CsGy3G017070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G017070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-directed RNA polymerase III subunit RPC3
Location	Gy14Chr3: 13089705 .. 13096296 (+)
RNA-Seq Expression	CsGy3G017070
Synteny	CsGy3G017070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGACTCAGTATGGCATCAAATATGCCGTCCACATTATGACTGCACACTTCGGAAATCTCGTCGCTGTATGCTTTTCTTTTTTAATCCTCGCTTCAGAAATTATCAGCTTCTTCTTCATCTTCTACGTATTATCGTTGTTGATCAGTATTGTTTGTGCATTGACAGAAAGTGTGTGAAACCCTGCTTCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCCCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGATGTGACAGAAGGTAGAGAGTTCTGGGTCTTTGTATTTTTTGGTAAAGTTAATTGATGCTTCGTTAATTATTGGCAAAAGAACACTCACGAGCTAACAGAGCAACCCTTTTATCTTAAATTGTATCTGGACTTCAGAATTGAGTTCCACATAACTGGGATTATAAACAGTGTTTTGGTAGGATTTATTTATGCTCAGTGACACTGTCTAAAGTCCATTCGTCTTTTAAACTTATTAGCTTTGATAGGAAGCTATTATATGGAATCACATTGGACATTATTGGATAAATGGGATTTTGAAGAGGTAGTTGTATTCTCAGAAAGCACACCACTTGTGTACAAATTGTGCTTCTTATCACTGTTTCTGTAATTGTTTGTATAGGTGAGTTTGGAGACGCACCCAAGGATGATACACTATACTTGGCATTGTTTAGTAATATACTTCATCGTATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATGTTAGTTCATTTACTCACAATGAAAAAATATGTTTTATTGAGAAATTTCCAGATTCAAGTTAAGTTATTTTCTCAACTTACGTTTCTGATTTTGTAGTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGCAAGTTTGTTACCTGGTATTTTTATTTGCATGTTATTGTTCTCTTCTATCTGCTTTATCGCTTACTATGATATGTTCTCTCAGTGTCTACAAATCAGATATTGATTTCAATTTTTAAATGGAACGTTATGATTCATTATAGGGAGATGGACAGATCCCATAGATAATTTTCTTTACAATTCTTATTAGTCCTAATATTAGATTTTATTGTTTGAGCAAGAAGCTCATATCTTTGAACAAGTGGAATTACTATGGAGGGGGAAGAATGTCAATGCTGTTCTCTAACTACTCTGTTTCTCTGATTCTAGCCAATTGCCAATGTTTATCCCCCCTTGACTTTGTTGGGGTTTCATTTATCAATTATATTTCTTTTTGTTTAAACTTGTTTTTCTTTCATTTTCATCTTGTTTAGAAAAGTAAAATTGGTTTTTATTTCCTAAAGGCTAAAACCATGATACATTTGGCCGAACTTACTGAACAAGCACATTAGAGAAGAAATTAACATAATCCAGAAGGTGGTTCTTGCACTGAGAAAGTATTTGTAACACTTATTTGCTTTCAATACATCAACTATTACAAATGTTTCGTTACTGAAGTATTGTTTCTGCATTTTAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAACTGTCGGTCTGAAACTTTTTGTGCAATATGGTGTCAACTATTACCTTTGTGTTATTAAGTGGATTTGTTACAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGGTATGCATGAGAATGTTATATGATACCAAATTACTTGGTCAAAACATGTTTAGTCTTGCTCATAATTTTTCTGTAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGTTAGTACTATTTTATATTTTATCTTAGGAATTTTTGTACCTTTTAGTTAGGTGATATGACATTCACTGTTACAAGGAATGTCACGCCTCTTTAGTTTCATTCACATTAAGGATGGTTGATGGGAAAGAAAAACGGACATGACAAAAATGAGCAATTTACTCACTTGAAGCCTATTGATGGAAGACTTCAGTGTGCAACTTTTTCAGAGACATTGGTATTATTATTATTATTATTATTTTATATAATATGTAGAACAAATATAGAAGCAGAACCTAAAACCCTTGTGGGTGACCTATTGGACCCTGAGCCTGTGAGGAGGAATTGAACAAAAGACCCCAATCTAAAAACAATGGGGAGAGAATGAATATTACTATATGAATTGTGTAAACTGTAGAACTCGATTTATTGGAGGTTGAATACTGACTTTGGACACAAGATGGGCTTGCTAATGTTATACAAGAACGTGAAATAACTAGCTTCTTTGAGTGTTCTAATTGGTCACCCATGTTGCCCTTCACATTTTTGTTTATTTTCCTTCTTTTGATCGATTCCTTTTTCATTGTGATAATTTTGGAAATGTACTTGTTATCTACATTCCAGTAGTAATTGGATCAATATCTTTGTATGGCTCTAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTAATGCTTCTGTAGATTCCTCATACAGTTTAGTTATGCAAGTGTTTGATCTTGATGCACATTCATTGTATTACACAAATCATTTATTTTTTCCTTCCTTTCCTGTTGGGTCTGGAATTTAAGCAATTGTTTGGAGATTCTTTTGAAGACCACTTGCTACTTTTAAAAATAAAATATTAGTGAAAACATGCTGGCTTGATTGCTTTATACAAGTATTTATATATATATTTATAAATATAGACGAATTTATGCAAGTTGTTTTCTAATGTTTTCTTTTGGTTTGTTTTTAAAGGTGAGTTGGTTGATTCTTTGAATAATTGAAATTGTTTTTTTTTCTAAAACGATTGGATGCATGGTTAATACATTTTGTAAAGACTAAATCATGAAAGGTAGGGCTCAAGAAATATAATAGAACGACTTGTGATTTGGAAACCATTAGAAATGTTTTTCCTTTATCACCGATTCACCTGTGTGCCCTTTCTGTGTCCTGTTTTAAAGTTTCAATGGTTTGCAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATGGATGATTATAAAATCAGTATGTTCACCACTGTCGATTTCTCAATGTGTTTACATTTTACACTTCTGAGTGAGTTTAAGCTTTTCTAAAAACATGTGATTGCACAGATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTCTCTCCCTCACTCTCATACATCTAGTGAAAAGTACACATATGTTCTCTTGAGTCTTGAGAAATGATTCTATTTCTTCTTGCAATCAGTAGATTGAAATCTCTGATGTGAGTTAGTACTTAATTTCTTTAAATAACAACTTTGATTGAGTAAAAATGAAAGAATACATAGAAATCACTCATCGGAAAAACCAAGCCCACTAAAATGGGAACCATTTATAAGTAGGGCTCTGGCTTTCAAAATAGATCCTATAGAATAATTCACAAAAGGTCATTGAGGGAAACATTTCTTCTCCGATCCCTTGCACTTTCAGAGATTGATTAATCTATAGCCAACAAACTTGGATTCTCTTCGTTACAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAAGAGTTTTCTGCCGGTTACACTCAAGATTGTCCGATGAGTGTAATGTATACATTTTATCTTGAAATATATATAATTTACATGTGAATTCAACTAAAAAACCAATAATATAATGGGTTACCCTTCTGCCCTTACAAATCGTTGTCAAGATTACTAGGAATTGCTCTTTTTTTACTCAGTATTTTGAAATTGGCCATTTGTGATTTTGTTTTTTTGGTTAATTATTTGACAGATATTCCATTTCTTTTCCTGTAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGGTAAACATCTTTGCTCTGTAAGCACGTGTTTTTTGCATCCAAATTCACATATTTACAAATCATGAAGTAAAAGATAATACCATACCCTTTTTTCCAATGAGAAAGCACGGAACTGTCATTGATAGAATAAAAAAAACATAAAGGAGTGAGTGACCATGGAGGAAGCAAAAATATCATACTAGATTACTTGTTCAATTCTTCATGGCATCAGACTTATTGGTTTCCAGTACATTAATTAAATACTCAAGATAATTGTGTGTAATCAGACATGGATGTAACCAGAAAAATAATTACAGGAATAGTTAATATTTAATCAGGTAACATATGTTTTATTATTAGGATTGGTTGTAGTTTTATTAGCAGTTCTGCACATCTTTGATTTAAATGTCCTTATATCTTGTCTTTGTTTCTTCATTTCTTCCTTTCTGTGTATCGTCTTCTACCTGCACCGGCTACCCATGTTCTTTTGCAGCTTGAGTGAGTTACCTTGTTAGTCGTTTTTGGGGCATCATAGTGAAACAATTTATCTTTGTTGCAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGGTTAATGTGAAAATTTACTTATTTCGTATGTGCAATTGGTGGTATTTGTTTCCAGGGTTGGGATTAGATGGGTTAGACATCCTAAGTCCAATCCCTTGTCTGGGACAAGCGTATAGGAGTCCAGCTTCCTACCCTCTTTCGAATGAGTTTGAATAGTTAACTTTATTCAAACTCATGAGTTACCTTTTTTTCTTTTCTAATTTAATCTAGAAGGTTTATTGGTCAATTTCCAAAGACAACCTTGGCAAACTAACCTCTGGCTACCAACTAATGTTGAAAAACATTAACAAAAGCACTTTGAATAAAAATATAAATATCACAAATATCACATATCAACCTAACTGCCTGCCGGTCTTAACATTGCCAGATTTGAGATTTCAAGGCTAGGCACCAAACACCCCCTTGGTTAAGACTTAACAGTGATATTGACCACAAGTATGTTTTTCACTAATCTGGTTACTTTAGCCTTTGTCATCTTATTCGTGTGGTGTCCCATAGCAGAACATTTTAGGATATGCCAAATGTGGATTTTGCCAACTTTTATCAGTAATGGCTAGAAAACCACCTTTGTGGTTGCATGACAGGATACTTGTATGTGAACTGAAGTTGAAACCTGTTTTGGGGGTGTAATCGGTTCAGTTACGCTTGGTTTTAACCTCAAACCGAACTGTCATAACTTATGAAAATAAGAAAACTGCACGAAACTGCTGAAGGGATATTAACTGAAGTGCACATAGCCAATATAAACTGGTTTACTCGGCTCTGTTTCCTGTTAACATTATTAATGTTCGGTTTTGGTCTCGACCATGGAGCCGAATTCATTATTATTGGATCGAGGACTAAAGCGTGTCAGGAAATTTGTGTTAACTGTGTGTCAACATTCAAAATAAAATATTTGTGTTCGCCTAGGCTCAAACACGTGCATTAGACTATTCAGTCCAATGAAACTGCCACTGGAGTGGAGCCATCCGCTGTCTTCATATAAATATAGTTTTGCGGTCGGCTTGGTTATATTATAACTGCTGAATGCTAAACCCATCTCCAAACCTGTTTTGCCCTCGCACCCCTACCGTTTTATATAATCACCCCTTTAAGCGTATTCTCTATGTCGTTTGTCTTAGTTTGATTAATTTTCGCTTTTGCTCTGTTCCCTTACAAAACTAGTACTTTCATTATCATTTACTTTAATAATAGTTTTGGAGTGAAGATCTGATTCTGGTGACTATTCCTTTCATGCTTTCTCAGTGGACAAGTTCAAATACTGACTTCTTGCTTTTGCCATCTATTTTCCAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGACGCTCTAATGCTTTTCCATGACTTCTGA

mRNA sequence

ATGGTGATGACTCAGTATGGCATCAAATATGCCGTCCACATTATGACTGCACACTTCGGAAATCTCGTCGCTAAAGTGTGTGAAACCCTGCTTCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCCCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGATGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGATGATACACTATACTTGGCATTGTTTAGTAATATACTTCATCGTATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATGGATGATTATAAAATCAATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGACGCTCTAATGCTTTTCCATGACTTCTGA

Coding sequence (CDS)

ATGGTGATGACTCAGTATGGCATCAAATATGCCGTCCACATTATGACTGCACACTTCGGAAATCTCGTCGCTAAAGTGTGTGAAACCCTGCTTCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCCCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGATGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGATGATACACTATACTTGGCATTGTTTAGTAATATACTTCATCGTATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATGGATGATTATAAAATCAATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGACGCTCTAATGCTTTTCCATGACTTCTGA

Protein sequence

MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF*

Homology

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BLAST of CsGy3G017070 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-25
Identity = 128/497 (25.75%), Postives = 223/497 (44.87%), Query Frame = 0


Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +L+QH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60

Query: 63  NCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  S +L  +R+ +++   ++ L  D   + ++E 
Sbjct: 61  NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+L+M  +V    +R   +   G       V ++  +L + HFV+RCP+   T + 
Sbjct: 121 LLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDT--NPEAEKSEHHSQI 242
               PPP    A    I+E    L  +L    +  +  R S  D    P+A++ ++ +  
Sbjct: 181 DPGPPPP----APTLVINEKDMYLVPKLSLIGKG-KRRRSSDEDAAGEPKAKRPKYTT-- 240

Query: 243 SGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFD---DGVVNVL 302
                  D+ E   D G     I W+AN D F +  R +A +  V ++ D     +V  +
Sbjct: 241 -------DNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 300

Query: 303 SAILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAAL 362
             + E T SS        T PLS + I+        + K  + + +TL  D     +   
Sbjct: 301 LRMSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKS 360

Query: 363 GCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSF 422
           G  G   Y INL + +    T  +ES+V +R+G    R+FR + +    +E +++ D + 
Sbjct: 361 GDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVEDFAM 420

Query: 423 VDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASL 480
           +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  
Sbjct: 421 IPAKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSIA 461

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BLAST of CsGy3G017070 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-25
Identity = 127/494 (25.71%), Postives = 217/494 (43.93%), Query Frame = 0


Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +LIQH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60

Query: 63  NCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  + +L  +R+ +++  A  K       + ++E 
Sbjct: 61  NLV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA--KTLYSDTGELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  +V    +R   +   G       V ++  +L++ HFV+RCP    T + 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPATENS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISG 242
               PPP    A    +SE    L  +L    +  +  R S  D   E +          
Sbjct: 181 DTGPPPP----APTLVVSEKDMYLVPKLSLIGKG-KRRRSSDEDATGEPKAKR------- 240

Query: 243 QKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 302
            K+  D+ E   D G     I W+AN D F +  R +A +  V ++ D     ++  +L 
Sbjct: 241 PKQTTDNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 300

Query: 303 ATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALGCP 362
             R SE    +    T PLS + I+        + K  + + +TL  D     +   G  
Sbjct: 301 --RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS 360

Query: 363 GMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDK 422
           G   Y INL + +    T  +ES+V +R+G    R+FR + +   L E +++ D + +  
Sbjct: 361 GGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 420

Query: 423 NEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
            EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL 
Sbjct: 421 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 461

[Close]

BLAST of CsGy3G017070 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-23
Identity = 122/494 (24.70%), Postives = 213/494 (43.12%), Query Frame = 0


Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  S +L  +R+ +++       G     + ++E 
Sbjct: 61  NLV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGD--TGELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  +V    +R   +   G       V ++  +L + HFV+RCP    T S 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISG 242
               PPP    A    I+E    L  +L    +         G     +++       + 
Sbjct: 181 DPGPPPP----APNLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDAAGEPKAK 240

Query: 243 QKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 302
           + R  D+ E   D G     I W+ N D F +  R +A +  V ++ D     ++  +L 
Sbjct: 241 KPRCTDNEEPTPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 300

