Cp4.1LG07g07530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g07530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 6544923 .. 6545391 (-)
RNA-Seq ExpressionCp4.1LG07g07530
SyntenyCp4.1LG07g07530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGAGAAAATTTGTTGCAAAAAAACATATAATCAGACAATCTTCTTCTAATCGAAACACTATCTGGTTTATATTCTCAAGCGACCGATGTTATTCGAAGGAACATATCGGTTTCATCTCACGAGTCTCCACCGTCCGGTGCGCTCAGAACATGTTCTATTCGAGTTTAGAATGAAGCGGGAAAAGGTAATTATATGAACGTACCCTTATACTCAAATGTGTGTGCTATTTGCAGATTACTTATCATCACTGAATTTGAAAATTTGATTGAAGGTGATAGTATTGGCCATTGCCTTGTGGTGGACACAATTGACACCATTTCTATGTGAAGTACTGATGCATTTGTTCTAGATGCGCGTCGTCCTCGACCTCGTACGACCAAGAGGCCCTTATGGTGCCTGTTACCTATCTTCTTCGAAGGGCTGCAAGGTTATAACCGAACCGACTCGCTCCGACCGACAACTG

mRNA sequence

ATGCGACCGATGTTATTCGAAGGAACATATCGGTTTCATCTCACGAGTCTCCACCGTCCGGTGCGCTCAGAACATGTTCTATTCGAGTTTAGAATGAAGCGGGAAAAGATGCGCGTCGTCCTCGACCTCGTACGACCAAGAGGCCCTTATGGTGCCTGTTACCTATCTTCTTCGAAGGGCTGCAAGGTTATAACCGAACCGACTCGCTCCGACCGACAACTG

Coding sequence (CDS)

ATGCGACCGATGTTATTCGAAGGAACATATCGGTTTCATCTCACGAGTCTCCACCGTCCGGTGCGCTCAGAACATGTTCTATTCGAGTTTAGAATGAAGCGGGAAAAGATGCGCGTCGTCCTCGACCTCGTACGACCAAGAGGCCCTTATGGTGCCTGTTACCTATCTTCTTCGAAGGGCTGCAAGGTTATAACCGAACCGACTCGCTCCGACCGACAACTG

Protein sequence

MRPMLFEGTYRFHLTSLHRPVRSEHVLFEFRMKREKMRVVLDLVRPRGPYGACYLSSSKGCKVITEPTRSDRQL
Homology
[Close]
BLAST of Cp4.1LG07g07530 vs. NCBI nr
Match: KAG7020927.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 3.44e-08
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 2    RPMLFEGTYRFHLTSLHRPVRSEHVLFEFRMKREKMRVV 40
            RPMLFEGT+RF L  L RPVRSE VLFEFRMK+EK+ V+
Sbjct: 987  RPMLFEGTHRFRLMRLRRPVRSERVLFEFRMKQEKVIVL 1025

[Close]
BLAST of Cp4.1LG07g07530 vs. NCBI nr
Match: KAG6586103.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 3.45e-08
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 2    RPMLFEGTYRFHLTSLHRPVRSEHVLFEFRMKREKMRVV 40
            RPMLFEGT+RF L  L RPVRSE VLFEFRMK+EK+ V+
Sbjct: 1152 RPMLFEGTHRFRLMRLRRPVRSERVLFEFRMKQEKVIVL 1190

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g07530 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g07530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020927.13.44e-0874.36Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6586103.13.45e-0874.36Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
BLAST of Cp4.1LG07g07530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g07530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g07530.1Cp4.1LG07g07530.1mRNA