CsGy3G024250 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G024250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DUF1713 domain-containing protein
Location	Gy14Chr3: 24263117 .. 24263509 (+)
RNA-Seq Expression	CsGy3G024250
Synteny	CsGy3G024250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCATGCTTCAAAATCTCATTAGAAAATCGCCACCCACGAGATTAATTGCTGCTTTGGGTGCTCAGACCTCACAAAATCTCTCAACACCCTTCATTCTTCACCAGCCCCTTGATTTTGATAAGAAACCAGATGCACATTGCCATTCTAATATAAACTCTGCTTCTACTTCGAATCCGTCTCATTTTTCCCAGTTTTACCCTAGTTTTCCATTTGGGCTTTGCTTGCCCCAAATCTCCTCTACTGGGTTGCTTCCGTTCGAGCCCGATTGTGTTGAGCAAGACGATTCTCGGAAGTTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGCAAGATGAACAAGCATAAGTATAAGAAGCTAAGGAAGCGGCTCCGAAGACAGACATAG

mRNA sequence

ATGGCGTCCATGCTTCAAAATCTCATTAGAAAATCGCCACCCACGAGATTAATTGCTGCTTTGGGTGCTCAGACCTCACAAAATCTCTCAACACCCTTCATTCTTCACCAGCCCCTTGATTTTGATAAGAAACCAGATGCACATTGCCATTCTAATATAAACTCTGCTTCTACTTCGAATCCGTCTCATTTTTCCCAGTTTTACCCTAGTTTTCCATTTGGGCTTTGCTTGCCCCAAATCTCCTCTACTGGGTTGCTTCCGTTCGAGCCCGATTGTGTTGAGCAAGACGATTCTCGGAAGTTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGCAAGATGAACAAGCATAAGTATAAGAAGCTAAGGAAGCGGCTCCGAAGACAGACATAG

Coding sequence (CDS)

ATGGCGTCCATGCTTCAAAATCTCATTAGAAAATCGCCACCCACGAGATTAATTGCTGCTTTGGGTGCTCAGACCTCACAAAATCTCTCAACACCCTTCATTCTTCACCAGCCCCTTGATTTTGATAAGAAACCAGATGCACATTGCCATTCTAATATAAACTCTGCTTCTACTTCGAATCCGTCTCATTTTTCCCAGTTTTACCCTAGTTTTCCATTTGGGCTTTGCTTGCCCCAAATCTCCTCTACTGGGTTGCTTCCGTTCGAGCCCGATTGTGTTGAGCAAGACGATTCTCGGAAGTTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGCAAGATGAACAAGCATAAGTATAAGAAGCTAAGGAAGCGGCTCCGAAGACAGACATAG

Protein sequence

MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKRLRRQT*

Homology

[Close]

BLAST of CsGy3G024250 vs. NCBI nr
Match: XP_011651574.1 (uncharacterized protein LOC101220058 [Cucumis sativus])

HSP 1 Score: 258 bits (658), Expect = 1.80e-86
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. NCBI nr
Match: KAE8650785.1 (hypothetical protein Csa_017463 [Cucumis sativus])

HSP 1 Score: 258 bits (658), Expect = 1.98e-85
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN
Sbjct: 72  MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 131

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 132 PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 191

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 192 KLRKRLRRQT 201

[Close]

BLAST of CsGy3G024250 vs. NCBI nr
Match: KAA0056277.1 (DUF1713 domain-containing protein [Cucumis melo var. makuwa] >TYK05222.1 DUF1713 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (609), Expect = 5.35e-79
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQ LIRKSPP+RLIAALGAQTSQNLSTPFILHQPLDFDKK DAH HSN+NSASTSN
Sbjct: 1   MASMLQKLIRKSPPSRLIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSASTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS FSQFYPSFPFGLCLPQISSTGLLPFEPD VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSQFYPSFPFGLCLPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. NCBI nr
Match: KAG7017804.1 (hypothetical protein SDJN02_19670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226 bits (577), Expect = 4.06e-74
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEPD VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. NCBI nr
Match: XP_023526336.1 (uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225 bits (573), Expect = 1.65e-73
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEPD VEQD+SRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. ExPASy TrEMBL
Match: A0A0A0LDP0 (DUF1713 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 8.71e-87
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. ExPASy TrEMBL
Match: A0A5A7UNU9 (DUF1713 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00280 PE=4 SV=1)