Query: 303 ATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALGCP 362
             R SE    +    T PLS + I+        + K  + + +TL  D     +   G  
Sbjct: 301 --RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGDS 360

Query: 363 GMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDK 422
           G   Y INL + +    T  +ES++ +R+G    R+FR + +   L E +++ D + +  
Sbjct: 361 GGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 420

Query: 423 NEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
            EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL 
Sbjct: 421 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLI 460

[Close]

BLAST of CsGy3G017070 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-23
Identity = 118/492 (23.98%), Postives = 212/492 (43.09%), Query Frame = 0


Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  S +L  +R+ +++       G     + ++E 
Sbjct: 61  NLVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGD--TGELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  +V    +R   +   G       V ++  +L + HFV+RCP    T S 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISG 242
               PPP    A    I+E    L  +L    +         G     +++       + 
Sbjct: 181 DRGPPPP----APTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDATGEPKAK 240

Query: 243 QKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 302
           + R  D+ E + D G     I W+ N D F +  R +A +  V ++ D     ++  +L 
Sbjct: 241 KPRYTDNKEPSPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLR 300

Query: 303 ATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALGCPGM 362
            +  +        T PLS + I+        + K  + + +TL  D     +   G  G 
Sbjct: 301 MSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGG 360

Query: 363 DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNE 422
             + INL + +    T  +ES++ +R+G    R+FR + +   L E +++ D + +   E
Sbjct: 361 GMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPAKE 420

Query: 423 APKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           A  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R
Sbjct: 421 AKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIER 460

[Close]

BLAST of CsGy3G017070 vs. ExPASy Swiss-Prot
Match: Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-17
Identity = 136/673 (20.21%), Postives = 255/673 (37.89%), Query Frame = 0


Query: 6   YGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LTPSQVNNSLLILIQ 65
           Y  K A+ I+   FG+ V KV E L+++G  + +++ +       LT  ++   LL+LIQ
Sbjct: 2   YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61

Query: 66  HNCV---QAFTDVTEGEF-----GDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQD 125
           HN V   +    +T+ E      G+    D++Y A+  N +HR+RF KF+       G +
Sbjct: 62  HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121

Query: 126 KNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVV----HDSLFKLLNAHFVERC 185
                +LE L+ +GRL M+ L+++A    R       D +     D+  KL+   F+ R 
Sbjct: 122 --AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRA 181

Query: 186 PAPEPTLSPKVEEPPPRKR-------------GAKAAKISEV------------PETLEQ 245
           P P P    +      ++              GA   K S+             P +   
Sbjct: 182 PRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVGFSSNGPLSSVD 241

Query: 246 RLIEAARPVEVLRFSMGDTN-PEAEKSEHHSQIS----------------GQKRKHDDLE 305
                A  +E+L      T  P   K     + S                G+KRK  D+ 
Sbjct: 242 NSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATASLGRKRKSRDIY 301

Query: 306 IAQDSGDAD--------------------------------------------------- 365
              D  + D                                                   
Sbjct: 302 DEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKKSKLDQSSSTTT 361

Query: 366 ------------------GPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 425
                               +LW  NY++FI   + KAC + V  + +     + +A+++
Sbjct: 362 TSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVK 421

Query: 426 ATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVE----ASLAALGCPGM---- 485
             + S +  +  +T  +  +NI EE    ++  S  +D+++     S+     P M    
Sbjct: 422 LCKRSIRSNQDSLTSCVYGENILEE-YNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKM 481

Query: 486 ------------DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETE 522
                         Y++N+  II   +   VESI+ +++G +  R+F+ L     L+E +
Sbjct: 482 VSKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLL-LIKNLLEPK 541

[Close]

BLAST of CsGy3G017070 vs. NCBI nr
Match: XP_011651154.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >XP_031739155.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >KGN57381.1 hypothetical protein Csa_009994 [Cucumis sativus])

