CsGy1G007210 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G007210
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 4598962 .. 4599428 (+)
RNA-Seq Expression	CsGy1G007210
Synteny	CsGy1G007210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGATCGCCGGTTCTGTTTTCGTTTCGTTTCGGTCAAAAGCATTCGCCTAATTCAAAATCGGATTGCGCTTTTCCCATTTCCTCACCCAACTTCCATCTTCCCTCCCTTCTTACGTCTCGTTCTCTGTTGTTATATAAATCCCCTCACCCTCTTAAACCTTTCTCCGTTCTACACATCATTCCAACCCATTCTTCCATTTACGCCTTTTTTTTCTTCTTTTTTTTCTTTTTGGGTTTGTTGGGATGGAGATCGTTTCCGATATCCGAGAGACAAACAGTATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

mRNA sequence

AAAGGATCGCCGGTTCTGTTTTCGTTTCGTTTCGGTCAAAAGCATTCGCCTAATTCAAAATCGGATTGCGCTTTTCCCATTTCCTCACCCAACTTCCATCTTCCCTCCCTTCTTACGTCTCGTTCTCTGTTGTTATATAAATCCCCTCACCCTCTTAAACCTTTCTCCGTTCTACACATCATTCCAACCCATTCTTCCATTTACGCCTTTTTTTTCTTCTTTTTTTTCTTTTTGGGTTTGTTGGGATGGAGATCGTTTCCGATATCCGAGAGACAAACAGTATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Coding sequence (CDS)

ATGGAGATCGTTTCCGATATCCGAGAGACAAACAGTATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Protein sequence

MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGDS*

Homology

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_013611, partial [Cucumis sativus])

HSP 1 Score: 149 bits (375), Expect = 4.25e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60
          MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 73
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: TYJ99047.1 (hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 1.09e-38
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60
          MEI SD+RE NS EKIE PFPVHSQVRKIKEES+T +DWRPGQPEIRPPTA+FRQISRSP
Sbjct: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60

Query: 61 LGISGRPISVGDS 73
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: KAG7012158.1 (hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 3.44e-25
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 4  VSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRS 63
          V++     +MEKI   FPVHSQVRKIKEES+T IDW PGQPEIRP  A+FR     ISRS
Sbjct: 6  VNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRS 65

Query: 64 PLGISGRPISVGDS 73
          PLGISGRPISVGDS
Sbjct: 66 PLGISGRPISVGDS 79

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: KAG6584306.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (262), Expect = 2.61e-24
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 8   RETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFR----QISRSPLGI 67
           ++   MEKI  PFPVHSQVRKIKEES+  IDWRPGQPEI+PP A+FR    QISRSPLG+
Sbjct: 615 KQNTRMEKIGTPFPVHSQVRKIKEESEMIIDWRPGQPEIKPPPAAFREINRQISRSPLGV 674

Query: 68  SGRPISVGDS 73
           SGRPISVG+S
Sbjct: 675 SGRPISVGES 684

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: RXH77210.1 (hypothetical protein DVH24_023484 [Malus domestica] >TQD72649.1 hypothetical protein C1H46_041834 [Malus baccata])

HSP 1 Score: 85.9 bits (211), Expect = 4.82e-20
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 8  RETNSMEKIE-----APFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTAS--FRQISRSP 67
          R +N+  K+E       FPVHSQVRKIK+ESD TIDW PG+PE+R P      RQISRSP
Sbjct: 4  RNSNNSRKMEEGFEEVGFPVHSQVRKIKQESDKTIDWLPGKPEMRRPVFKEITRQISRSP 63

Query: 68 LGISGRPISVGDS 73
          LGIS RPISVGDS
Sbjct: 64 LGISCRPISVGDS 76

[Close]

BLAST of CsGy1G007210 vs. ExPASy TrEMBL
Match: A0A0A0LQJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.06e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60
          MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 73
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of CsGy1G007210 vs. ExPASy TrEMBL
Match: A0A5D3BIV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002510 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 5.30e-39
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60
          MEI SD+RE NS EKIE PFPVHSQVRKIKEES+T +DWRPGQPEIRPPTA+FRQISRSP
Sbjct: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60

Query: 61 LGISGRPISVGDS 73
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of CsGy1G007210 vs. ExPASy TrEMBL
Match: A0A498I238 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.33e-20
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 8  RETNSMEKIE-----APFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTAS--FRQISRSP 67
          R +N+  K+E       FPVHSQVRKIK+ESD TIDW PG+PE+R P      RQISRSP
Sbjct: 4  RNSNNSRKMEEGFEEVGFPVHSQVRKIKQESDKTIDWLPGKPEMRRPVFKEITRQISRSP 63

Query: 68 LGISGRPISVGDS 73
          LGIS RPISVGDS
Sbjct: 64 LGISCRPISVGDS 76

[Close]

BLAST of CsGy1G007210 vs. ExPASy TrEMBL
Match: A0A540KEP9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_041834 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.33e-20
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 8  RETNSMEKIE-----APFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTAS--FRQISRSP 67
          R +N+  K+E       FPVHSQVRKIK+ESD TIDW PG+PE+R P      RQISRSP
Sbjct: 4  RNSNNSRKMEEGFEEVGFPVHSQVRKIKQESDKTIDWLPGKPEMRRPVFKEITRQISRSP 63

Query: 68 LGISGRPISVGDS 73
          LGIS RPISVGDS
Sbjct: 64 LGISCRPISVGDS 76

[Close]

BLAST of CsGy1G007210 vs. ExPASy TrEMBL
Match: A0A540NFV0 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004486 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.71e-20
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 8  RETNSMEKIE-----APFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTAS--FRQISRSP 67
          R +N+  KIE       FPVHSQV+KIK+ESD TIDW PG PE+R P      RQ+SRSP
Sbjct: 4  RNSNNSRKIEEGLEEVGFPVHSQVKKIKQESDKTIDWLPGNPEMRRPVFKEITRQVSRSP 63

Query: 68 LGISGRPISVGDS 73
          LGIS RPISVGDS
Sbjct: 64 LGISCRPISVGDS 76

[Close]

BLAST of CsGy1G007210 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 4.2e-04
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 22 VHSQVRKIKEESDTTIDWRPGQPEIRPPTASF--RQISRSPLGISGRPISVGD 73
          +HSQV KIK+E +        QPE+R   +    RQ SRSPLG+  R ISVG+
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRRVLSEIKRRQRSRSPLGLGERSISVGN 67

The following BLAST results are available for this feature:

BLAST of CsGy1G007210 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G007210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64190.1	4.25e-45	100.00	hypothetical protein Csa_013611, partial [Cucumis sativus]	[more]
TYJ99047.1	1.09e-38	87.67	hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa]	[more]
KAG7012158.1	3.44e-25	70.27	hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6584306.1	2.61e-24	72.86	DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s...	[more]
RXH77210.1	4.82e-20	64.38	hypothetical protein DVH24_023484 [Malus domestica] >TQD72649.1 hypothetical pro...	[more]

BLAST of CsGy1G007210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ2	2.06e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1	[more]
A0A5D3BIV4	5.30e-39	87.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A498I238	2.33e-20	64.38	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1	[more]
A0A540KEP9	2.33e-20	64.38	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_041834 PE=4 SV=1	[more]
A0A540NFV0	4.71e-20	63.01	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004486 PE=4 SV=1	[more]

BLAST of CsGy1G007210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67920.1	4.2e-04	47.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..73
None	No IPR available	PANTHER	PTHR34780	OS08G0427800 PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR34780:SF5	OS08G0427800 PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007210.1	CsGy1G007210.1	mRNA