Cp4.1LG09g11320.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g11320.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG09: 9697653 .. 9697862 (-)
Sequence length210
RNA-Seq ExpressionCp4.1LG09g11320.1
SyntenyCp4.1LG09g11320.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

mRNA sequence

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Coding sequence (CDS)

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Protein sequence

MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYGGGCAAGCGA
Homology
BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134 bits (337), Expect = 1.94e-39
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          MARLIGEIGSV+GSF LSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60

Query: 61 GGCAAGCGA 69
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 69

BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (261), Expect = 8.85e-28
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGIS-KERNSTADVELY 60
          MARL+ E GS NGSF L+GDI  LF AALFTLCIIS I FSCSDG+S K+RNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGA 69
          G GCAAGCGA
Sbjct: 61 GAGCAAGCGA 70

BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.34e-25
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S NGSF L+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 89 GGGCAAGCGA 98

BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 77.8 bits (190), Expect = 6.08e-17
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   V+G    S  G     FL  L TLCI+S I FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

BLAST of Cp4.1LG09g11320.1 vs. NCBI nr
Match: KAF3438595.1 (hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis])

HSP 1 Score: 77.0 bits (188), Expect = 1.13e-16
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 7  EIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYGGGCAAG 66
           + SV+GS   +G +  L+LA L ++CI+S I FSC+DG+SKE+ STAD ELYGGGCAAG
Sbjct: 3  RLSSVDGSSSYAGFLVYLWLA-LLSVCILSAIIFSCTDGVSKEKTSTADTELYGGGCAAG 62

Query: 67 CGA 69
          CGA
Sbjct: 63 CGA 64

BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.18e-25
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S NGSF L+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.94e-17
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLS--GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVEL 60
          M RL  E   V+G    S  G     FL  L TLCI+S I FSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGA 69
          YGGGCAAGCGA
Sbjct: 61 YGGGCAAGCGA 71

BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.49e-16
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          M RL  ++ SV+GS   S     L+LA L  +CIIS I FSC+DG+SKE+ STAD ELYG
Sbjct: 1  MVRLWRDLASVHGSG--SAGFVVLWLA-LLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGA 69
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 66

BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.66e-16
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRL-SGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          M RL  E+ +V+G     SG      L  L TLCI+S I FSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

BLAST of Cp4.1LG09g11320.1 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.66e-16
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 1  MARLIGEIGSVNGSFRL-SGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          M RL  E+ +V+G     SG      L  L TLCI+S I FSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGA 69
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572949.11.94e-3997.10hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6584341.18.85e-2878.57hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652552.15.34e-2572.86hypothetical protein Csa_013579 [Cucumis sativus][more]
PON38946.16.08e-1757.75hypothetical protein PanWU01x14_308610 [Parasponia andersonii][more]
KAF3438595.11.13e-1660.32hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
A0A0A0LQU71.18e-2572.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1[more]
A0A2P5AQX42.94e-1757.75Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE... [more]
A0A6P3ZT851.49e-1660.87uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860... [more]
A0A803R0051.66e-1655.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803R0041.66e-1655.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199TRANSMEMBRANE PROTEINcoord: 1..69
NoneNo IPR availablePANTHERPTHR37199:SF2MEMBRANE LIPOPROTEIN-RELATEDcoord: 1..69

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG09g11320Cp4.1LG09g11320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG09g11320.1:exon:001Cp4.1LG09g11320.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG09g11320.1:cds:001Cp4.1LG09g11320.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG09g11320.1Cp4.1LG09g11320.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane