Expect = 2.03e-176
Identity = 255/270 (94.44%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKP+SSNLSEG
Sbjct: 201 GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPDSSNLSEG 260

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKEV+AEKYKKAGAEKGKYIVIHGIE
Sbjct: 261 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVAEKYKKAGAEKGKYIVIHGIE 320

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPI+AWAEIA  +RGFKPVFVIPHEKERE+VEEEVG++ASIVFI
Sbjct: 321 SDSKASMQSKGDTDSLLPIQAWAEIANAVRGFKPVFVIPHEKERENVEEEVGDDASIVFI 380

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAG+IATNTAAVQLAIAREKPSIALFCSEEKAKLFVP+AEAKRCITVS
Sbjct: 381 TTPGQLAALINDSAGVIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCITVS 440

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           SATGRL DID+GT+KKAIQSFEVPLALAFQ
Sbjct: 441 SATGRLTDIDLGTVKKAIQSFEVPLALAFQ 470

[Close]

BLAST of Cucsat.G3046 vs. NCBI nr
Match: XP_022992479.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 495 bits (1275), Expect = 9.35e-173
Identity = 248/270 (91.85%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNAAGAGLFLS+TFKPESSNLSEG
Sbjct: 202 GRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPESSNLSEG 261

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQM DWLGRPFRSVPRHPVPPLKVSI+RKLKE++ EKY +AG EKGKYIVIHGIE
Sbjct: 262 GFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIE 321

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPI+AWAEIA  IRGFKPVFVIPHEKERE+VEEEVG+NASIVFI
Sbjct: 322 SDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVFI 381

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCSEEKAKLFVP+AEAKRCI VS
Sbjct: 382 TTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCIAVS 441

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           SATGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 442 SATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Cucsat.G3046 vs. ExPASy TrEMBL
Match: A0A0A0K6S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1)

HSP 1 Score: 525 bits (1352), Expect = 7.49e-185
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG
Sbjct: 197 GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 256

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKY+KAGAEKGKYIVIHGIE
Sbjct: 257 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYRKAGAEKGKYIVIHGIE 316

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI
Sbjct: 317 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 376

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS
Sbjct: 377 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 436

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           SATGRLIDIDMGTIKKAIQSFEVPLALAFQ
Sbjct: 437 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Cucsat.G3046 vs. ExPASy TrEMBL
Match: A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)

HSP 1 Score: 517 bits (1332), Expect = 8.23e-182
Identity = 264/270 (97.78%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG
Sbjct: 197 GRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 256

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAG EKGKYIVIHGIE
Sbjct: 257 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGVEKGKYIVIHGIE 316

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPIRAWAEIA CIRGFKPVFVIPHEKERE+VEEEVGNNASIVFI
Sbjct: 317 SDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPHEKERENVEEEVGNNASIVFI 376

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVP+AEAKRCITVS
Sbjct: 377 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCITVS 436

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           S TGRLIDIDMGTIKKAIQSFEVPLALAFQ
Sbjct: 437 STTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Cucsat.G3046 vs. ExPASy TrEMBL
Match: A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 514 bits (1324), Expect = 1.36e-180
Identity = 263/270 (97.41%), Postives = 266/270 (98.52%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG
Sbjct: 197 GRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 256

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAG EKGKYIVIHGIE
Sbjct: 257 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGVEKGKYIVIHGIE 316

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPIRAWAEIA CIRGFKPVFVIP EKERE+VEEEVGNNASIVFI
Sbjct: 317 SDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPREKERENVEEEVGNNASIVFI 376

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVP+AEAKRCITVS
Sbjct: 377 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCITVS 436

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           S TGRLIDIDMGTIKKAIQSFEVPLALAFQ
Sbjct: 437 STTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Cucsat.G3046 vs. ExPASy TrEMBL
Match: A0A6J1JXN2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488799 PE=4 SV=1)

HSP 1 Score: 495 bits (1275), Expect = 4.53e-173
Identity = 248/270 (91.85%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNAAGAGLFLS+TFKPESSNLSEG
Sbjct: 202 GRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPESSNLSEG 261

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQM DWLGRPFRSVPRHPVPPLKVSI+RKLKE++ EKY +AG EKGKYIVIHGIE
Sbjct: 262 GFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIE 321

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPI+AWAEIA  IRGFKPVFVIPHEKERE+VEEEVG+NASIVFI
Sbjct: 322 SDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVFI 381

