CsGy3G013865 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G013865
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Endo/exonuclease/phosphatase domain-containing protein
Location	Gy14Chr3: 10297007 .. 10297324 (+)
RNA-Seq Expression	CsGy3G013865
Synteny	CsGy3G013865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGATCCTGAGGAGTGAACTTCGACGTCTCTGCTCAAGGTTATGGTGGCTGATATGGAAGCACCCGAAGCGGAGGGTTATTGTCAAAAGGTTTGGGAAGATGAATGTGAAAGGTCGACAAAAAGGCAGACCAGATAAAAATAAAGCCAGAGTTTATACGAAGAACCAGTTGTGTGATTCCGTCATCACAAGGCCATTTCGTGTTGCTACATTCAATGTTGCCATGTTCTCTCTTGCGCCGGCTGTCCCAGTTGTGAGAAACCAGCAACATTCGGGTTTGGTAGAAAGGAATACAGTTTTAGAAGCCCTGTGA

mRNA sequence

ATGTTGAGGATCCTGAGGAGTGAACTTCGACGTCTCTGCTCAAGGTTATGGTGGCTGATATGGAAGCACCCGAAGCGGAGGGTTATTGTCAAAAGGTTTGGGAAGATGAATGTGAAAGGTCGACAAAAAGGCAGACCAGATAAAAATAAAGCCAGAGTTTATACGAAGAACCAGTTGTGTGATTCCGTCATCACAAGGCCATTTCGTGTTGCTACATTCAATGTTGCCATGTTCTCTCTTGCGCCGGCTGTCCCAGTTGTGAGAAACCAGCAACATTCGGGTTTGGTAGAAAGGAATACAGTTTTAGAAGCCCTGTGA

Coding sequence (CDS)

ATGTTGAGGATCCTGAGGAGTGAACTTCGACGTCTCTGCTCAAGGTTATGGTGGCTGATATGGAAGCACCCGAAGCGGAGGGTTATTGTCAAAAGGTTTGGGAAGATGAATGTGAAAGGTCGACAAAAAGGCAGACCAGATAAAAATAAAGCCAGAGTTTATACGAAGAACCAGTTGTGTGATTCCGTCATCACAAGGCCATTTCGTGTTGCTACATTCAATGTTGCCATGTTCTCTCTTGCGCCGGCTGTCCCAGTTGTGAGAAACCAGCAACATTCGGGTTTGGTAGAAAGGAATACAGTTTTAGAAGCCCTGTGA

Protein sequence

MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLCDSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSGLVERNTVLEAL*

Homology

[Close]

BLAST of CsGy3G013865 vs. NCBI nr
Match: XP_004134173.1 (uncharacterized protein LOC101215085 [Cucumis sativus] >KGN57048.1 hypothetical protein Csa_010978 [Cucumis sativus])

HSP 1 Score: 173 bits (439), Expect = 1.40e-49
Identity = 87/94 (92.55%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
          DSVITRPFRVATFNVAMFSLAPAVPV       G
Sbjct: 61 DSVITRPFRVATFNVAMFSLAPAVPVAEKPATFG 94

[Close]

BLAST of CsGy3G013865 vs. NCBI nr
Match: XP_008438759.1 (PREDICTED: uncharacterized protein LOC103483772 [Cucumis melo])

HSP 1 Score: 171 bits (432), Expect = 1.54e-48
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVI+KRFGKMNVKGRQKGRPDK+KAR+YTKNQLC
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIIKRFGKMNVKGRQKGRPDKSKARIYTKNQLC 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
          DSVITRPFRVATFNVAMFSLAPAVPV       G
Sbjct: 61 DSVITRPFRVATFNVAMFSLAPAVPVAEKPATFG 94

[Close]

BLAST of CsGy3G013865 vs. NCBI nr
Match: KAA0049421.1 (endonuclease/exonuclease/phosphatase family protein [Cucumis melo var. makuwa] >TYK16099.1 endonuclease/exonuclease/phosphatase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (432), Expect = 1.54e-48
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVI+KRFGKMNVKGRQKGRPDK+KAR+YTKNQLC
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIIKRFGKMNVKGRQKGRPDKSKARIYTKNQLC 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
          DSVITRPFRVATFNVAMFSLAPAVPV       G
Sbjct: 61 DSVITRPFRVATFNVAMFSLAPAVPVAEKPATFG 94

[Close]

BLAST of CsGy3G013865 vs. NCBI nr
Match: XP_038877342.1 (uncharacterized protein LOC120069614 [Benincasa hispida])

HSP 1 Score: 156 bits (394), Expect = 5.72e-43
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDK KARVY K+QL 
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKTKARVYMKSQLR 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPV 86
          DSVI RPFRVATFNVAMFSLA AVPV
Sbjct: 61 DSVIERPFRVATFNVAMFSLAHAVPV 86

[Close]

BLAST of CsGy3G013865 vs. NCBI nr
Match: XP_022138157.1 (uncharacterized protein LOC111009397 [Momordica charantia])

HSP 1 Score: 149 bits (376), Expect = 2.34e-40
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSR+WWLIWKHPKRRVIVKRFGKMNVK R+ GRP KNK+RVYTK+QL 
Sbjct: 1  MLRILRSELRRLCSRIWWLIWKHPKRRVIVKRFGKMNVKHRRTGRPGKNKSRVYTKSQLG 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVP 85
          DSV  RPFRVATFNVAMFSLAPAVP
Sbjct: 61 DSVTERPFRVATFNVAMFSLAPAVP 85

[Close]

BLAST of CsGy3G013865 vs. ExPASy TrEMBL
Match: A0A0A0L5Q2 (Endo/exonuclease/phosphatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G150770 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 6.79e-50
Identity = 87/94 (92.55%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
          DSVITRPFRVATFNVAMFSLAPAVPV       G
Sbjct: 61 DSVITRPFRVATFNVAMFSLAPAVPVAEKPATFG 94

[Close]

BLAST of CsGy3G013865 vs. ExPASy TrEMBL
Match: A0A5D3D0W5 (Endonuclease/exonuclease/phosphatase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00210 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 7.46e-49
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVI+KRFGKMNVKGRQKGRPDK+KAR+YTKNQLC
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIIKRFGKMNVKGRQKGRPDKSKARIYTKNQLC 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
          DSVITRPFRVATFNVAMFSLAPAVPV       G
Sbjct: 61 DSVITRPFRVATFNVAMFSLAPAVPVAEKPATFG 94

[Close]

BLAST of CsGy3G013865 vs. ExPASy TrEMBL
Match: A0A1S3AX67 (uncharacterized protein LOC103483772 OS=Cucumis melo OX=3656 GN=LOC103483772 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 7.46e-49
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSRLWWLIWKHPKRRVI+KRFGKMNVKGRQKGRPDK+KAR+YTKNQLC
Sbjct: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIIKRFGKMNVKGRQKGRPDKSKARIYTKNQLC 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
          DSVITRPFRVATFNVAMFSLAPAVPV       G
Sbjct: 61 DSVITRPFRVATFNVAMFSLAPAVPVAEKPATFG 94

[Close]

BLAST of CsGy3G013865 vs. ExPASy TrEMBL
Match: A0A6J1CAA5 (uncharacterized protein LOC111009397 OS=Momordica charantia OX=3673 GN=LOC111009397 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 1.13e-40
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLRILRSELRRLCSR+WWLIWKHPKRRVIVKRFGKMNVK R+ GRP KNK+RVYTK+QL 
Sbjct: 1  MLRILRSELRRLCSRIWWLIWKHPKRRVIVKRFGKMNVKHRRTGRPGKNKSRVYTKSQLG 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVP 85
          DSV  RPFRVATFNVAMFSLAPAVP
Sbjct: 61 DSVTERPFRVATFNVAMFSLAPAVP 85

[Close]

BLAST of CsGy3G013865 vs. ExPASy TrEMBL
Match: A0A6J1IQG6 (uncharacterized protein LOC111479590 OS=Cucurbita maxima OX=3661 GN=LOC111479590 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 3.50e-38
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
          MLR+LRS+LRRL SRLWWLIWKHPKRRVI+KRFGKMNVKGRQKG  +KNKARVYTK+Q+ 
Sbjct: 1  MLRMLRSKLRRLYSRLWWLIWKHPKRRVIIKRFGKMNVKGRQKG--NKNKARVYTKSQVP 60

Query: 61 DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSG 94
           SVI RPFRVATFNVAMFSLAPAVP+       G
Sbjct: 61 GSVIERPFRVATFNVAMFSLAPAVPIAEKPTSFG 92

[Close]

BLAST of CsGy3G013865 vs. TAIR 10
Match: AT3G21530.1 (DNAse I-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 1   MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVYTKNQLC 60
           ML + R +L  L SRL W+I K  + RVIV+RF K   + R+K  P+   + ++      
Sbjct: 1   MLCVFRRKLGCLFSRLRWVIKKRVRARVIVRRFRKARWRARRKESPESEVSSIH-----L 60

Query: 61  DSVITRPFRVATFNVAMFSLAPAVPVVRNQQHSGLVERNTV 102
            S   R  RVATFNVAMFSLAP V  +      G ++ + +
Sbjct: 61  SSNSGRHIRVATFNVAMFSLAPVVQTMEETAFLGHLDSSNI 96

The following BLAST results are available for this feature:

BLAST of CsGy3G013865 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G013865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134173.1	1.40e-49	92.55	uncharacterized protein LOC101215085 [Cucumis sativus] >KGN57048.1 hypothetical ...	[more]
XP_008438759.1	1.54e-48	89.36	PREDICTED: uncharacterized protein LOC103483772 [Cucumis melo]	[more]
KAA0049421.1	1.54e-48	89.36	endonuclease/exonuclease/phosphatase family protein [Cucumis melo var. makuwa] >...	[more]
XP_038877342.1	5.72e-43	93.02	uncharacterized protein LOC120069614 [Benincasa hispida]	[more]
XP_022138157.1	2.34e-40	88.24	uncharacterized protein LOC111009397 [Momordica charantia]	[more]

BLAST of CsGy3G013865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Q2	6.79e-50	92.55	Endo/exonuclease/phosphatase domain-containing protein OS=Cucumis sativus OX=365...	[more]
A0A5D3D0W5	7.46e-49	89.36	Endonuclease/exonuclease/phosphatase family protein OS=Cucumis melo var. makuwa ...	[more]
A0A1S3AX67	7.46e-49	89.36	uncharacterized protein LOC103483772 OS=Cucumis melo OX=3656 GN=LOC103483772 PE=...	[more]
A0A6J1CAA5	1.13e-40	88.24	uncharacterized protein LOC111009397 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1IQG6	3.50e-38	78.72	uncharacterized protein LOC111479590 OS=Cucurbita maxima OX=3661 GN=LOC111479590...	[more]

BLAST of CsGy3G013865 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21530.1	2.2e-09	38.61	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14859:SF10	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR14859	CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G013865.1	CsGy3G013865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0004527	exonuclease activity