HSP 1 Score: 1031 bits (2665), Expect = 0.0
Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240
           EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK
Sbjct: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240

Query: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300
           RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT
Sbjct: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300

Query: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI 360
           RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI
Sbjct: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI 360

Query: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420
           IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK
Sbjct: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420

Query: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480
           DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS
Sbjct: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480

Query: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]

BLAST of CsGy3G017070 vs. NCBI nr
Match: XP_008439232.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo] >XP_008439233.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo])

HSP 1 Score: 999 bits (2584), Expect = 0.0
Identity = 506/522 (96.93%), Postives = 513/522 (98.28%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           SLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of CsGy3G017070 vs. NCBI nr
Match: XP_038878061.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_038878062.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida])

HSP 1 Score: 926 bits (2393), Expect = 0.0
Identity = 466/522 (89.27%), Postives = 498/522 (95.40%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLLIRFTELT SQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELTSSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSN+LHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNVLHRMRFSKFLAIASEKLRKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERA+SS  AGN PI D+VHDSLFKLLNAHFVERCPAPEP+LSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAQSSKHAGNRPIPDIVHDSLFKLLNAHFVERCPAPEPSLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPP+KRGAKAAKISEVPETLEQR++E+ARP+EVLRFSMGDTN EAEKSEH+SQISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRVVESARPMEVLRFSMGDTNTEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHDDLE+ QDSGDAD  ILWRAN+DEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Sbjct: 241 KRKHDDLEMVQDSGDADSVILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL++LGCPGMDDY+INLR+
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSSLGCPGMDDYQINLRK 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+EENKELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           SLP DN N+PL+K+    + VR LL+SSL+KLDDALMLFHDF
Sbjct: 481 SLPPDNRNEPLMKRFDRLKKVRGLLQSSLLKLDDALMLFHDF 522

[Close]

BLAST of CsGy3G017070 vs. NCBI nr
Match: TYK22958.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 915 bits (2366), Expect = 0.0
Identity = 463/479 (96.66%), Postives = 471/479 (98.33%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 479

[Close]

BLAST of CsGy3G017070 vs. NCBI nr
Match: KAA0033658.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 915 bits (2366), Expect = 0.0
Identity = 463/479 (96.66%), Postives = 471/479 (98.33%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 29  MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 88

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 89  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 148

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 149 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 208

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 209 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 268

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 269 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 328

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR
Sbjct: 329 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 388

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 389 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 448

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 449 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 507

[Close]

BLAST of CsGy3G017070 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 1031 bits (2665), Expect = 0.0
Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240
           EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK
Sbjct: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240

Query: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300
           RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT
Sbjct: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300

Query: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI 360
           RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI
Sbjct: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI 360

Query: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420
           IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK
Sbjct: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420

Query: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480
           DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS
Sbjct: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480

Query: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]

BLAST of CsGy3G017070 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 999 bits (2584), Expect = 0.0
Identity = 506/522 (96.93%), Postives = 513/522 (98.28%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           SLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of CsGy3G017070 vs. ExPASy TrEMBL
Match: A0A5A7SSU3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001250 PE=3 SV=1)

HSP 1 Score: 915 bits (2366), Expect = 0.0
Identity = 463/479 (96.66%), Postives = 471/479 (98.33%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 29  MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 88

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 89  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 148

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 149 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 208

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 209 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 268

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 269 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 328

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR
Sbjct: 329 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 388

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 389 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 448

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 449 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 507

[Close]

BLAST of CsGy3G017070 vs. ExPASy TrEMBL
Match: A0A5D3DHJ0 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00630 PE=3 SV=1)

HSP 1 Score: 915 bits (2366), Expect = 0.0
Identity = 463/479 (96.66%), Postives = 471/479 (98.33%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDAPKDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 479

[Close]

BLAST of CsGy3G017070 vs. ExPASy TrEMBL
Match: A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)

