CsGy3G026670 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G026670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 27471707 .. 27471953 (+)
RNA-Seq Expression	CsGy3G026670
Synteny	CsGy3G026670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACTACTTTGAATTACCTATTCCACACGGTCCCCGGACAAAGATCTTTATCCCATCAGAAGATAAGAAGCAAGGTTTTGGTTCTCTTTTTACTCTCTTATCTCAAACTATATGAAGGCACCTCCTCCTCCCACCACCAAATTACACTCCTACAAGGCTGCACTACAAATCACACCCAGTGAAGTCAGCCTTCCAGTAAATCCGGTCAAGCCACCTAATCTTGTTGATGCACCTACACCCTAA

mRNA sequence

ATGGGTACTACTTTGAATTACCTATTCCACACGGTCCCCGGACAAAGATCTTTATCCCATCAGAAGATAAGAAGCAAGGCACCTCCTCCTCCCACCACCAAATTACACTCCTACAAGGCTGCACTACAAATCACACCCAGTGAAGTCAGCCTTCCAGTAAATCCGGTCAAGCCACCTAATCTTGTTGATGCACCTACACCCTAA

Coding sequence (CDS)

ATGGGTACTACTTTGAATTACCTATTCCACACGGTCCCCGGACAAAGATCTTTATCCCATCAGAAGATAAGAAGCAAGGCACCTCCTCCTCCCACCACCAAATTACACTCCTACAAGGCTGCACTACAAATCACACCCAGTGAAGTCAGCCTTCCAGTAAATCCGGTCAAGCCACCTAATCTTGTTGATGCACCTACACCCTAA

Protein sequence

MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPNLVDAPTP*

Homology

[Close]

BLAST of CsGy3G026670 vs. NCBI nr
Match: KGN58482.1 (hypothetical protein Csa_001469 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 4.32e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPN 60
          MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPN
Sbjct: 1  MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPN 60

Query: 61 LVDAPTP 67
          LVDAPTP
Sbjct: 61 LVDAPTP 67

[Close]

BLAST of CsGy3G026670 vs. ExPASy TrEMBL
Match: A0A0A0LCS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646690 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.09e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPN 60
          MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPN
Sbjct: 1  MGTTLNYLFHTVPGQRSLSHQKIRSKAPPPPTTKLHSYKAALQITPSEVSLPVNPVKPPN 60

Query: 61 LVDAPTP 67
          LVDAPTP
Sbjct: 61 LVDAPTP 67

The following BLAST results are available for this feature:

BLAST of CsGy3G026670 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G026670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58482.1	4.32e-40	100.00	hypothetical protein Csa_001469 [Cucumis sativus]	[more]

BLAST of CsGy3G026670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCS2	2.09e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646690 PE=4 SV=1	[more]

BLAST of CsGy3G026670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G026670.1	CsGy3G026670.1	mRNA