CsGy5G024000 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G024000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 28733512 .. 28734902 (+)
RNA-Seq Expression	CsGy5G024000
Synteny	CsGy5G024000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTGTTCGAATCGCAAAGCCCATAGCCAGAGAGTGGGTCGGCATCTAACCAGGGTTAGTTATTTTAACCACGCTTCTCTCTCTCACTCTAGTTAAAGAAAGAACGTTCCCAGAAGCCGAATTTCCCAAGAGGCAATCAAACATAAACTCAATTAACACAGCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCACGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGGTGAATCCGATTCCTTTTTTTTTTGCTGGGATCTTGAAAGATCTATTAAATTCCGGTGAGTTTTTCTTTTCTGATTTCGTAATTCTTACCGTGTGATGGTTATGTGAGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTAACGAGCATGTGTTCAATGAATGATTCTTTTTCTTTACTTGTTTCTCATTGTTGAATTTCATTTCTCTGATCAGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGGTTAGAGAAGAGATCCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCTTTCTCTATCTCTGGAAGAGTCTATTTTTGAAAATTATTTGCTCCGGAGCCTTTGAAGTTTTTACTTAAATAGCGAACACTCTTCGCCTTTTTCTCTTTTTGTTAAAGTCTGGACGGCGTGTTAGCTAATCGAAGAATGGGGAGTTCATTCTACCGGAATTCTGCAAATATAGATATTATGGTCTTTTGATAAATTTTGGTTTCTTATGGGAAAGGACCGTAAATAGTGCATCAGTTTGTGTTATTGGTGTATGAATTCTTTTTTTTTTTTTGTCAAATCACTTCCCAGCTCGTGGCTTGGGGGTTCTTATTGTCGAGTCTAGATAAATTCACCTTTTTTTTTTTTTTTTTTGGTAGTGATCCATTGGAAGTTAATTCTGTATCAATATTCTTGCTCTTGTGGTCAAGTGTTGATTTTTATGTCCTTGTGTTATTTCCGCAGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAG

mRNA sequence

ATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTGTTCGAATCGCAAAGCCCATAGCCAGAGAGTGGGTCGGCATCTAACCAGGATAGCGACGAGTTTTGGTGGTGAATCCGATTCCTTTTTTTTTTGCTGGGATCTTGAAAGATCTATTAAATTCCGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAG

Coding sequence (CDS)

ATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTGTTCGAATCGCAAAGCCCATAGCCAGAGAGTGGGTCGGCATCTAACCAGGATAGCGACGAGTTTTGGTGGTGAATCCGATTCCTTTTTTTTTTGCTGGGATCTTGAAAGATCTATTAAATTCCGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAG

Protein sequence

MLSPLPRHSRISYLHLTHLFFILRFLFPYISLHPTALPSLPECSNRKAHSQRVGRHLTRIATSFGGESDSFFFCWDLERSIKFRLPLQNVVLSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGEMDL*

Homology

[Close]

BLAST of CsGy5G024000 vs. NCBI nr
Match: KAE8648774.1 (hypothetical protein Csa_008400 [Cucumis sativus])

HSP 1 Score: 176 bits (446), Expect = 6.47e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MLSPLPRHSRISYLHLTHLFFILRFLFPYISLHPTALPSLPECSNRKAHSQRVGRHLTRI 60
          MLSPLPRHSRISYLHLTHLFFILRFLFPYISLHPTALPSLPECSNRKAHSQRVGRHLTRI
Sbjct: 1  MLSPLPRHSRISYLHLTHLFFILRFLFPYISLHPTALPSLPECSNRKAHSQRVGRHLTRI 60

Query: 61 ATSFGGESDSFFFCWDLERSIKFR 84
          ATSFGGESDSFFFCWDLERSIKFR
Sbjct: 61 ATSFGGESDSFFFCWDLERSIKFR 84

[Close]

BLAST of CsGy5G024000 vs. ExPASy TrEMBL
Match: A0A0A0KQY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606900 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 2.88e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 85  LPLQNVVLSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVII 144
           LPLQNVVLSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVII
Sbjct: 114 LPLQNVVLSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVII 173

Query: 145 CCCESGEMDL 154
           CCCESGEMDL
Sbjct: 174 CCCESGEMDL 183

The following BLAST results are available for this feature:

BLAST of CsGy5G024000 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G024000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648774.1	6.47e-54	100.00	hypothetical protein Csa_008400 [Cucumis sativus]	[more]

BLAST of CsGy5G024000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQY6	2.88e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606900 PE=4 SV=1	[more]

BLAST of CsGy5G024000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G024000.2	CsGy5G024000.2	mRNA