Cp4.1LG16g07160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g07160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG16: 7382116 .. 7382919 (+)
RNA-Seq Expression	Cp4.1LG16g07160
Synteny	Cp4.1LG16g07160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCGTCTCTCGCCGGTCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCCTCACCATGAGGAAAACCGGTGGTAGACCCAAGCCTGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTCTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCTATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTCGCTGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACCGGCAAAGGGCCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTCCCTGGAAAGTGA

mRNA sequence

ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCGTCTCTCGCCGGTCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCCTCACCATGAGGAAAACCGGTGGTAGACCCAAGCCTGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTCTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCTATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTCGCTGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACCGGCAAAGGGCCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTCCCTGGAAAGTGA

Coding sequence (CDS)

ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCGTCTCTCGCCGGTCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCCTCACCATGAGGAAAACCGGTGGTAGACCCAAGCCTGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTCTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCTATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTCGCTGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACCGGCAAAGGGCCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTCCCTGGAAAGTGA

Protein sequence

MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK

Homology

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy Swiss-Prot
Match: P12333 (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 1.9e-144
Identity = 243/267 (91.01%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA+S+MALSSPSLAG+AVKL P+AS+I+GE R+TMRKT G+PK V S SPWYGPDRVKYL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWNFATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 6.2e-143
Identity = 242/267 (90.64%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPS AG+AVKLSPS+S+I G  ++TMRKT  + K VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy Swiss-Prot
Match: P04783 (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB91R PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.0e-142
Identity = 242/267 (90.64%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAA++MALSSPS AG+AVK SPS+S+I G  + TMRKT  + KPVSSGSPWYGPDRVKYL
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy Swiss-Prot
Match: P27491 (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 6.9e-142
Identity = 240/267 (89.89%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           M AS+MALSSPS AG AVKLSPS+S+I G  +  MRKT  + KPVSSGSPWYGPDRVKYL
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA+EGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+TDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           L+NL DHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LDNLVDHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy Swiss-Prot
Match: P07369 (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB3C PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 6.9e-142
Identity = 241/267 (90.26%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA S+MALSS + AG+AVKLSPS+S+I G  R+TMRKT  + KP SSGSPWYGPDRVKYL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. NCBI nr
Match: XP_023513324.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543 bits (1400), Expect = 4.30e-195
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. NCBI nr
Match: XP_022944462.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata])

HSP 1 Score: 542 bits (1397), Expect = 1.23e-194
Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSPSASDILGESR+TMRKTGGRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. NCBI nr
Match: XP_022986017.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima])

HSP 1 Score: 540 bits (1392), Expect = 7.14e-194
Identity = 265/267 (99.25%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSPSAS+ILGESR+TMRKTGGRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASNILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. NCBI nr
Match: KAG6570576.1 (hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 542 bits (1397), Expect = 8.38e-194
Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSPSASDILGESR+TMRKTGGRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. NCBI nr
Match: XP_008456347.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA0054604.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa] >TYK27568.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa])

HSP 1 Score: 535 bits (1377), Expect = 1.38e-191
Identity = 260/267 (97.38%), Postives = 265/267 (99.25%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy TrEMBL
Match: A0A6J1FVQ6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448911 PE=3 SV=1)

HSP 1 Score: 542 bits (1397), Expect = 5.97e-195
Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSPSASDILGESR+TMRKTGGRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy TrEMBL
Match: A0A6J1J6F4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483879 PE=3 SV=1)

HSP 1 Score: 540 bits (1392), Expect = 3.46e-194
Identity = 265/267 (99.25%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSPSAS+ILGESR+TMRKTGGRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASNILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy TrEMBL
Match: A0A5D3DVR3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00410 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 6.69e-192
Identity = 260/267 (97.38%), Postives = 265/267 (99.25%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy TrEMBL
Match: A0A1S3C301 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496313 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 6.69e-192
Identity = 260/267 (97.38%), Postives = 265/267 (99.25%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. ExPASy TrEMBL
Match: A0A0A0KGD7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G139750 PE=3 SV=1)

HSP 1 Score: 533 bits (1373), Expect = 2.73e-191
Identity = 259/267 (97.00%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPS AGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-136
Identity = 235/268 (87.69%), Postives = 252/268 (94.03%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+ AG+AVKLSP+AS++LG  R+TMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           P+ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 480.3 bits (1235), Expect = 9.9e-136
Identity = 234/268 (87.31%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+ AG+AV LSP+AS++LG  R+TMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           P+ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 480.3 bits (1235), Expect = 9.9e-136
Identity = 234/268 (87.31%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+ AG+AV LSP+AS++LG  R+TMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           P+ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Cp4.1LG16g07160 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 479.2 bits (1232), Expect = 2.2e-135
Identity = 234/268 (87.31%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+L G+AVKLSP+AS++ G  R+TMRK      P  SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGP--SGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           PLENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of Cp4.1LG16g07160 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 478.4 bits (1230), Expect = 3.7e-135
Identity = 235/268 (87.69%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRLTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA+S+MALSSP+ AG+AVK  P+ASD+LG  R+TMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           PLENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g07160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12333	1.9e-144	91.01	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1...	[more]
P27495	6.2e-143	90.64	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P04783	4.0e-142	90.64	Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB...	[more]
P27491	6.9e-142	89.89	Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]
P07369	6.9e-142	90.26	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=408...	[more]

BLAST of Cp4.1LG16g07160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513324.1	4.30e-195	100.00	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita pepo subsp. pepo...	[more]
XP_022944462.1	1.23e-194	99.63	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata]	[more]
XP_022986017.1	7.14e-194	99.25	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima]	[more]
KAG6570576.1	8.38e-194	99.63	hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008456347.1	1.38e-191	97.38	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA00...	[more]

BLAST of Cp4.1LG16g07160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVQ6	5.97e-195	99.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6F4	3.46e-194	99.25	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DVR3	6.69e-192	97.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C301	6.69e-192	97.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KGD7	2.73e-191	97.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of Cp4.1LG16g07160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	2.6e-136	87.69	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	9.9e-136	87.31	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	9.9e-136	87.31	chlorophyll A/B-binding protein 2	[more]
AT2G34430.1	2.2e-135	87.31	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT2G34420.1	3.7e-135	87.69	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 58..260 e-value: 7.5E-91 score: 305.5
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..233 e-value: 1.3E-49 score: 168.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..267
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 50..264
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g07160.1	Cp4.1LG16g07160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding