Cucsat.G7711.T9 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G7711.T9
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Zyxin-like
Location	ctg1546: 253295 .. 257694 (+)
RNA-Seq Expression	Cucsat.G7711.T9
Synteny	Cucsat.G7711.T9

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACATAAGTCACACGCTTTGATCATATTCTTATGTGTTTTGACCTCATTATTCTAATAAGAGAGGTTATAATAACGAATATTTATACATATTATCACTTATTGCGTTATTAGTCGTGCTACATTCATCATTTGGTTAGTGTATGTTGTAAACTGCCCGAGATGGTATGTAGCAAGGATGTGGCTAACACAACAAGGAAGAGTTTTTTTAACCTTGGCAAGATTGTTTTCTTCATTTGTGTCCCAAAAGGTGAACAAGTGTGGATAATAGGCGCCGAGAGGTTGTTGTCCTTAAATGCGAAGCACTTTAAGTAGTATAAGTAAGTACTTCTAGATATACCTCACTAAACTAGGCTTAGGCATTTGAATCCTGAAAGGAGACCAAGGGTGGCGTTCAATGAGTTTGAGTGGAGCACGCCTTAATCATGAGACAGTTCAGCTAGTTACATCGGATTGAGGTGGTCATATAGCTTATTCACCTGGTAACATTAAATATTCCTTCACCCCCTTCGTCTCATGCAAGTTACTGCACCCCTCTTTCTCACCCACTTATCTCTCTCAACCACCTTCACAGCATCTCTAGGATACTTAGGTAGTTATGATTATTTTTATATTATTTTGGTGCTCAATTGATCTTTTCTTTGACCTCATTTCTCTAGAGTTTTCGAACGAGGCCTCCAAAATCACAAACCTTTCTTTGAGATTTTTCTCAAGGAAGTTTAGAGAAATTTGCGATTGTGTTACGAGACCATGCATTGCAGAAGCAGTTCAATAGAAAATTGTGCTTTTCAGATATTCATCCTCTCTTTGAATCTCTCCATTGGTCTTGGCCTTCTATTATGAAATCCTTTTAGCCCTTCATTTGTCAAAGTCTTTCCTTTGGCTCAATGTCAAAAAATTGGGGTGATTTCTTGACTTTCTAGTAGCATTGAATCTCTCATCGGCTACTTTGTCTTAGCTTCCATGATGGGGTTTGTAACCCTTAGTAGCTCCAAGATTTCAATTAGGCATTGGTTCAAATCTTTCACCTTGTCTTCTATAGCAACATAATCATAGTCATCGAAAGGTTTTTTTCGTTGACTAACGGATCTCAGTTGGTGGGAGAATATGATCTGGACAAGGATCCGCCTTGGGTGTTGATCATGATTGGATTTATTATTGATATCTTCAATCAAGTTCTCACGGTTCATGTTAGTTGTTACTCATGGTGTTGATTCCCAATCTTAAGGGTAAGTACAAGCAAAATCTCTCACAGAAGACACCACCTATTGATGTAAAAAATGAATCAACTATAAAGTTGGTTTTTTGAGAAGATTCGTTCGAGTGCCTGTAAGATAAAGAAAGGTAAGCGTGGGTGTGGGTGTGGAGTCTAACCACAGACACTTCGATGCTCAAGTCAATCTTGTGCTTTTGAGTATAATAAGATATTTAGTCTTGTGCTTTTGACTAATTAGGGTGGCTACCATTAATAGGTTAGTATTAAAAATAGTAGTTGGAAGATAGTTGTTGGAAGATAGAAAGCTTAGTTGATGTTTTATTTTAACATTTTGGTATTTGCATTAAATAGACTAGAATCTCTACAAGGCTATATGATGTCTTTATCCTTCCATTTGCAAGGGACCAAGACTTTTGATGAATGAAATTTTATATCCCATATTGAGATTTTTCTCTTAAACTTTGAAGCTCTTGTGATAGAATTCATGCAAGTTATTCAATCGAACCTTGATCAAGTTTAATTATAGAGCGATTCAATTTAGAACAAGATTCCAAATTTTGCTTCTACATCTTCGATCTATGAGGTAATTTAATTCTAACAGTCTCTTGGTTGATCTAAATTAGTATAAAGAGGTAATTTAATTATAACAGTCTCTTGGTTGATCTAAATTAGTATAAAGAGGTGTTAAATTCTCATATTCAAAAGTTCTTGCTAACTTGATAGCTTAGATATTTGATTTGAGGATTAGGATTGCCTTATCATTATTCTTAGGTTTCGCTATACTCATCTTGAGCTCTCTTATAGCTCTTATGAGCTTACTTCTCTTGAGTTTACCTCAAGGATCTCATGTAGCTGTCTAAGCTCTCTTGCATTGTTCCTCTTGAGCCTACCTCATGGGTCTCACAGAGTTGTCCAAACTCTCCCACGTAGGTGCTTTTTTTTAGCGCTCTCCTAGGCTCCTAAAGCTTCTCTTCAGCTTACCCCATGTATGCACCAAGCCTCTTTGTGCTCGCTCAGGGCTATCCAGTGGATTCTCTCGTGCAGGCTAAAGATCACCACAACAAACGTATCCTACGTATGTGTCTCTAAGCTTTACAACTTGTGTTTGTTTTTTCTTATTCAGAACAGAATAAAGATGATGACATCAAGTGATCTGCTTTTAAGTATTAAAGTCCAATTAACCAGATAATTAAAATACTTATTGAAGAGACTTTTTTTGGAGGAAAAAAAAGTTTGAAAATATCAATAATTGAACTATTCAATAAAACCGACCGTTTGAGTCATTAATTTGAGAAGTGATGGGGCAATTTGCGATTAGTAAAAGAAACTTCTCATTCAACAACACTATGTAACAACTTAATTAAGTTAGATAAAATATATCGCAATAGTAATTTGGTTAATAATTTTCATTTTTTTAGTATCAATAGAAGATGAGAGATTCAAAGTTATAGACCTACGAGCGATAAAACTTACTTCTTTGTTGAGCTATGCTTGTTTTGATGGTTTTAAGACAACCATCAATAATTAATTCATACAATCTTTTCTTTTTTGTTATTTCCTTTTCTTTTTTTTTTTTTATTCGAGAAAAGGTTCGCAAAAATCTTCTTTTTACTTTTAAAATTGTTTTTAGTTCAAATTGGAGAGGCAGGGGAATTGGACCATGGACTTCTTAGTTCTCAAAATACACTAATCATATCCATTGATATAAACTGTTATAACTACCGTCATTAACTAAGATTTCTTTTTTTTAAAAGAAGGTTATTGTTGGAAAATTTATGGTAATAAGAGCATATGAGTTTATTTTTTCATGGACAACTATCTTTGTTGATTCTCATCTAATTTCTCTAAGTAGTAATTAAATTCTCTTAAGCACGATATTGGATGTTTTTAGATGAAAGTTAAGATTGTTGAGTTTTAGGCATTAAAATGGACAATTAAAACTGTTTGGGTATAACTTTATCGATTTCAATTTTATTAAGTTGCCTACCAATTATGATTAAACTATAATTCTTGTTTTGGCCAACAAAACCATCTTATATAAACCCTCCACTCCTCCATCCATTTCCACAAGATCAATCTTCTATTCTCCATTTTCTAGTGACCAATATGGAGAAAACACAAACAATTTATCTTCTCTTTCTATTGATTTTATCCATAGCCACAATATCACATTGTCGTGGTACGTATTCAAGAATATTATTTTTTGTTTGTATATATATACGTATACACATATCATGTATGCATGTATTGTAATTCTTTGTTTGTGTATTTACAGTGTTGCTTCATGTTGACCCACAATTTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCCTCCACCACATCGTCATCTTGATTCAGACATTGGTGGCCCACAAATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCGGATGTAGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACATTGGTGGCCCTCAAATGGTCATCTCACCACCTCCTCCGCACAAACATCCACAATCCGATGTTGGCGGGCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGACTGTGACGTTGGTGGCTCTCAAATGGTCATCACACCACCCCCGTCGCACAAATATCCACAATCTGATGTTGGCGGGCCTCAAATGGTCATCTCACCCCCTCCTCCACACCATCATCTTGATTCTGACGTTGGTGGCCCTCAAATGGTCATTTCACCCCCTCCACCACACCATCATCTTGATTCCGATGTTGACGGCCCTCAAATGGTTATTCCCACTCCTCCACCACATCACATTCGCCTTTAAAATCGAACATCGTCGACGACACCCAAATGGTCATCCCACCGCCTCCCCCTCCACATGTTCCATCCACAAAGTAATGTTTAGTGATATCATAACGATAATCCCCTATCTCCTCTATAAAGCAACTTTTATTGCATGCAATTCGATCACAACTTTAGATGTGTGATTCATTTCTTGTCACTTTCCTTGAAGTATTGAGCATAATAAGCTAACAATAATAATAATACTTACTATTATAATTACTATATGTCCATGCATATATATAGTGTATTTAAAAACAAGCTAAG