HSP 1 Score: 239 bits (609), Expect = 2.59e-79
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQ LIRKSPP+RLIAALGAQTSQNLSTPFILHQPLDFDKK DAH HSN+NSASTSN
Sbjct: 1   MASMLQKLIRKSPPSRLIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSASTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS FSQFYPSFPFGLCLPQISSTGLLPFEPD VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSQFYPSFPFGLCLPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. ExPASy TrEMBL
Match: A0A6J1F832 (uncharacterized protein LOC111441723 OS=Cucurbita moschata OX=3662 GN=LOC111441723 PE=4 SV=1)

HSP 1 Score: 225 bits (573), Expect = 8.00e-74
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEP+ VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPEFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. ExPASy TrEMBL
Match: A0A6J1J7I5 (uncharacterized protein LOC111482461 OS=Cucurbita maxima OX=3661 GN=LOC111482461 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 3.65e-70
Identity = 110/130 (84.62%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MASMLQ L+RKS PTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STS+
Sbjct: 1   MASMLQKLVRKSSPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSD 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
            SHF  FYPSFPFG CLPQISS+G+LPFEPD VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  LSHFPLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. ExPASy TrEMBL
Match: A0A6J1EJL0 (uncharacterized protein LOC111435191 OS=Cucurbita moschata OX=3662 GN=LOC111435191 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 7.06e-68
Identity = 107/130 (82.31%), Postives = 115/130 (88.46%), Query Frame = 0


Query: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60
           MAS+LQ LIRKSPPTR IAAL +QTSQNLS P+ILHQPLD D+KPD HC SN+N+ STSN
Sbjct: 1   MASILQKLIRKSPPTRTIAALASQTSQNLSLPYILHQPLDIDRKPDGHCDSNLNAVSTSN 60

Query: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS FS F+PSFPFGLCL QISSTG + FEPD VE DDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSLFFPSFPFGLCLQQISSTGSIRFEPDYVEDDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 130
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of CsGy3G024250 vs. TAIR 10
Match: AT5G63150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1713, mitochondria (InterPro:IPR013177); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 43  KKPDAHCHSN-INSASTSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCV--EQDDSR 102
           +KPD    +N + + S +  +   +FYPSF  GLCL      GL   E   +  E++D++
Sbjct: 46  EKPDPVSFTNPLITLSGNESNQPMRFYPSFSMGLCLNPKMIQGLDLAETASLEEEEEDTK 105

Query: 103 K--LWADSVKKKRKRKMNKHKYKKLRKRLRRQT 131
           +  ++ADSVKKKRK+KMNKHKY+KLRK+L R++
Sbjct: 106 EIVIYADSVKKKRKKKMNKHKYRKLRKQLGRKS 138

The following BLAST results are available for this feature:

BLAST of CsGy3G024250 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G024250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651574.1	1.80e-86	100.00	uncharacterized protein LOC101220058 [Cucumis sativus]	[more]
KAE8650785.1	1.98e-85	100.00	hypothetical protein Csa_017463 [Cucumis sativus]	[more]
KAA0056277.1	5.35e-79	94.62	DUF1713 domain-containing protein [Cucumis melo var. makuwa] >TYK05222.1 DUF1713...	[more]
KAG7017804.1	4.06e-74	87.69	hypothetical protein SDJN02_19670, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023526336.1	1.65e-73	86.92	uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G024250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDP0	8.71e-87	100.00	DUF1713 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=...	[more]
A0A5A7UNU9	2.59e-79	94.62	DUF1713 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1F832	8.00e-74	86.92	uncharacterized protein LOC111441723 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J7I5	3.65e-70	84.62	uncharacterized protein LOC111482461 OS=Cucurbita maxima OX=3661 GN=LOC111482461...	[more]
A0A6J1EJL0	7.06e-68	82.31	uncharacterized protein LOC111435191 OS=Cucurbita moschata OX=3662 GN=LOC1114351...	[more]

BLAST of CsGy3G024250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63150.1	1.7e-08	44.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013177	Mitochondrial mRNA-processing protein COX24, C-terminal	SMART	SM01155	DUF1713_2	coord: 102..129 e-value: 3.3E-7 score: 39.9
IPR013177	Mitochondrial mRNA-processing protein COX24, C-terminal	PFAM	PF08213	DUF1713	coord: 103..128 e-value: 1.5E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..130
None	No IPR available	PANTHER	PTHR32035	AURORA KINASE A-INTERACTING PROTEIN	coord: 1..130
None	No IPR available	PANTHER	PTHR32035:SF8	SUBFAMILY NOT NAMED	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G024250.2	CsGy3G024250.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing