CsGy7G007870 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G007870
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionfolate transporter 1, chloroplastic isoform X2
LocationGy14Chr7: 6047568 .. 6050180 (-)
RNA-Seq ExpressionCsGy7G007870
SyntenyCsGy7G007870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCGTTCGAAGGGAAGCTTCTCCCCTTTTGCATTCGTCGTTCTTCGTTCTCCCCTTTCACCGTTCTCAAGCTTTCACGATTCTCAAGCTTCCACCGTTCATCGTTCTCCCTTCGTTCATTCACCGTTCAGTTCATCGTTCACCGTTCACCGTTCACCATTCGAAACTCGTACAGAAGCGTGAGCCATCGGTGATAATGCCTCTGCCAAAGACTTAGGAATAGACACAGAGGAGAGAGACCCTTTCTTTCTATGGGTTTTCCAATGGTCATTTCTTATGCTTATATTTATGTGTTTTTGCTTTTAGAAAGTAGGGGGTGTTTGACTGTGTTTTCTACTTTTTCGTTCAGGAAATCACTACATTTGTAACTAATTTGAATAGCTTGCATCCTATTTTGACTGAATGTCGTGTCTTGAAATCAGAACTGGAGCTTGCTCTTATTCAATTTGCCGATGATATTAGCTCATAAGCTCATGTTCAGGAAACAATTAGCTCGAAGGCCTTTACTGAAAGGTTGGTTTTGGACTGGGGATGAAGTTGTTCAACTTGTTTGATATTTACTTTATGTTGTTCCATTCTAAGTAAAGTTGTAAATTTCTTCACATTATGCTTCTATTGGAACCAAAGTACAAGAAATTATTTTACATTACGTGTTTTGAAAAAATTTCAAATCCTTCATTTTGAAATCTTGAAAAAATCAACCATTTTAGTTTGAAATATTTGTAGCAAACTTTGAAACTAATTGGCAGGAGTGCTTCAAAAGAAGACACTAAAAGCTTGGAAGAAAAAAAAGTAGTGGAACTGAACTTCAATTTAATCTTGGTGGTTTCTTTGGCGCTTTCATTATTTCAATGAAGAATTTCTCATTTCTTGTTCAAAAAATATAAATGAATTCATTTTTATTATGCCTCTAAGTACACTTTCTTTTCAAATCCTTTAGTTTATATCATTCATACGTAAAATATATTCATCCTTGTTCCAAGTGAATGGTCAATTTACAAGTGACCAGTAGCTGATATATAATGTAAGTAGCTCTTGAAATGCAATGCACAACTTTTCTCCTAACCATCGCTCCCGTGGCATAATTATTAGTTACCTTTTCTTTCTTTTTCCCCTTTGCTTTCTTATTTTCTCTTTTAGACTTGTGAGTGTAAATTTGTTACCCTTTTGTTGCAGGTTGTCCTCAAGGCTCACTGATGTTGTTATATCAGTTATGAAACCTGGAATAAACTGGGTTGAAATGTACAAGTAGGCTTTATTTAGATCCCGTCTTTACTTTCTTTTGTGCATATAAGATAGTTTGAGGAGTAAATTGTGCGACTCATTTCTCTGGAATAAACGACTCATTTCTTTATTTAGATCTCGTATTATGTCTTGATCTTGACTTTATTAGGTTGTCTAATTACAAGCTCAGGACATTGAACCATTTTCTTCTTTGACCACAGTACTGAAGGTGCGTTGTTCTGTCTTCTACTCTTGTCTAACTTCTCTTTTTGGGGCAGATCATTAGCAAAATATTTGATGCTTTAAGTTGCGTGCATAATATAGGTTTTTCTGTTTGTTTTGGTGTGTTCTAGGATTTAATTTTTTGAGTAAATGTTGTAACTATGTTCAGTGCTTGCTCTGTTATAACATGTCTTTTATATGCATAATTTTTTTAGCTGGAATTTCTCTATCAAATATAGTTGCACCACCCATTGTCTCTGGTCACCAACCATGTTGCCATGGACATTTGGGTTACCCAGCGATTCTTGGTAAATAGCTACCTTCATTGATGTTTTTTTTATATCACGTTCATGGATTTGGATGATTTTGTTATGTATGAATTCTGGCAAATGATGACAAATTTGGAATCTACAAATCAATATCGTGGTTCCTCCTAGGATTTTGTGTAGAATTTTTGCTCAAATATTGTTGTTTAATTGATGATGAATTGCTTGCTTTGTCTAGGGATTGAATTTTATGGTGTTTCATGTGGTCTTTGATAATGATCATGATGGTTTTGCTTTGTCTAGGGATTGAATTTTATGGTGTTTCATGTGGTCTTTGATAATGATCATGATGGTTTTGCTTTGTTACTTCCTTGCACATATTGGTATCAGTTGGTTTAATAATTATTAATTGGGTGTATGATGATTTATAATTGAATTTTTGTATATATTGCTTCAGCTATTATTGATATGAATGTGTAAGTAATATCTCAATGTTTAGTTTGAATATCACTCTTAATAATGTATAGTTAAAGAGAACGAATGAGTTTTTTCAATTGAAGAAATGATGGTGAGAAAATTGTGTTTCTGTTTCTTTATAATGTAGTGACTTCCATAAGGTATTGGAAACTTTTATTCACCAAAAAAAAAAAGAACTATTAGTCATCTAGGTTCTTACAAGAGAACAAATATGGTGAAATTTCTCATGAATGAGTGTGAGGAATTAGAAAGGAATAAAATTTCCTCTGTCGCTTGTTTATATATCCTGCAGGTTTGAAGGCATTCATGGGTTTTACAGGAGAATTACACCAAGCCTTCTAAATAATGTCTCAGTGATCTCAATCACGTTTATTGTGTATGAAAACGTCTTAAACTTGATCAAACTAACAAGACAAAAGGAATAA

mRNA sequence

CGCGTTCGAAGGGAAGCTTCTCCCCTTTTGCATTCGTCGTTCTTCGTTCTCCCCTTTCACCGTTCTCAAGCTTTCACGATTCTCAAGCTTCCACCGTTCATCGTTCTCCCTTCGTTCATTCACCGTTCAGTTCATCGTTCACCGTTCACCGTTCACCATTCGAAACTCGTACAGAAGCGTGAGCCATCGGTGATAATGCCTCTGCCAAAGACTTAGGAATAGACACAGAGGAGAGAGACCCTTTCTTTCTATGGGTTTTCCAATGGAAATCACTACATTTGTAACTAATTTGAATAGCTTGCATCCTATTTTGACTGAATGTCGTGTCTTGAAATCAGAACTGGAGCTTGCTCTTATTCAATTTGCCGATGATATTAGCTCATAAGCTCATGTTCAGGAAACAATTAGCTCGAAGGCCTTTACTGAAAGGTTGTCCTCAAGGCTCACTGATGTTGTTATATCAGTTATGAAACCTGGAATAAACTGGGTTGAAATGTACAATACTGAAGCTGGAATTTCTCTATCAAATATAGTTGCACCACCCATTGTCTCTGGTCACCAACCATGTTGCCATGGACATTTGGGTTACCCAGCGATTCTTGTGACTTCCATAAGGTTTGAAGGCATTCATGGGTTTTACAGGAGAATTACACCAAGCCTTCTAAATAATGTCTCAGTGATCTCAATCACGTTTATTGTGTATGAAAACGTCTTAAACTTGATCAAACTAACAAGACAAAAGGAATAA

Coding sequence (CDS)

ATGAAACCTGGAATAAACTGGGTTGAAATGTACAATACTGAAGCTGGAATTTCTCTATCAAATATAGTTGCACCACCCATTGTCTCTGGTCACCAACCATGTTGCCATGGACATTTGGGTTACCCAGCGATTCTTGTGACTTCCATAAGGTTTGAAGGCATTCATGGGTTTTACAGGAGAATTACACCAAGCCTTCTAAATAATGTCTCAGTGATCTCAATCACGTTTATTGTGTATGAAAACGTCTTAAACTTGATCAAACTAACAAGACAAAAGGAATAA

Protein sequence

MKPGINWVEMYNTEAGISLSNIVAPPIVSGHQPCCHGHLGYPAILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTRQKE*
Homology
[Close]
BLAST of CsGy7G007870 vs. ExPASy Swiss-Prot
Match: Q7XA87 (Folate transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FOLT1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 44  ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIK 88
           ++  + R+EG+ GFYR +T +LL NV   SITFIVYENVL L+K
Sbjct: 258 VIRETARYEGLRGFYRGLTANLLKNVPASSITFIVYENVLKLLK 301

[Close]
BLAST of CsGy7G007870 vs. ExPASy Swiss-Prot
Match: Q6IZB5 (Mitochondrial folate transporter/carrier OS=Cricetulus griseus OX=10029 GN=SLC25A32 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-04
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0 

Query: 40  GYPAILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTRQKE 94
           G   ++V + R EGI GFY+ I P+L+       ITF+VYENV + +   R+K+
Sbjct: 261 GVMDVIVKTWRKEGIGGFYKGIAPNLIRVTPACCITFVVYENVSHFLCGLREKK 314

[Close]
BLAST of CsGy7G007870 vs. NCBI nr
Match: KAE8649609.1 (hypothetical protein Csa_012191, partial [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 4.23e-15
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 11 YNTEAGISLSNIVAPPIVSGHQPCCHGHLGYPAIL 45
          ++TEAGISLSNIVAPPIVSGHQPCCHGHLGY AIL
Sbjct: 16 HSTEAGISLSNIVAPPIVSGHQPCCHGHLGYQAIL 50

[Close]
BLAST of CsGy7G007870 vs. NCBI nr
Match: XP_008440772.1 (PREDICTED: folate transporter 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.98e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 243 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 302

[Close]
BLAST of CsGy7G007870 vs. NCBI nr
Match: XP_008440771.1 (PREDICTED: folate transporter 1, chloroplastic isoform X1 [Cucumis melo] >XP_016899232.1 PREDICTED: folate transporter 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.99e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 244 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 303

[Close]
BLAST of CsGy7G007870 vs. NCBI nr
Match: TYK12585.1 (folate transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 2.11e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 251 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 310

[Close]
BLAST of CsGy7G007870 vs. NCBI nr
Match: KAA0025710.1 (folate transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 2.11e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 251 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 310

[Close]
BLAST of CsGy7G007870 vs. ExPASy TrEMBL
Match: A0A1S3B1G4 (folate transporter 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485089 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.57e-14
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 243 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 302

[Close]
BLAST of CsGy7G007870 vs. ExPASy TrEMBL
Match: A0A1S3B2N4 (folate transporter 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485089 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.66e-14
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 244 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 303

[Close]
BLAST of CsGy7G007870 vs. ExPASy TrEMBL
Match: A0A5A7SHT3 (Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G002040 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.02e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 251 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 310

[Close]
BLAST of CsGy7G007870 vs. ExPASy TrEMBL
Match: A0A5D3CM20 (Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001670 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.02e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  + RFEGI GFYR ITP+LL NV   SITFIVYENVLNL+KLTR
Sbjct: 251 GHDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKLTR 310

[Close]
BLAST of CsGy7G007870 vs. ExPASy TrEMBL
Match: A0A0A0KKJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504580 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.84e-13
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 37  GHLGYPA------ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIKLTR 93
           GH G P       +L  ++RFEGI GFYR ITP+LL NV   SITFIVYENVL L+KLTR
Sbjct: 243 GHDGIPRYMDSFHVLKETVRFEGIRGFYRGITPNLLKNVPAASITFIVYENVLKLLKLTR 302

[Close]
BLAST of CsGy7G007870 vs. TAIR 10
Match: AT5G66380.1 (folate transporter 1 )

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-08
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 44  ILVTSIRFEGIHGFYRRITPSLLNNVSVISITFIVYENVLNLIK 88
           ++  + R+EG+ GFYR +T +LL NV   SITFIVYENVL L+K
Sbjct: 258 VIRETARYEGLRGFYRGLTANLLKNVPASSITFIVYENVLKLLK 301

The following BLAST results are available for this feature:
BLAST of CsGy7G007870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XA871.1e-0656.82Folate transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FOLT1 PE=... [more]
Q6IZB58.9e-0440.74Mitochondrial folate transporter/carrier OS=Cricetulus griseus OX=10029 GN=SLC25... [more]
BLAST of CsGy7G007870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649609.14.23e-1591.43hypothetical protein Csa_012191, partial [Cucumis sativus][more]
XP_008440772.11.98e-1365.08PREDICTED: folate transporter 1, chloroplastic isoform X2 [Cucumis melo][more]
XP_008440771.11.99e-1365.08PREDICTED: folate transporter 1, chloroplastic isoform X1 [Cucumis melo] >XP_016... [more]
TYK12585.12.11e-1365.08folate transporter 1 [Cucumis melo var. makuwa][more]
KAA0025710.12.11e-1365.08folate transporter 1 [Cucumis melo var. makuwa][more]
BLAST of CsGy7G007870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B1G49.57e-1465.08folate transporter 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A1S3B2N49.66e-1465.08folate transporter 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5A7SHT31.02e-1365.08Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253... [more]
A0A5D3CM201.02e-1365.08Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255... [more]
A0A0A0KKJ51.84e-1363.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504580 PE=3 SV=1[more]
BLAST of CsGy7G007870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G66380.18.0e-0856.82folate transporter 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023395Mitochondrial carrier domain superfamilyGENE3D1.50.40.10Mitochondrial carrier domaincoord: 27..93
e-value: 4.8E-6
score: 27.6
IPR023395Mitochondrial carrier domain superfamilySUPERFAMILY103506Mitochondrial carriercoord: 39..85
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 45..87
e-value: 3.9E-5
score: 23.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G007870.2CsGy7G007870.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006862 nucleotide transport
biological_process GO:0015711 organic anion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015230 FAD transmembrane transporter activity
molecular_function GO:0008517 folic acid transmembrane transporter activity