Cp4.1LG09g09550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g09550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor CAULIFLOWER-like
Location	Cp4.1LG09: 8552925 .. 8553461 (-)
RNA-Seq Expression	Cp4.1LG09g09550
Synteny	Cp4.1LG09g09550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATAAATTACAGGCATTTTTCTGGTGAGGATCTCGAACCGTTGACAGTTAAGGAGTTAAAACGGTTAGAGAGACAACTAAGCGTCGGAATCGAACGTGTCCGCTCTAAAATGGTAAATCGTAGCTAATAAATCCTTAAATTAAATAATTTAAAAATTTATTAAACACTTTCTAAATTTTATTTTCGACAGAGACGAATTATATCAGAACATACAAATCAGCTCAAGAAGAAGGTAAAATCATCGATTTTTACTTCGAGATTCTTATCAGTTATAGTTATAAAAATTAACTGTTGGGTTAAATTAAAATTTACTGCAGTATAAGGGTCTGCAAGAGGAGCATAGCCGTCTGCAGAAGAGAGTAAAAAATTTTCCAAAATTTACCTCTAGAATTAATTTTACCATACTTTTATTTATTATTTATTATTTATTTAATGTTTTATGTATTTTCAGCTGAACCAGCTTAAGGATGTGGCTGACACGACCGCAAAAGTCTCAGATGCTGATGGTGTCTCAGTACTCGAAATGTTTGTATAA

mRNA sequence

ATAATAAATTACAGGCATTTTTCTGGTGAGGATCTCGAACCGTTGACAGTTAAGGAGTTAAAACGGTTAGAGAGACAACTAAGCGTCGGAATCGAACGTGTCCGCTCTAAAATGAGACGAATTATATCAGAACATACAAATCAGCTCAAGAAGAAGTATAAGGGTCTGCAAGAGGAGCATAGCCGTCTGCAGAAGAGACTGAACCAGCTTAAGGATGTGGCTGACACGACCGCAAAAGTCTCAGATGCTGATGGTGTCTCAGTACTCGAAATGTTTGTATAA

Coding sequence (CDS)

ATAATAAATTACAGGCATTTTTCTGGTGAGGATCTCGAACCGTTGACAGTTAAGGAGTTAAAACGGTTAGAGAGACAACTAAGCGTCGGAATCGAACGTGTCCGCTCTAAAATGAGACGAATTATATCAGAACATACAAATCAGCTCAAGAAGAAGTATAAGGGTCTGCAAGAGGAGCATAGCCGTCTGCAGAAGAGACTGAACCAGCTTAAGGATGTGGCTGACACGACCGCAAAAGTCTCAGATGCTGATGGTGTCTCAGTACTCGAAATGTTTGTATAA

Protein sequence

IINYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQKRLNQLKDVADTTAKVSDADGVSVLEMFV

Homology

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy Swiss-Prot
Match: Q39081 (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana OX=3702 GN=CAL PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-09
Identity = 28/74 (37.84%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RH+ GE+LEP+++K+L+ LE+QL   ++ +RS+  ++++E  N L++K K +QEE+S 
Sbjct: 110 NQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSM 169

Query: 63  LQKRLNQLKDVADT 77
           L K++ + +++  T
Sbjct: 170 LTKQIKERENILRT 183

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy Swiss-Prot
Match: D7KQR8 (Transcription factor CAULIFLOWER OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=CAL PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-09
Identity = 28/74 (37.84%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RH+ GEDLEP+++K+L+ LE+QL   ++ +RS+  +++ E  N L++K   +QEE+S 
Sbjct: 110 NQRHYLGEDLEPMSLKDLQNLEQQLETALKHIRSRKNQLMYESLNHLQRKENEIQEENSM 169

Query: 63  LQKRLNQLKDVADT 77
           L K++ + +++  T
Sbjct: 170 LTKQIKERENILRT 183

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy Swiss-Prot
Match: D7SMN6 (Agamous-like MADS-box protein FUL-L OS=Vitis vinifera OX=29760 GN=FULL PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RHF GEDL+PL+++EL+ LE+QL   ++R+R++  +++ E  ++L+KK K L E+++ 
Sbjct: 108 NLRHFVGEDLDPLSLRELQNLEQQLDTALKRIRTRKNQLMHESISELQKKEKSLVEQNNA 167

Query: 63  LQKRLNQLKDV 74
           L K++ + + V
Sbjct: 168 LAKKVKEKEKV 178

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy Swiss-Prot
Match: Q39375 (Transcription factor CAULIFLOWER OS=Brassica oleracea var. italica OX=36774 GN=CAL PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RH+ GEDLE +++KEL+ LE+QL   ++ +RS+  +++ E  N L++K K + EE+S 
Sbjct: 110 NQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEILEENSM 169

Query: 63  LQKRLNQLKDVADTTAKVSD 83
           L K++ + + +  T    S+
Sbjct: 170 LAKQIRERESILRTHQNQSE 189

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy Swiss-Prot
Match: Q6R4S6 (Transcription factor CAULIFLOWER OS=Brassica rapa subsp. chinensis OX=93385 GN=CAL PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RH+ GEDLE +++KEL+ LE+QL   ++ +RS+  +++ E  N L++K K + EE+S 
Sbjct: 110 NQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEILEENSM 169

Query: 63  LQKRLNQLKDVADTTAKVSD 83
           L K++ + + +  T    S+
Sbjct: 170 LTKQIKERESILRTHQNQSE 189

[Close]

BLAST of Cp4.1LG09g09550 vs. NCBI nr
Match: XP_023542775.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166 bits (421), Expect = 3.92e-50
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ
Sbjct: 107 RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEMFV 93
           KRLNQLKDVADTTAKVSDADGVSVLEMFV
Sbjct: 167 KRLNQLKDVADTTAKVSDADGVSVLEMFV 195

[Close]

BLAST of Cp4.1LG09g09550 vs. NCBI nr
Match: XP_022955225.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata])

HSP 1 Score: 161 bits (408), Expect = 3.70e-48
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHFSGEDLEPLT+KELKRLERQLSVGIERVRSKMRRIISEHT+QLKKKYKGLQEEHSRLQ
Sbjct: 107 RHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEMFV 93
           KRLNQLKDVADTT +VSDADGVSVLEMFV
Sbjct: 167 KRLNQLKDVADTTTRVSDADGVSVLEMFV 195

[Close]

BLAST of Cp4.1LG09g09550 vs. NCBI nr
Match: KAG6573136.1 (MADS-box transcription factor 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 3.70e-48
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHFSGEDLEPLT+KELKRLERQLSVGIERVRSKMRRIISEHT+QLKKKYKGLQEEHSRLQ
Sbjct: 107 RHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEMFV 93
           KRLNQLKDVADTT +VSDADGVSVLEMFV
Sbjct: 167 KRLNQLKDVADTTTRVSDADGVSVLEMFV 195

[Close]

BLAST of Cp4.1LG09g09550 vs. NCBI nr
Match: XP_022994475.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita maxima])

HSP 1 Score: 159 bits (403), Expect = 2.12e-47
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHFSGEDLEPLT+KELKRLERQLSVGIERVRSKMRRIISEHT+QLKKKYKGLQEEHSRLQ
Sbjct: 107 RHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEMFV 93
           KRLNQLKDVA+TT ++SDADGVSVLEMFV
Sbjct: 167 KRLNQLKDVAETTTRISDADGVSVLEMFV 195

[Close]

BLAST of Cp4.1LG09g09550 vs. NCBI nr
Match: KAG7012321.1 (MADS-box transcription factor 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (377), Expect = 2.66e-43
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 6   HFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQK 65
           HFSGEDLEPLT+KELKRLERQLSVGIERVRSKMRRIISEHT+QLKKKYKGLQEEHSRLQK
Sbjct: 108 HFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQK 167

Query: 66  RLNQLKDVADTTAKVSDADGVS-VLEM 91
           RLNQLKDVADTT +VSDADGVS VL M
Sbjct: 168 RLNQLKDVADTTTRVSDADGVSDVLSM 194

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy TrEMBL
Match: A0A6J1GUK4 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111457252 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 1.79e-48
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHFSGEDLEPLT+KELKRLERQLSVGIERVRSKMRRIISEHT+QLKKKYKGLQEEHSRLQ
Sbjct: 107 RHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEMFV 93
           KRLNQLKDVADTT +VSDADGVSVLEMFV
Sbjct: 167 KRLNQLKDVADTTTRVSDADGVSVLEMFV 195

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy TrEMBL
Match: A0A6J1K1A3 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita maxima OX=3661 GN=LOC111490186 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 1.03e-47
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHFSGEDLEPLT+KELKRLERQLSVGIERVRSKMRRIISEHT+QLKKKYKGLQEEHSRLQ
Sbjct: 107 RHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEMFV 93
           KRLNQLKDVA+TT ++SDADGVSVLEMFV
Sbjct: 167 KRLNQLKDVAETTTRISDADGVSVLEMFV 195

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy TrEMBL
Match: A0A6J1KKG0 (MADS-box transcription factor 6-like OS=Cucurbita maxima OX=3661 GN=LOC111495387 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.37e-35
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           R+F+GEDL PL++KELK+LERQ+S+GIERVRSK RRI SEH NQLK+KYKGLQEEHSRLQ
Sbjct: 107 RNFAGEDLGPLSLKELKQLERQMSIGIERVRSKKRRITSEHVNQLKRKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTAKVSDADGVSVLEM 91
           KRLNQLKDVA TT+++SDA+  S  EM
Sbjct: 167 KRLNQLKDVAVTTSRISDANAFSAFEM 193

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy TrEMBL
Match: A0A1S3B0H5 (transcription factor CAULIFLOWER-like OS=Cucumis melo OX=3656 GN=LOC103484527 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 8.21e-35
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHF GEDLEPL+VKELK+LERQ+SVGIER+RSK RR ++EH N LK+KYKGLQEEHSRLQ
Sbjct: 16  RHFVGEDLEPLSVKELKQLERQMSVGIERIRSKKRRFLAEHINLLKRKYKGLQEEHSRLQ 75

Query: 65  KRLNQLKDVADTTA-KVSDADGVSVLEM 91
           KRLNQLKDV  TT+ ++SDA+  S LEM
Sbjct: 76  KRLNQLKDVVVTTSSRISDANPTSALEM 103

[Close]

BLAST of Cp4.1LG09g09550 vs. ExPASy TrEMBL
Match: A0A5A7UJH6 (Transcription factor CAULIFLOWER D-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004780 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 8.77e-34
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RHF GEDLEPL+VKELK+LERQ+SVGIER+RSK RR ++EH N LK+KYKGLQEEHSRLQ
Sbjct: 107 RHFVGEDLEPLSVKELKQLERQMSVGIERIRSKKRRFLAEHINLLKRKYKGLQEEHSRLQ 166

Query: 65  KRLNQLKDVADTTA-KVSDADGVSVLEM 91
           KRLNQLKDV  TT+ ++SDA+  S LEM
Sbjct: 167 KRLNQLKDVVVTTSSRISDANPTSALEM 194

[Close]

BLAST of Cp4.1LG09g09550 vs. TAIR 10
Match: AT1G26310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 28/74 (37.84%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RH+ GE+LEP+++K+L+ LE+QL   ++ +RS+  ++++E  N L++K K +QEE+S 
Sbjct: 110 NQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSM 169

Query: 63  LQKRLNQLKDVADT 77
           L K++ + +++  T
Sbjct: 170 LTKQIKERENILRT 183

[Close]

BLAST of Cp4.1LG09g09550 vs. TAIR 10
Match: AT1G69120.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-09
Identity = 26/71 (36.62%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N RH+ GEDL+ ++ KEL+ LE+QL   ++ +R++  +++ E  N+L+KK K +QE++S 
Sbjct: 108 NQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSM 167

Query: 63  LQKRLNQLKDV 74
           L K++ + + +
Sbjct: 168 LSKQIKEREKI 178

[Close]

BLAST of Cp4.1LG09g09550 vs. TAIR 10
Match: AT5G60910.1 (AGAMOUS-like 8 )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N R+F GEDL+ L++KEL+ LE QL   I+ +RS+  + + E  + L+KK K LQ+ ++ 
Sbjct: 108 NKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNS 167

Query: 63  LQKRLNQ 70
           L K++ +
Sbjct: 168 LLKKIKE 174

[Close]

BLAST of Cp4.1LG09g09550 vs. TAIR 10
Match: AT5G60910.2 (AGAMOUS-like 8 )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 3   NYRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSR 62
           N R+F GEDL+ L++KEL+ LE QL   I+ +RS+  + + E  + L+KK K LQ+ ++ 
Sbjct: 46  NKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNS 105

Query: 63  LQKRLNQ 70
           L K++ +
Sbjct: 106 LLKKIKE 112

[Close]

BLAST of Cp4.1LG09g09550 vs. TAIR 10
Match: AT3G30260.1 (AGAMOUS-like 79 )

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-05
Identity = 22/68 (32.35%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 5   RHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQ 64
           RH  GE+++ L++++L+ +E QL   +++ RS+  +++ E   QL+KK K L+E   +L 
Sbjct: 110 RHLRGEEVDGLSIRDLQGVEMQLDTALKKTRSRKNQLMVESIAQLQKKEKELKELKKQLT 169

Query: 65  KRLNQLKD 73
           K+  + +D
Sbjct: 170 KKAGERED 177

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g09550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39081	2.4e-09	37.84	Transcription factor CAULIFLOWER OS=Arabidopsis thaliana OX=3702 GN=CAL PE=1 SV=...	[more]
D7KQR8	7.0e-09	37.84	Transcription factor CAULIFLOWER OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN...	[more]
D7SMN6	1.2e-08	39.44	Agamous-like MADS-box protein FUL-L OS=Vitis vinifera OX=29760 GN=FULL PE=2 SV=1	[more]
Q39375	2.0e-08	36.25	Transcription factor CAULIFLOWER OS=Brassica oleracea var. italica OX=36774 GN=C...	[more]
Q6R4S6	2.0e-08	36.25	Transcription factor CAULIFLOWER OS=Brassica rapa subsp. chinensis OX=93385 GN=C...	[more]

BLAST of Cp4.1LG09g09550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542775.1	3.92e-50	100.00	truncated transcription factor CAULIFLOWER D-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955225.1	3.70e-48	95.51	truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata]	[more]
KAG6573136.1	3.70e-48	95.51	MADS-box transcription factor 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022994475.1	2.12e-47	93.26	truncated transcription factor CAULIFLOWER D-like [Cucurbita maxima]	[more]
KAG7012321.1	2.66e-43	93.10	MADS-box transcription factor 6, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Cp4.1LG09g09550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUK4	1.79e-48	95.51	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1K1A3	1.03e-47	93.26	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1KKG0	2.37e-35	75.86	MADS-box transcription factor 6-like OS=Cucurbita maxima OX=3661 GN=LOC111495387...	[more]
A0A1S3B0H5	8.21e-35	75.00	transcription factor CAULIFLOWER-like OS=Cucumis melo OX=3656 GN=LOC103484527 PE...	[more]
A0A5A7UJH6	8.77e-34	75.00	Transcription factor CAULIFLOWER D-like isoform X2 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Cp4.1LG09g09550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26310.1	1.7e-10	37.84	K-box region and MADS-box transcription factor family protein	[more]
AT1G69120.1	4.2e-09	36.62	K-box region and MADS-box transcription factor family protein	[more]
AT5G60910.1	3.0e-07	40.30	AGAMOUS-like 8	[more]
AT5G60910.2	3.0e-07	40.30	AGAMOUS-like 8	[more]
AT3G30260.1	6.3e-05	32.35	AGAMOUS-like 79	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..73
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..76
None	No IPR available	PANTHER	PTHR11945:SF427	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER D-LIKE ISOFORM X1	coord: 3..76
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 4..67 e-value: 3.5E-16 score: 59.2
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 1..73 score: 11.455411

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g09550.1	Cp4.1LG09g09550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding