CsGy7G013215 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G013215
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr7: 17107155 .. 17108047 (+)
RNA-Seq Expression	CsGy7G013215
Synteny	CsGy7G013215

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAACCAAGAGAGGAAGAAGTTCTTATGAGGGTGTACTACTCAGTTGAGAATGATCTTATATTGGAAAGGCTAGAAAGAATAGAGAAAAATCAAGTGATAAATGAAATGTTGAATGAAAACCAACGAGTTCTTACGAGGACTCAAACCTTACTGAAAGAGCAAATGGAACTACTGATGGAGAAAACGAATCTATTGGTGAATAAGATGGAAAATATAGAATGGAATGTAAAGGAACAAGTTAACGACCAACAATTTATGGTATGTAGTATAATTACATTTTAATTACATGTTCTATTACATATATTACTCAATAAAAATATTTACATACTATTGCCTTTGAAATCTAAACAGGCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAGGTAATAAAATACAACATGATCTTGTTTAAATAAATCAGTCGATGATATTTGATAATCTTATGTCATGAAATAGAATGTCGAAGATCCAGACGATATAATTGACAATGTCATAAAAAACTTTCTTCAAGGCATTTTTGCTACTAAAAATTAAACCTTCTTTTATGTCGAAGTCTACAGCACATGAATCCAAATTTACTAAATCAACGACATTAGATGTGCAGTTGGAAGTTCTTGATGGGGACCCCGAAATAGGAAAATTTGATGAACAAGATGGAACATGA

mRNA sequence

ATGCAGAAACCAAGAGAGGAAGAAGTTCTTATGAGGGTGTACTACTCAGTTGAGAATGATCTTATATTGGAAAGGCTAGAAAGAATAGAGAAAAATCAAGTGATAAATGAAATGTTGAATGAAAACCAACGAGTTCTTACGAGGACTCAAACCTTACTGAAAGAGCAAATGGAACTACTGATGGAGAAAACGAATCTATTGGTGAATAAGATGGAAAATATAGAATGGAATGTAAAGGAACAAGTTAACGACCAACAATTTATGGCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAGAATGTCGAAGATCCAGACGATATAATTGACAATTCTACAGCACATGAATCCAAATTTACTAAATCAACGACATTAGATGTGCAGTTGGAAGTTCTTGATGGGGACCCCGAAATAGGAAAATTTGATGAACAAGATGGAACATGA

Coding sequence (CDS)

ATGCAGAAACCAAGAGAGGAAGAAGTTCTTATGAGGGTGTACTACTCAGTTGAGAATGATCTTATATTGGAAAGGCTAGAAAGAATAGAGAAAAATCAAGTGATAAATGAAATGTTGAATGAAAACCAACGAGTTCTTACGAGGACTCAAACCTTACTGAAAGAGCAAATGGAACTACTGATGGAGAAAACGAATCTATTGGTGAATAAGATGGAAAATATAGAATGGAATGTAAAGGAACAAGTTAACGACCAACAATTTATGGCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAGAATGTCGAAGATCCAGACGATATAATTGACAATTCTACAGCACATGAATCCAAATTTACTAAATCAACGACATTAGATGTGCAGTTGGAAGTTCTTGATGGGGACCCCGAAATAGGAAAATTTGATGAACAAGATGGAACATGA

Protein sequence

MQKPREEEVLMRVYYSVENDLILERLERIEKNQVINEMLNENQRVLTRTQTLLKEQMELLMEKTNLLVNKMENIEWNVKEQVNDQQFMAATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNLVNQQIEQPNEDKESKRDGGRNTSHENVEDPDDIIDNSTAHESKFTKSTTLDVQLEVLDGDPEIGKFDEQDGT*

Homology

[Close]

BLAST of CsGy7G013215 vs. NCBI nr
Match: KAE8650661.1 (hypothetical protein Csa_011654 [Cucumis sativus])

HSP 1 Score: 226 bits (576), Expect = 6.06e-72
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 48  RTQTLLKEQMELLMEKTNLLVNKMENIEWNVKEQVNDQQFMAATEFQMRLDSI-EKEEDV 107
           RTQ LLKEQMELLMEK NL+VNKME IEWNVKEQVNDQQFMAATEFQ RLDSI E+EE+V
Sbjct: 2   RTQALLKEQMELLMEKMNLMVNKMEKIEWNVKEQVNDQQFMAATEFQRRLDSIKEEEEEV 61

Query: 108 NEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNLVNQQIEQPNEDKESKRDG 167
           N KNLDANTS GVDKFQPKKYDENEGDEGDENKQH TT+PNLVNQQIEQPNEDKESKR+G
Sbjct: 62  NVKNLDANTSSGVDKFQPKKYDENEGDEGDENKQHQTTSPNLVNQQIEQPNEDKESKREG 121

Query: 168 GRNTSHENVEDPDDIID 183
           GRNTSH+ VEDPDDIID
Sbjct: 122 GRNTSHKIVEDPDDIID 138

[Close]

BLAST of CsGy7G013215 vs. NCBI nr
Match: KAE8646261.1 (hypothetical protein Csa_015606, partial [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 7.94e-50
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 89  AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 148
           AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL
Sbjct: 1   AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 60

Query: 149 VNQQIEQPNEDKESKRDGGRNTSHE 173
           VNQQIEQPNEDKESKRDGGRNTSHE
Sbjct: 61  VNQQIEQPNEDKESKRDGGRNTSHE 85

[Close]

BLAST of CsGy7G013215 vs. NCBI nr
Match: KAE8646260.1 (hypothetical protein Csa_016826, partial [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 1.42e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MQKPREEEVLMRVYYSVENDLILERLERIEKNQVINEMLNENQRVLTRTQTLLKEQMELL 60
          MQKPREEEVLMRVYYSVENDLILERLERIEKNQVINEMLNENQRVLTRTQTLLKEQMELL
Sbjct: 1  MQKPREEEVLMRVYYSVENDLILERLERIEKNQVINEMLNENQRVLTRTQTLLKEQMELL 60

Query: 61 MEKTNLLVNKMENIEWNVKEQVNDQQFM 88
          MEKTNLLVNKMENIEWNVKEQVNDQQFM
Sbjct: 61 MEKTNLLVNKMENIEWNVKEQVNDQQFM 88

[Close]

BLAST of CsGy7G013215 vs. NCBI nr
Match: XP_038889592.1 (uncharacterized protein LOC120079469 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 3.56e-06
Identity = 36/105 (34.29%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 48  RTQTLLKEQMELLMEKTNLLVNKMENIEWNVKEQVNDQQFMAATEFQMRLDSIEKEEDVN 107
           + Q  L++QM  LM+K NL++ + + +E +   Q   + FM A EF   LD++E ++  N
Sbjct: 2   KNQDSLRQQMIELMDKMNLILEQTKRMEEHAYTQNTGEVFMVAFEFTKTLDTMEDDKGDN 61

Query: 108 EKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNLVNQQ 152
           + N + N +CGV+K + K+ DE+EG     N++      N+V QQ
Sbjct: 62  QDNPNLNMACGVEKLKSKRDDEHEGGGRTGNRERKNILSNMVTQQ 106

The following BLAST results are available for this feature:

BLAST of CsGy7G013215 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G013215 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650661.1	6.06e-72	89.05	hypothetical protein Csa_011654 [Cucumis sativus]	[more]
KAE8646261.1	7.94e-50	100.00	hypothetical protein Csa_015606, partial [Cucumis sativus]	[more]
KAE8646260.1	1.42e-48	100.00	hypothetical protein Csa_016826, partial [Cucumis sativus]	[more]
XP_038889592.1	3.56e-06	34.29	uncharacterized protein LOC120079469 [Benincasa hispida]	[more]

BLAST of CsGy7G013215 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy7G013215 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G013215.1	CsGy7G013215.1	mRNA