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCSEEKAKLFVP+AEAKRCI VS
Sbjct: 382 TTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCIAVS 441

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           SATGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 442 SATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Cucsat.G3046 vs. ExPASy TrEMBL
Match: A0A6J1GNJ2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456057 PE=4 SV=1)

HSP 1 Score: 494 bits (1273), Expect = 9.12e-173
Identity = 247/270 (91.48%), Postives = 263/270 (97.41%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNAAGAGLFLS+TFKP+SSNLSEG
Sbjct: 202 GRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSEG 261

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++ EKY +AG EKGKYIVIHGIE
Sbjct: 262 GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIE 321

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGDTDSLLPI+AWAEIA  IRGFKPVFVIPHEKERE+VEEEVG+NASIVFI
Sbjct: 322 SDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVFI 381

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAKRCITVS 244
           TTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCSEEKAKLFVP++EAKRCI VS
Sbjct: 382 TTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDSEAKRCIAVS 441

Query: 245 SATGRLIDIDMGTIKKAIQSFEVPLALAFQ 274
           SATGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 442 SATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Cucsat.G3046 vs. TAIR 10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 394.0 bits (1011), Expect = 9.5e-110
Identity = 201/268 (75.00%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 5   GRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFLSETFKPESSNLSEG 64
           GRYYDMVLSTKLAGLGHA FLFMTTARDRVSYIYP+VN+AGAGL LSETF  E++NLSE 
Sbjct: 193 GRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSEL 252

Query: 65  GFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAEKYKKAGAEKGKYIVIHGIE 124
           G++MY QM DWLGRPFRSVPR P+ PL+VSI+RK+KEV+A KY+ AGA  GK+IVIHGIE
Sbjct: 253 GYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIE 312

Query: 125 SDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIPHEKERESVEEEVGNNASIVFI 184
           SDSKASMQSKGD DSLL +  WA+I K +RGFKPVFVIPHEKERE+VE+ VG++ SIVFI
Sbjct: 313 SDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFI 372

Query: 185 TTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSEEKAKLFVPNAEAK-RCITV 244
           TTPGQLAALINDSAG+IATNTAA+QLA AR+KP I LF SEEK KLFVP AE K  C+ +
Sbjct: 373 TTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLFVPYAEEKSNCVII 432

Query: 245 SSATGRLIDIDMGTIKKAIQSFEVPLAL 272
           +S TG+L DID+GT+K A+Q FE  LAL
Sbjct: 433 ASKTGKLADIDIGTVKNAMQVFEGSLAL 460

The following BLAST results are available for this feature:

BLAST of Cucsat.G3046 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9N6	1.3e-108	75.00	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Cucsat.G3046 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136098.1	1.55e-184	99.63	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus] >K...	[more]
KAA0058709.1	1.70e-181	97.78	photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK1051...	[more]
XP_008461180.1	2.80e-180	97.41	PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis ...	[more]
XP_038896546.1	2.03e-176	94.44	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]	[more]
XP_022992479.1	9.35e-173	91.85	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cucsat.G3046 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6S9	7.49e-185	99.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1	[more]
A0A5A7UYW0	8.23e-182	97.78	Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CEK1	1.36e-180	97.41	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1JXN2	4.53e-173	91.85	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima ...	[more]
A0A6J1GNJ2	9.12e-173	91.48	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschat...	[more]

BLAST of Cucsat.G3046 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15980.1	9.5e-110	75.00	NDH-dependent cyclic electron flow 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.2000	Glycogen Phosphorylase B;	coord: 31..196 e-value: 9.4E-12 score: 47.0
None	No IPR available	SUPERFAMILY	53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 14..193
IPR044983	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic	PANTHER	PTHR37698	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	coord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G3046.T2	Cucsat.G3046.T2	mRNA
Cucsat.G3046.T8	Cucsat.G3046.T8	mRNA
Cucsat.G3046.T4	Cucsat.G3046.T4	mRNA
Cucsat.G3046.T7	Cucsat.G3046.T7	mRNA
Cucsat.G3046.T1	Cucsat.G3046.T1	mRNA
Cucsat.G3046.T3	Cucsat.G3046.T3	mRNA
Cucsat.G3046.T5	Cucsat.G3046.T5	mRNA
Cucsat.G3046.T6	Cucsat.G3046.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016757	glycosyltransferase activity