CsaV3_2G034300 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTATAAGTTGTCTGACACAGCTGGTGAAAGTAAAAAGGTTTGTATTTTATGGGAATTGTTTACTATTACTCTCATCATTATATGGCTGTTAAAAATTGTGGTTATTTGTTAGCAGTTTTTACCATTTTTAATTTTGATGTTAATTACACTTGTAGAATGTAGTTTTTTCCGTTTGGAATGACTGCTTGTACTTTGGATTAGTTATATACGTCAGTATAGTATCTTTAATTATGATAAATTTGCTTCTAAAAGATATATCAGATCTGATTCATTTTGATCTGTCAAAATTTTTGTGTTTTGTTTTTTTATTGCTGTTGCTGCTATCAAAGTATAGCTTTAGGCGAGTATAGAGAATGAAATAGAATTTCAGTTTCAACTTTGTTGTTTCATTTTGTTTGATTTTAGCAACAGAGAACGTAACGAAATACTTTGAAATTCATAACTAGATCCAAGGATTTTCAATCTTTTCAGATAGTTACTGTTTTCAATTGTTCTATTTTGGTGGCTGTGTTATCATTCATCTAACTTATTGTGCTTGTATTCTTTTCTTTCTTGTCAGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGGTAAATTTATGTCCCAAATGGCAGTTTTTCATTTCAAATATGTGTATTGTGTCCTGGGGGTGGGTATAAATTTCTTCTTTGTTGAAAACAACTGTCATGTATCTATTATTTATTTTTATCATTTTGAACGTGTAAAGCTGAAGCTCTACTTGGTTTTATCATACATATAGTTCATGTGTATGTCCTACTGAATTGACAAAAATGCTCATGTATTATTAGAATAGCATTGGCAAATATGCTCATAACTCTCTTGAGGTGTAGATGCCTGATAACTATATTTTTTGCAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGGTTGGGTGATTTCTTTCTATTTTAGACTCGGTATGCTTTGGCATTGATAGGAACAGTTTTTAAGGTCCAAAAGGGGGTGGGATATCTTGTGTATGCTTTCTTGTTATATTTGTTTGATTTCAACTTTTACATGGATCACACAATTATGATTTTCATGATTGCCCTTATATTTCATTACAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGTATCCGTGATGTTCCAATATGGCAATATCTTATTCTGTCTCTTGAAGTTCACTGAAGCCAATTATTGTTGATTTGTTGTGATTTAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS* Homology
BLAST of CsaV3_2G034300 vs. NCBI nr
Match: KAE8652266.1 (hypothetical protein Csa_022487 [Cucumis sativus]) HSP 1 Score: 463.8 bits (1192), Expect = 8.7e-127 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031736546.1 (coilin-like isoform X1 [Cucumis sativus] >XP_031736547.1 coilin-like isoform X1 [Cucumis sativus]) HSP 1 Score: 335.9 bits (860), Expect = 2.7e-88 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031741125.1 (coilin isoform X1 [Cucumis sativus] >KGN52354.2 hypothetical protein Csa_007787 [Cucumis sativus]) HSP 1 Score: 295.4 bits (755), Expect = 4.1e-76 Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031741126.1 (coilin isoform X2 [Cucumis sativus]) HSP 1 Score: 287.3 bits (734), Expect = 1.1e-73 Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_008446142.1 (PREDICTED: coilin isoform X1 [Cucumis melo]) HSP 1 Score: 285.4 bits (729), Expect = 4.2e-73 Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. ExPASy Swiss-Prot
Match: Q8RWK8 (Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13 Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A5A7ST29 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002610 PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73 Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A5D3CZQ0 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73 Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A1S3BF15 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73 Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A1S3BF70 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 5.6e-71 Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A6J1H0F7 (Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 7.8e-65 Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0
BLAST of CsaV3_2G034300 vs. TAIR 10
Match: AT1G13030.1 (sphere organelles protein-related ) HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14 Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|