CsaV3_1G015040 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTGCTCTTCTTCCCTCCCACTCCCACTCCCACTTCGAGCAGGCCCTCACCTTTCTCCATTTATCTCTCTCGCTCAGATTCCCCTTTCTTCTTGCTTTCTCACTTTTTATCTCTCTTCTTCAACCTTCTTTCTTCCTTCCACTCCAATGGCTTCCGTTTCTGGAGATAAATTGTTTCCCGATCCGCCCACCTCCAACGACGCCGAGCTGCCTTCAATCTAATTTATTCCGCCGCCACGGTCACTCCCTCTCACATTCTCTTGCCTCTCCGAGCAACCAAAGTTTCTTATTCTGTTTTTTCTCTCGCTTCTCCGACCCTCCCAAGGTTTTATCTTTTCTTTTTGTTTGTATGTTTGTTTGTTCACTTTTTTGGGCTATGTTTTAGTTTATGACGCTTGTGTACCCTCTGTTTATAGTTTTGATTTGGTTCGAAGTGTTTGGAGTGAGGTGTAAGGCTGCTCTGGGCAAGATTACTTATTCCAAACACTTTTTCAGACTTCGAATAAGGTTCTAACCAAGTCCTAACTGTGATACCTTCATTTTATTAATCCAGGAGTTTTTTCTAATAATTTAGAAGTGCTTTATAATTCTACTTGATAGGTTTGTTTGTAGTGTAGCATGCTGCGTGTTTTTACGTACTTTTATGTTATTTTTGTGCTTTCGCCATCTGCCACCAATTTTGAGTTACTAGACAAGATTTTTGTGTATATATTATACGTGAATTAATGTATTTAAGTAAATTTCTTTGTTGGATGGGATTTGTTACAGGTAGTTAAAAGGTGATATGATGTATTAGTGATTCCGAGTGTTTTTACATTTCCTGGTTTGGCATAGGAAGGTTAATATCATACACAAATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGTTATATCCCTCACTCCCTCCTGTCTACGGCTCTACCATAGACTGTAGTTCTATACTTTTATTCTTTCTCTACTTTTTGGGAAAGGCTAAATTACAGAAAACGTCTGTCCAAACTGTGTACTTTGTTTTAACAATGCCTCTAAACTTTTTAAAGTTCCTTTTGTTGGATTTACTCTTTCCTCTTTCCTCTTCTGGTGTATTCTTGCTCATATGTTTCTCAATCAAAACTCAATTTCTTATTAAAATAGTTGCTTTAACACGTATTAACTTCACATTATAATATTTTAGAACTTATCATATAAAAAATAGCAAATAAAAGATTAAACTTGACATAGAAGATACATCAAATGGTAATTAATCTTTGATGTTTATGACCAGTCAATATTTTTTTTAAACGTCAGTGTTATAAAATCTTAATCTTTTTTCGGTATCAAGTGAATTTTAACATGACCGTCGTCACTTTTTAAATTTAACTATCTCCGTTGGACAATCTAGTGCTAACTGTATTCATACAAATTCTAATTATTTCCAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGTTTGTGCTCCTCTGTTTTCCTCCAAAACCATCTCTTACACATGTACTCAAAATGTGGGTTAATAAATGAGGCTCTTCAGATTTTTTTGGACACCAAGCAACGCAATGTCATTACTTGGAATACTATTCTTAATGGGTTGTTGGATTCTGGTCGTGTGAGGGACGCAGAGAAGATGTTTGATGAAATGCCCCTTAGAGATCCTGTTTCTTGGACTGCAATGATGTCGGGCTACTTCCGTAATGGTCAAGCTATGGATACTATTAAACTTTTTGTTTTGATGTTTCAGGATTCAGATTATGTTCCTGACTTGTTTTGTTTCTCTTGTGCAATGAAGGCTTGTAGTAGTGTTGGTTACATAAGGATTGCTCATCAGTTGCACGGTCTGTCAGAGAAATATGGCTTTGGAAACAACAAAGTCATCCAAAATTCTATCATCGATATGTATATTAAGTGCGATGCTATTTATGCTGCTGAGCAAGTGTTTCTAAGGATAGAAAAGCCAAGCTTATTTAGTTGGAATTGTATGATATATGGTTACTCTAAATTGCACGAGATGGGACGGGCAATTGACACTTTTAGACAAATGCCTGAACGAGATTCTGTCTCTTGGAACACAATTATTTCAGCATTTTCTCATCATGGTTTGCACATACAGAGCCTTGGTACGTTTGTTGAGATGTGGATTCAGGGTTGTCAACCAAATTCAATGACATATGCAAGCGTTCTTAGTGCATGTGCTAATATCTATGATTTTCAATGGGGTAAACATTTGCATGCTCGAATTGTCCGCGTCGAACCCTTTTTGGATGTTTTGGTAGGGAATGGATTGGTCGATATGTATGCAAAATGTGGACTTATTGATGCTTCAAAAAGGGTATTTAACACATTAAGGGAACACAATGTAGTAACATGGACGTCACTAATAAGTGGAATTGCACACTTTGGTAGTCAAGAAGAAGTTTATGACATTTTTTATCAAATGAGAAAAGATTGTGTTATTATGGATAATTTCATTCTTGCAACCATTCTTGGTGTATGTGAAGGGGAGACAAATATTTCAATTGGGGAGCAATTACATGGATTCACGGTGAAGACTGGGATGAATTCATCTGTGCCCGTAGGCAATGCTACTTTGTCAATGTATGCAAAATGTGGAGATTTTGAGAAGGCAAGTCTTGCTTTTGAAACGATGGCTGCTCACGATGTTATTTCATGGACAACAATGATCACTTCGTTCTCCCACAGTGGCAATGTAGAAAGGGCACGAGATTATTTCAATCGAATGCCGGAGCGTAATGTCATAAGTTGGAATGCAATGTTAGGTGCATATTGTCAGAACAGTTTTTGGGAAGAAGGTTTAAAATTGTACATTCTTATGCTAAGACAGGAAGTTAGGCCAGATTGGATCACCTTTGTTACCATGATCGGTGCTTGTTCTGAGTTAGCGATTTCAAAACTTGGAACACAAATTCTATCCCAAGCTGTTAAAGTAGGACTTGGTTCTGATGTTTCAGTTGTTAACAGTGCAATCACCTTATATTCTAGATGTGGTAGAATTGAAGAAGCGCAAAATCTTTTTGACTCAATACAAGAGAAAAACTTGATTTCTTGGAACTCAATAATGGGAGGATATGCTCAAAATGGTGAAGGCATGAAGGTGATTGAAATTTTTCAGAACATGTTGATGGCTGGTTGCAAACCTGATCATATCACGTATATAGCAATTCTCTCAGGTTGCAGCCACTCAGGTCTTGTAAAAGAAGCAAAATATCATTTTAACTCCATGACTAAAGATTTTGGCATCTCTGTAACTTTGGAGCATTTTGTGTGTATGGTAGATTTGTTTGGTCGAGCTGGGTTGCTAAAGCTGGCTTTGGATATGATTGATCAAATGCCATTTAAGCCGAATGCCAGTATATGGGGTGCTCTACTCAGTGCTTGTAGGATCCACCATGACACTGAAATGGCAGAGTTGGCAATGAAGAACTTGCTAGAATTGAACACTGAAAACTTTGAAAGTTACATTTTGCTTGCAAATACCTACTCTAGTTTTGGGAGGCTAGAATGCGTTTCTGAGGTGAGACAAGTGATGAAAGAGAAGAGAGTACAGAAAGATCCTGGCTGTAGTTGGATAGAGGTGTGCAACAGGGTCCATGTCTTTACTGCGAATGATACAAGTCATCCACAAGTCAAGGATATTTACAAGGCATTGGAAGACATTGTTAAGAAGATCAAAGATGATTATGGTTATTTTGATAGGTCGAGTTTTGTTGGGTATCGTAGTGAAGCTTGCTATTGCTTTTGGTTTGATCAACTTGCTTGATTGCATGCCAATCTATGTGATGAAAAACCTTCGAGTTTGCAATGATTGTCACCAGGTGATGAAATTGATTTCTCTTGTTGTCATGAGGAAATTTTTTATGCAAGATAGGTATCGATTTCATCACTTGGAGAAGGGAAGTTGCTCTTGTGGAGATTATTGGTAACTATAAAGTTAGAGTTTCGATTCTTTGATTTATGAAAGGAAAGATGCTTGGAAGAGAGATTGAAAAGAAATTGTGGATTGGGTTTGAAAGGGATAGACTTGTTGGAAAAGAATTCTTCTCTAAAGGTGGTAGTGGTAAACTATGTACTTAGCGTCGATTTTCCCCTCCGCATTCCATGGTCTTTTGTGTCCAACATTTGACTCAAAATTTAAATGGTACTTATAAGAATGACATTGTAGCTACTTTATTTTACAATGCATCGAAAACATATCGTGAATCAATGTTCTTAGAATTGTGGAGAAGTATTCTTGTATTCCCTAATGGTTTAGGAAAATATTTAAACGACGTTGGAATAACAGGATGCTCTCGTGTTCACTGCCCAGGAAGATAATATAACATGATGACAACAAATAAAGCACAGTCCATGAATTCTATACTGAAAGAACCTAGAGATTTGCTTATTGCTTATTGCTTCATTCCTTGAACATGTTCGAGCTTTGCTACAACGTTAGTTTTGGGAGCGTCGAGAAGAAAGCATTAGAGTGATGTCTACATTGACTAAATGGGAAAAGTTAGTTCTACAAAAGAAAAACAAGAACGAGCTTTGATAATGGTCAACCCAATTGACTGTTACCAATTCAATGTTAAAGATTTAGATAAAGAGGAGGTCGTAAATCTTCATACTCAAGAGTGCACTTGTAAGGAGTTTCAAGCTAAGCAACTACCATGCGCTCATGTCATTGCTGCAGCACGAGATCGCAATATAGATGTTTATAGTTTATGTGCTAACTATTACACTAATCCAGTCGGAAATCAGTCGGATTGGAAGACATGTGAAGAATTTGTACATATGACGCCTTACCTCCAAAAGTAGTCAAAAGTGCATTTTTATTTTGAAACTCCTACTGAAATTTTAATAGGTGCGAGATACATGAGAGATAAAACATTAAGGTGCGAGATAAAATATTAGGGCCTAATAAACTTGCATAGAACCATTCTAAACGCTTTAGAAATGGTAGCAATTTCATTTTGAAACTCTTACTGAAATTTTGGTAGGTGCGAGATAAAACATTAGGGTCTATTAAACTTGCTAAACATGCATAGAACCATCTAAACGGTTTAGGAAGAGTAGCATTTTCGTTTTGAAACTCTTAGTGAAATTTTTGTAGGTGCAAGATAAAACATTAAGACCTAATAAACTTGTTAAAGATGCATATAACCACTCTAAATGGTTTAGGAATGATAGGAATTTCACTTTGAAACTCCTAGTGAAATTTTGAAATGTGTGAGATAGGTGCAAGATGCATGTGAGATACACAAATTCATAAGAGGCTTACTAAATCAAATTGCTTGCACTTCTAAACCTATATTATAACACCTTTACTAAAATGATTAATAGTAGAAGGAAAGCCTATAGTTCTTATATTTAGGTTTAGGAACAAAACTCATTGAATCACTTGTTTTCACAGGACGAATCTTAAATAAACTGGTTGCACATGGGACGAATTAATATGGGGAACTGCTTGGTTGTACAAGATAACTAACCAATATAACAAAGATTACATTTTATTGAAACTATATCACTAAAAACATCAACAAAGTCAATAACAATAATACGACTTTTGATTATAATAACGTGATTAATTCTAAAAATGATAATGTCTTTTAACATTGTTCTACTAGTAGCTTTGCTGAATTTGGATGAAATACCAAATATGCTAGGATTAATGTCCTAAACTCCAAGGTGTATATATATATATATTTGTAGCATACGGAGGATGAAAATATGTGTGTCTGTAGGACATATGCATTTATTCTCTATAGGTATGTTACTTCCAATCATGAATTTCTTACTCACTAGAAGTTATGCATTTCTTCTCACAGTTTTACAAATAATTTTTATAAATCAAATGTGAACCAATCATGAGAAAATAAAACAATCATCATAACAAATTTCTTGCATTCCTTTAGTACATAATACTGTAGACATATGCATCAATTTGTTTGCTGAAAAATCTCAATGACATCAAAGAGAAGGGTCAGACAAATTTAATGGTATATCTAAAATGTGCTTAACAAAAATCTCATATCTCTACAGACAACTTAAACAACAATGATATATAAAAGAAAATAAAAACTCAGATTTTATTACTCACTTGACTTCAAAGAAGATGAATACGACATTGATAACGGAGAGAGGTGGAGAAGAAATGAAGAGGTCCGATGAAAACGACGCTGAAGTCGAAACTATTGGCTCGAAGAGTTCACTATAGTTTAAGTCGAAACTAAAAATAGAGAAGCGTTCACGGAAGTTGAAGTCGAAACTAAAAACAGAGAGGCGTGGAGAACAAATAGATCTAAGAGGCGTTCAATGAAGGCACCAAAGTTGAATGAAGTGGAAGTGAAGTTAAAGTGGAAACGGGAGAGTTCAGAAAGAACGAGATTTTTAGGTTAAAGAGAAGAAAAGGAGAGAAAATAAACAAAGGACAATTTGGACCTTTCACTCTCAATTTGTCCTAAAAATCTACTTTTTCAAAATCAATCTTAAAACTCATTTACTCCTTTCTTTTTTACCCTATTTTTGTCAATTTCCCAATCTTTTCTCCTTCCTTTGAATTCTTTCTCACTATCTGTTCATAATTTTTCCCTTCACAATTTTTGGTAAGTTTTTCTTTTTCATCTATATTTACCCTTCTCGCTTTCCTTCATCATTTCTCTCTGCTCACTCTACCATGTCCTCCATCTTCCAGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGACGAGCAAGAGAAAGAAACAAGACTAAATGGGAGCTGCATGCCTCATGCACATTCTTAAGACAAATATGTATTTCACATGTGGCTGACGTAATTAAGTGGAAAGTCCTTTTTTAACCTTGGACAAATTTTCACTAAGCCCCTAAAAGGAGTCATTTGTACAAATTGTCCAAGAAAACAACCTAAGATTACAGAAACTTTGCTGTGTTTTATTCTTTTGGATGAGCAAAATCACCTAGCATCAATCTCTC ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKSGKHNIKYVFFSLMRNERKQ* Homology
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: KAE8652814.1 (hypothetical protein Csa_022802 [Cucumis sativus]) HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_011654503.1 (pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativus] >XP_011654510.1 pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativus] >XP_031740501.1 pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativus]) HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45 Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_008461109.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_008461117.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_016903059.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo]) HSP 1 Score: 167.9 bits (424), Expect = 6.1e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_016903050.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903053.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903054.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903055.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903057.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903063.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo]) HSP 1 Score: 167.9 bits (424), Expect = 6.1e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_038894463.1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Benincasa hispida]) HSP 1 Score: 151.8 bits (382), Expect = 4.5e-33 Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A0A0LT54 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G166820 PE=3 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46 Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A1S3CEF4 (pentatricopeptide repeat-containing protein At2g13600-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=3 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A1S4E4B1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=3 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A1S3CDE3 (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=3 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29 Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A6J1I7S2 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471635 PE=3 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28 Identity = 70/103 (67.96%), Postives = 78/103 (75.73%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|