CsGy3G044105 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G044105
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Keratin, type I cytoskeletal 9-like
Location	Gy14Chr3: 40891914 .. 40892282 (+)
RNA-Seq Expression	CsGy3G044105
Synteny	CsGy3G044105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGGCTTCTCTCAAACTTTCTTCTCTTATGTTCTTCATTTTATGTATTGAGATTTCTAAGGCAGCCAGAGTTCTAACAACTTTTGGTGGTGGTGGAGTACAATATGGTAATCCAAGAAGCCTTGGTGATAGTAGGTATGGTAATTTTAAAGTTAATGGGTATGCAAAATATAATAATGATTATTACTGGGGTTGGATTGGTGGTCAAGGAAGTAGTAGTTATGGAGATGATTATGATAGTCATAGAAGCAGTTGCAAAAGTGGAGGAGGATACAAATATGCTAATTATGGAGGTGGAAACATAGGTGACAACTCATCCGAAGGAAGCAGTGTATATATTATAAGTAAGGAGACTAAACCCTAA

mRNA sequence

ATGAAAATGGCTTCTCTCAAACTTTCTTCTCTTATGTTCTTCATTTTATGTATTGAGATTTCTAAGGCAGCCAGAGTTCTAACAACTTTTGGTGGTGGTGGAGTACAATATGGTAATCCAAGAAGCCTTGGTGATAGTAGGTATGGTAATTTTAAAGTTAATGGGTATGCAAAATATAATAATGATTATTACTGGGGTTGGATTGGTGGTCAAGGAAGTAGTAGTTATGGAGATGATTATGATAGTCATAGAAGCAGTTGCAAAAGTGGAGGAGGATACAAATATGCTAATTATGGAGGTGGAAACATAGGTGACAACTCATCCGAAGGAAGCAGTGTATATATTATAAGTAAGGAGACTAAACCCTAA

Coding sequence (CDS)

ATGAAAATGGCTTCTCTCAAACTTTCTTCTCTTATGTTCTTCATTTTATGTATTGAGATTTCTAAGGCAGCCAGAGTTCTAACAACTTTTGGTGGTGGTGGAGTACAATATGGTAATCCAAGAAGCCTTGGTGATAGTAGGTATGGTAATTTTAAAGTTAATGGGTATGCAAAATATAATAATGATTATTACTGGGGTTGGATTGGTGGTCAAGGAAGTAGTAGTTATGGAGATGATTATGATAGTCATAGAAGCAGTTGCAAAAGTGGAGGAGGATACAAATATGCTAATTATGGAGGTGGAAACATAGGTGACAACTCATCCGAAGGAAGCAGTGTATATATTATAAGTAAGGAGACTAAACCCTAA

Protein sequence

MKMASLKLSSLMFFILCIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNGYAKYNNDYYWGWIGGQGSSSYGDDYDSHRSSCKSGGGYKYANYGGGNIGDNSSEGSSVYIISKETKP*

Homology

[Close]

BLAST of CsGy3G044105 vs. NCBI nr
Match: KAA0038572.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.84e-08
Identity = 57/132 (43.18%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 3   MASLKLS-SLMFFIL-CIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNG---YA 62
           MAS +LS SL+FFIL  IEIS  A         G +YGNP + G  +YG    NG   YA
Sbjct: 1   MASPRLSFSLVFFILFAIEISLIA-------SEGEKYGNPSNFGYRKYGFIGKNGLGGYA 60

Query: 63  K--YNNDYYWG----------WIGGQGSSSYGDDYDSHRSSCKS---GGGYKYA-----N 109
           +  YNNDYYWG          + G   S    ++YD H SSCKS   G GYK       N
Sbjct: 61  EKNYNNDYYWGRWRKSDQGSTYSGNGASGGSSNEYDDHTSSCKSPSNGSGYKSEEPSKEN 120

[Close]

BLAST of CsGy3G044105 vs. NCBI nr
Match: KAE8651440.1 (hypothetical protein Csa_000792 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.16e-05
Identity = 50/101 (49.50%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 1  MKMASLKLSSLMFFIL-CIEISKAARVLTTFGGGGVQYGNPRSLGDSRYG---NFKVNGY 60
          MKMAS KLSSL+FFIL  IEIS  A         G ++G+P +LG  +YG      V GY
Sbjct: 1  MKMASPKLSSLVFFILFAIEISLIA-------SEGEKHGHPNNLGYRKYGFVGKKDVGGY 60

Query: 61 A--KYNNDYYWG-WIG-GQGSS------SYGDDYDSHRSSC 87
              Y+NDYYWG W   GQGSS      S  D+YD H SSC
Sbjct: 61 GDGNYHNDYYWGRWRKYGQGSSYGASEGSSNDEYD-HTSSC 93

[Close]

BLAST of CsGy3G044105 vs. ExPASy TrEMBL
Match: A0A0A0LK39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902240 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 8.07e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 3   MASLKLSSLMFFILCIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNGYAKYNND 62
           MASLKLSSLMFFILCIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNGYAKYNND
Sbjct: 1   MASLKLSSLMFFILCIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNGYAKYNND 60

Query: 63  YYWGWIGGQGSSSYGDDYDSHRSSCKSGGGYKYANYGGGNIGDNSSEGSSVYIISKETKP 122
           YYWGWIGGQGSSSYGDDYDSHRSSCKSGGGYKYANYGGGNIGDNSSEGSSVYIISKETKP
Sbjct: 61  YYWGWIGGQGSSSYGDDYDSHRSSCKSGGGYKYANYGGGNIGDNSSEGSSVYIISKETKP 120

[Close]

BLAST of CsGy3G044105 vs. ExPASy TrEMBL
Match: A0A5A7T532 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G001010 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.80e-08
Identity = 57/132 (43.18%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 3   MASLKLS-SLMFFIL-CIEISKAARVLTTFGGGGVQYGNPRSLGDSRYGNFKVNG---YA 62
           MAS +LS SL+FFIL  IEIS  A         G +YGNP + G  +YG    NG   YA
Sbjct: 1   MASPRLSFSLVFFILFAIEISLIA-------SEGEKYGNPSNFGYRKYGFIGKNGLGGYA 60

Query: 63  K--YNNDYYWG----------WIGGQGSSSYGDDYDSHRSSCKS---GGGYKYA-----N 109
           +  YNNDYYWG          + G   S    ++YD H SSCKS   G GYK       N
Sbjct: 61  EKNYNNDYYWGRWRKSDQGSTYSGNGASGGSSNEYDDHTSSCKSPSNGSGYKSEEPSKEN 120

The following BLAST results are available for this feature:

BLAST of CsGy3G044105 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G044105 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038572.1	7.84e-08	43.18	keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa]	[more]
KAE8651440.1	1.16e-05	49.50	hypothetical protein Csa_000792 [Cucumis sativus]	[more]

BLAST of CsGy3G044105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK39	8.07e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902240 PE=4 SV=1	[more]
A0A5A7T532	3.80e-08	43.18	Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of CsGy3G044105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G044105.1	CsGy3G044105.1	mRNA