Coding sequence (CDS)

ATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACATTGGTGGCCCTCAAATGGTCATCTCACCACCTCCTCCGCACAAACATCCACAATCCGATGTTGGCGGGCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGACTGTGACGTTGGTGGCTCTCAAATGGTCATCACACCACCCCCGTCGCACAAATATCCACAATCTGATGTTGGCGGGCCTCAAATGGTCATCTCACCCCCTCCTCCACACCATCATCTTGATTCTGACGTTGGTGGCCCTCAAATGGTCATTTCACCCCCTCCACCACACCATCATCTTGATTCCGATGTTGACGGCCCTCAAATGGTTATTCCCACTCCTCCACCACATCACATTCGCCTTTAAAATCGAACATCGTCGACGACACCCAAATGGTCATCCCACCGCCTCCCCCTCCACATGTTCCATCCACAAAGTAATGTTTAGTGATATCATAACGATAATCCCCTATCTCCTCTATAAAGCAACTTTTATTGCATGCAATTCGATCACAACTTTAGATGTGTGA

Protein sequence

MLVALNWSFHPLHHTIILIRTLVALKWSSHHLLRTNIHNPMLAGLKWSFHPLLHTIILTVTLVALKWSSHHPRRTNIHNLMLAGLKWSSHPLLHTIILILTLVALKWSFHPLHHTIILIPMLTALKWLFPLLHHITFAFKIEHRRRHPNGHPTASPSTCSIHKVMFSDIITIIPYLLYKATFIACNSITTLDV

Homology

[Close]

BLAST of Cucsat.G7711.T9 vs. NCBI nr
Match: KAE8650613.1 (hypothetical protein Csa_010726 [Cucumis sativus])

HSP 1 Score: 145 bits (365), Expect = 5.97e-40
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MLVALNWSFHPLHHTIILIRTLVALKWSSHHLLRTNIHNPMLAGLKWSFHPLLHTIILTV 60
           MLVALNWSFHPLHHTIILIRTLVALKWSSHHLLRTN HN MLA LKWSFHPLLHTIIL +
Sbjct: 21  MLVALNWSFHPLHHTIILIRTLVALKWSSHHLLRTNNHNLMLAVLKWSFHPLLHTIILIL 80

Query: 61  TLVALKWSSHHPRRTNIHNLMLA 83
            LVALKWS HH  RTNIHNLMLA
Sbjct: 81  MLVALKWSFHHLLRTNIHNLMLA 103

[Close]

BLAST of Cucsat.G7711.T9 vs. NCBI nr
Match: KAA0055820.1 (zyxin-like [Cucumis melo var. makuwa] >TYK10071.1 zyxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 7.22e-31
Identity = 67/108 (62.04%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 32  LLRTNIHNPMLAGLKWSFHPLLHTIILTVTLVALKWSSHHPRRTNIHNLMLAGLKWSSHP 91
           LLRTN HN MLAGLKWS+H L H IIL + LVALKW SHH    N  N  LAGLKW    
Sbjct: 66  LLRTNFHNLMLAGLKWSYHYLYHIIILILMLVALKWLSHHLHHINFQNPTLAGLKW---- 125

Query: 92  LLHTIILILTLVALKWSFHPLHHTIILIPMLTALKWLFPLLHHITFAF 139
                           SFHPLHHT ILIPML  LKWLFPLLHHITFAF
Sbjct: 126 ----------------SFHPLHHTNILIPMLATLKWLFPLLHHITFAF 153

[Close]

BLAST of Cucsat.G7711.T9 vs. NCBI nr
Match: KAE8653140.1 (hypothetical protein Csa_019646, partial [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.46e-13
Identity = 41/61 (67.21%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 1  MLVALNWSFHPLHHTIILIRTLVALKWSSHHLLRTNIHNPMLAGLKWSFHPLLHTIILTV 60
          MLV   WSFH LHHTIILIR L ALKW S  L RT+ HN ML  L WSF PL HTIIL  
Sbjct: 1  MLVDHIWSFHHLHHTIILIRMLAALKWLSLLLHRTSFHNLMLVALNWSFQPLHHTIILIR 60

[Close]

BLAST of Cucsat.G7711.T9 vs. NCBI nr
Match: KAE8650608.1 (hypothetical protein Csa_010543 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 3.22e-11
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 51  PLLHTIILTVTLVALKWSSHHPRRTNIHNLMLAGLKWSSHP 91
           PL+HTIIL +TLVALKWSSHH  RTNIHNLMLAGL WSS P
Sbjct: 184 PLIHTIILILTLVALKWSSHHLHRTNIHNLMLAGLNWSSTP 224

[Close]

BLAST of Cucsat.G7711.T9 vs. NCBI nr
Match: KAE8650609.1 (hypothetical protein Csa_011186 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.50e-09
Identity = 59/178 (33.15%), Postives = 67/178 (37.64%), Query Frame = 0


Query: 5   LNWSFHPLHHTIILIRTLVALKWSSHHLLRTNIHNPM--LAGLKWSFHPLLHTII----- 64
           L WSFHPL HTIILI  LVALKW    +  ++  +P   + GL WSFHPL H  +     
Sbjct: 97  LKWSFHPLLHTIILILMLVALKWF---IPTSSAQHPQSDVGGLNWSFHPLPHHHLNSDVG 156

Query: 65  ------------------------------------------------------------ 101
                                                                       
Sbjct: 157 GPQMVIPPPPPHKQPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKHPQSDVG 216

[Close]

BLAST of Cucsat.G7711.T9 vs. ExPASy TrEMBL
Match: A0A5A7UL00 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002090 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 3.50e-31
Identity = 67/108 (62.04%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 32  LLRTNIHNPMLAGLKWSFHPLLHTIILTVTLVALKWSSHHPRRTNIHNLMLAGLKWSSHP 91
           LLRTN HN MLAGLKWS+H L H IIL + LVALKW SHH    N  N  LAGLKW    
Sbjct: 66  LLRTNFHNLMLAGLKWSYHYLYHIIILILMLVALKWLSHHLHHINFQNPTLAGLKW---- 125

Query: 92  LLHTIILILTLVALKWSFHPLHHTIILIPMLTALKWLFPLLHHITFAF 139
                           SFHPLHHT ILIPML  LKWLFPLLHHITFAF
Sbjct: 126 ----------------SFHPLHHTNILIPMLATLKWLFPLLHHITFAF 153

The following BLAST results are available for this feature:

BLAST of Cucsat.G7711.T9 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G7711.T9 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650613.1	5.97e-40	89.16	hypothetical protein Csa_010726 [Cucumis sativus]	[more]
KAA0055820.1	7.22e-31	62.04	zyxin-like [Cucumis melo var. makuwa] >TYK10071.1 zyxin-like [Cucumis melo var. ...	[more]
KAE8653140.1	1.46e-13	67.21	hypothetical protein Csa_019646, partial [Cucumis sativus]	[more]
KAE8650608.1	3.22e-11	82.93	hypothetical protein Csa_010543 [Cucumis sativus]	[more]
KAE8650609.1	3.50e-09	33.15	hypothetical protein Csa_011186 [Cucumis sativus]	[more]

BLAST of Cucsat.G7711.T9 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL00	3.50e-31	62.04	Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002090 PE=...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G7711	Cucsat.G7711	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7711.T9.E1	Cucsat.G7711.T9.E1	exon
Cucsat.G7711.T9.E2	Cucsat.G7711.T9.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7711.T9.C1	Cucsat.G7711.T9.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7711.T9	Cucsat.G7711.T9-protein	polypeptide