HSP 1 Score: 881 bits (2276), Expect = 0.0
Identity = 442/522 (84.67%), Postives = 486/522 (93.10%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ++ERA+SS  AGN PI DVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAK+SEVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRK  DL++ Q+SGDADG ILWRAN+DEF+RCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           +LP D    PL K+ +   NVR LL SSL+KLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CsGy3G017070 vs. TAIR 10
Match: AT3G49000.1 (RNA polymerase III subunit RPC82 family protein )

HSP 1 Score: 451.8 bits (1161), Expect = 7.3e-127
Identity = 249/535 (46.54%), Postives = 361/535 (67.48%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTE--LTPSQVNNSLLI 60
           M M+++GI YA+HI+T  FG++V+KVCE LLRKGPL+ R + R  E  +  ++V + L +
Sbjct: 1   MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60

Query: 61  LIQHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQE 120
           LIQHNCVQAF+   E   G   K    Y+ LF+NILHR+R++KF  I +++L  D  C  
Sbjct: 61  LIQHNCVQAFS--IEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120

Query: 121 LLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 180
           +L+GLL NGRL++ Q +ER   S   GN   S+ + DSL KL+ A FVER P+PEP L  
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLGN 180

Query: 181 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSM-GDTNPEAEKSEHHSQIS 240
           K E+ P ++RGAKAAKI + PETLE++++EAA PV+ +RF +  + +  +  ++ +S I+
Sbjct: 181 K-EKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSNIT 240

Query: 241 GQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL 300
             KRK  D+    D+ D+   ++WR N++EFI  LRHKAC+E V+ + D+G   VL A+L
Sbjct: 241 EGKRKQRDV----DTSDSSSGVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAML 300

Query: 301 EATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGM------- 360
           E  RS EK VKT+ + P+S+ +IYEEV+K E GR+M  +RVEA L  L            
Sbjct: 301 EVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVN 360

Query: 361 ---DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
              D Y ++ + II  AQ DE+E++V++RYG++A+RMFR+LS+ G  VET+KI+D++  +
Sbjct: 361 EVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTE 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVP-RHSLCLLWRVDRYNLWEHVLDEMYHASLNLQL 480
           K + P+ L ++WKD YL+M+K+A+T P  ++  LLW+V++  +   +LDEMYHASLNL L
Sbjct: 421 KKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSL 480

Query: 481 RLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 522
           RLAHE+E  KELL LP D    PL +++   +  R LL S++ KLDDA+MLFHDF
Sbjct: 481 RLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523

The following BLAST results are available for this feature:

BLAST of CsGy3G017070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BUI4	3.5e-25	25.75	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
Q2TBL4	7.9e-25	25.71	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
Q5XIL3	1.5e-23	24.70	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
Q9D483	1.9e-23	23.98	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
Q55FJ5	3.5e-17	20.21	DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of CsGy3G017070 vs. NCBI nr


Match Name	Identity	Description
XP_011651154.1	100.00	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >XP_03...	[more]
XP_008439232.1	96.93	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo...	[more]
XP_038878061.1	89.27	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_...	[more]
TYK22958.1	96.66	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuw...	[more]
KAA0033658.1	96.66	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuw...	[more]

BLAST of CsGy3G017070 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A0A0LBF3	100.00	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A1S3AYY3	96.93	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7SSU3	96.66	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5D3DHJ0	96.66	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1G256	84.67	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CsGy3G017070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49000.1	7.3e-127	46.54	RNA polymerase III subunit RPC82 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 91..176 e-value: 1.9E-19 score: 71.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 3..75 e-value: 3.4E-23 score: 83.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 264..360 e-value: 9.4E-8 score: 34.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 361..445 e-value: 2.9E-20 score: 74.0
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 156..336 e-value: 6.9E-17 score: 62.1
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 10..69 e-value: 7.0E-22 score: 77.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..243
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 3..521

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017070.2	CsGy3G017070.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding