Cp4.1LG20g03500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g03500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDUF4228 domain-containing protein
LocationCp4.1LG20: 2062485 .. 2062796 (+)
RNA-Seq ExpressionCp4.1LG20g03500
SyntenyCp4.1LG20g03500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTTTGCCGGAGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGCGGCGGAAACGCCTCAACCTCCAGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGCAAACGTCGTCGTGTCCACAGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGTGAAGAATCTGGAGATAGAAGGCTTGAGTCTAGAACAAGTAATTGGGCGGATGATGAACGATGAGGACGAATTTCAAGGTGAGCACCATCGCTCGTGGAGACCTTCTCTTCAAAGCATTCCAGAGTGA

mRNA sequence

ATGGTCTTTGCCGGAGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGCGGCGGAAACGCCTCAACCTCCAGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGCAAACGTCGTCGTGTCCACAGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGTGAAGAATCTGGAGATAGAAGGCTTGAGTCTAGAACAAGTAATTGGGCGGATGATGAACGATGAGGACGAATTTCAAGGTGAGCACCATCGCTCGTGGAGACCTTCTCTTCAAAGCATTCCAGAGTGA

Coding sequence (CDS)

ATGGTCTTTGCCGGAGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGCGGCGGAAACGCCTCAACCTCCAGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGCAAACGTCGTCGTGTCCACAGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGTGAAGAATCTGGAGATAGAAGGCTTGAGTCTAGAACAAGTAATTGGGCGGATGATGAACGATGAGGACGAATTTCAAGGTGAGCACCATCGCTCGTGGAGACCTTCTCTTCAAAGCATTCCAGAGTGA

Protein sequence

MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE
Homology
BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_023520212.1 (uncharacterized protein LOC111783515 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206 bits (523), Expect = 1.31e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED
Sbjct: 12  MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE
Sbjct: 72  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_022933211.1 (uncharacterized protein LOC111440057 [Cucurbita moschata])

HSP 1 Score: 205 bits (522), Expect = 1.86e-66
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           M+FAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED
Sbjct: 12  MIFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE
Sbjct: 72  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: KAG6584086.1 (hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019687.1 hypothetical protein SDJN02_18650, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (516), Expect = 1.53e-65
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           M+FAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED
Sbjct: 12  MIFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           LVKNLEIEGLSLEQVIGRM NDEDEFQGEHHRSWRPSLQSIPE
Sbjct: 72  LVKNLEIEGLSLEQVIGRMTNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_023001321.1 (uncharacterized protein LOC111495485 [Cucurbita maxima])

HSP 1 Score: 202 bits (513), Expect = 4.39e-65
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           MVFAGDDWGSFSSKHGRGRGGNAS S GDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED
Sbjct: 12  MVFAGDDWGSFSSKHGRGRGGNASASRGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE
Sbjct: 72  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_038895954.1 (uncharacterized protein LOC120084128 [Benincasa hispida])

HSP 1 Score: 175 bits (444), Expect = 1.61e-54
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           MVF GDDWGSFSSKHGRGRGGNA+TS GDPEKYRLLGEK+ +SC QPQVKIKM+KRELED
Sbjct: 12  MVFVGDDWGSFSSKHGRGRGGNATTSGGDPEKYRLLGEKEAASCSQPQVKIKMSKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRM-MNDEDEFQGEHHRSWRPSLQSIPE 103
           LVK LE++G+SLEQVIGRM MN EDEF+ EHHRSWRPSLQSIPE
Sbjct: 72  LVKKLEMQGMSLEQVIGRMVMNGEDEFEVEHHRSWRPSLQSIPE 115

BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A6J1EYG4 (uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC111440057 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 9.01e-67
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           M+FAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED
Sbjct: 12  MIFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE
Sbjct: 72  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A6J1KIA5 (uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 2.13e-65
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 60
           MVFAGDDWGSFSSKHGRGRGGNAS S GDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED
Sbjct: 12  MVFAGDDWGSFSSKHGRGRGGNASASRGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELED 71

Query: 61  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE
Sbjct: 72  LVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A1S3BEX3 (uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=4 SV=1)

HSP 1 Score: 160 bits (405), Expect = 4.88e-49
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGE-KQTSSCPQPQVKIKMTKRELE 60
           MVFAGDDWGSFSSKHGRG GGNA+TS GDPEK+RLLG+ K+ +SC QP VKIKMTKRELE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGNATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRELE 60

Query: 61  DLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
            LVK LE++GL+LEQVIGRMM  E+E++ EHHRSWRPSLQSIPE
Sbjct: 61  VLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPE 104

BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A5A7UTK3 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005800 PE=4 SV=1)

HSP 1 Score: 160 bits (405), Expect = 6.87e-49
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGE-KQTSSCPQPQVKIKMTKRELE 60
           MVFAGDDWGSFSSKHGRG GGNA+TS GDPEK+RLLG+ K+ +SC QP VKIKMTKRELE
Sbjct: 12  MVFAGDDWGSFSSKHGRGCGGNATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRELE 71

Query: 61  DLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
            LVK LE++GL+LEQVIGRMM  E+E++ EHHRSWRPSLQSIPE
Sbjct: 72  VLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPE 115

BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A0A0LRL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.01e-48
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRGGN--ASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKREL 60
           MVFAGDDWGSFSSKHGRG G N  A+TS GDPEK+RLLGEK+  SC QP VKIKMTKREL
Sbjct: 12  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKREL 71

Query: 61  EDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 103
           E LVK LE++GLSLEQVIGRMM  E+EF+ EHHRSWRPSLQSIPE
Sbjct: 72  EVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 116

BLAST of Cp4.1LG20g03500 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-10
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 3   FAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGE-------KQTSSCPQPQVKIKMTK 62
           ++GDD GS++ +  R R       + D EK  LLGE         +SS  + ++KI++TK
Sbjct: 15  WSGDDNGSYNKRRRRRRSTVVHDDNDDGEK--LLGETSNVTSTSSSSSSERREIKIRITK 74

Query: 63  RELEDLVKNLEIEGLSLEQVIGRMM---NDEDEFQG----EHHRSWRPSLQSIPE 104
           +ELEDL++N+ ++ L+ E+++ +++    D+  F       HH+ W+P LQSIPE
Sbjct: 75  KELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKPVLQSIPE 127

BLAST of Cp4.1LG20g03500 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 0

Query: 1   MVFAGDDWGSFSSKHGRGRG-GNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELE 60
           M +AG+DW  F ++        + +T  G P    ++     SS P  ++KI++TK++L 
Sbjct: 11  MHWAGEDWDEFITEDEEDHHYSSKTTRDGKPV---IVTRDSKSSVPSHEIKIRLTKKQLH 70

Query: 61  DLVKNLEIEGLSLEQVIGR--MMNDEDEFQGEHHRSWRPSLQSIPE 104
           DL+  + +  L+ +Q      ++N+    +    R WRP LQSIPE
Sbjct: 71  DLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPE 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023520212.11.31e-66100.00uncharacterized protein LOC111783515 [Cucurbita pepo subsp. pepo][more]
XP_022933211.11.86e-6699.03uncharacterized protein LOC111440057 [Cucurbita moschata][more]
KAG6584086.11.53e-6598.06hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023001321.14.39e-6598.06uncharacterized protein LOC111495485 [Cucurbita maxima][more]
XP_038895954.11.61e-5484.62uncharacterized protein LOC120084128 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1EYG49.01e-6799.03uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC1114400... [more]
A0A6J1KIA52.13e-6598.06uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485... [more]
A0A1S3BEX34.88e-4978.85uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=... [more]
A0A5A7UTK36.87e-4978.85DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0LRL11.01e-4880.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21920.13.2e-1034.78unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT3G20340.12.2e-0630.19Expression of the gene is downregulated in the presence of paraquat, an inducer ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..103
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 1..103
NoneNo IPR availablePANTHERPTHR33647:SF10DOMAIN PROTEIN, PUTATIVE-RELATEDcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g03500.1Cp4.1LG20g03500.1mRNA