CsaV3_2G034300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G034300
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCoilin
Locationchr2: 22718271 .. 22720061 (+)
RNA-Seq ExpressionCsaV3_2G034300
SyntenyCsaV3_2G034300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTATAAGTTGTCTGACACAGCTGGTGAAAGTAAAAAGGTTTGTATTTTATGGGAATTGTTTACTATTACTCTCATCATTATATGGCTGTTAAAAATTGTGGTTATTTGTTAGCAGTTTTTACCATTTTTAATTTTGATGTTAATTACACTTGTAGAATGTAGTTTTTTCCGTTTGGAATGACTGCTTGTACTTTGGATTAGTTATATACGTCAGTATAGTATCTTTAATTATGATAAATTTGCTTCTAAAAGATATATCAGATCTGATTCATTTTGATCTGTCAAAATTTTTGTGTTTTGTTTTTTTATTGCTGTTGCTGCTATCAAAGTATAGCTTTAGGCGAGTATAGAGAATGAAATAGAATTTCAGTTTCAACTTTGTTGTTTCATTTTGTTTGATTTTAGCAACAGAGAACGTAACGAAATACTTTGAAATTCATAACTAGATCCAAGGATTTTCAATCTTTTCAGATAGTTACTGTTTTCAATTGTTCTATTTTGGTGGCTGTGTTATCATTCATCTAACTTATTGTGCTTGTATTCTTTTCTTTCTTGTCAGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGGTAAATTTATGTCCCAAATGGCAGTTTTTCATTTCAAATATGTGTATTGTGTCCTGGGGGTGGGTATAAATTTCTTCTTTGTTGAAAACAACTGTCATGTATCTATTATTTATTTTTATCATTTTGAACGTGTAAAGCTGAAGCTCTACTTGGTTTTATCATACATATAGTTCATGTGTATGTCCTACTGAATTGACAAAAATGCTCATGTATTATTAGAATAGCATTGGCAAATATGCTCATAACTCTCTTGAGGTGTAGATGCCTGATAACTATATTTTTTGCAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGGTTGGGTGATTTCTTTCTATTTTAGACTCGGTATGCTTTGGCATTGATAGGAACAGTTTTTAAGGTCCAAAAGGGGGTGGGATATCTTGTGTATGCTTTCTTGTTATATTTGTTTGATTTCAACTTTTACATGGATCACACAATTATGATTTTCATGATTGCCCTTATATTTCATTACAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGTATCCGTGATGTTCCAATATGGCAATATCTTATTCTGTCTCTTGAAGTTCACTGAAGCCAATTATTGTTGATTTGTTGTGATTTAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA

mRNA sequence

ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA

Coding sequence (CDS)

ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA

Protein sequence

MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS*
Homology
BLAST of CsaV3_2G034300 vs. NCBI nr
Match: KAE8652266.1 (hypothetical protein Csa_022487 [Cucumis sativus])

HSP 1 Score: 463.8 bits (1192), Expect = 8.7e-127
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0

Query: 1   MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSP 60
           MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSP
Sbjct: 1   MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSP 60

Query: 61  NDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKW 120
           NDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKW
Sbjct: 61  NDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKW 120

Query: 121 GKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIA 180
           GKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIA
Sbjct: 121 GKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIA 180

Query: 181 SICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 226
           SICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS
Sbjct: 181 SICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 225

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031736546.1 (coilin-like isoform X1 [Cucumis sativus] >XP_031736547.1 coilin-like isoform X1 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 2.7e-88
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 66  MDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKS 125
           MDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKS
Sbjct: 1   MDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKS 60

Query: 126 PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFL 185
           PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFL
Sbjct: 61  PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFL 120

Query: 186 KCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 226
           KCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS
Sbjct: 121 KCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 160

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031741125.1 (coilin isoform X1 [Cucumis sativus] >KGN52354.2 hypothetical protein Csa_007787 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 4.1e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0

Query: 21  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHI 80
           VPSRSTRRKK KRRWLRERAQNEEQQQQLFETSLEQGPS NDDVDMDDDTVPVVVKPGHI
Sbjct: 273 VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHI 332

Query: 81  RFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEP 140
           RFEPVGKVVTDQAGQEKQNHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSNDCSSEP
Sbjct: 333 RFEPVGKVVTDQAGQEKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNDCSSEP 392

Query: 141 LQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           LQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 393 LQLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031741126.1 (coilin isoform X2 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-73
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0

Query: 21  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHI 80
           VPSRSTRRKK KRRWLRERAQNEE  QQLFETSLEQGPS NDDVDMDDDTVPVVVKPGHI
Sbjct: 273 VPSRSTRRKKAKRRWLRERAQNEE--QQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHI 332

Query: 81  RFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEP 140
           RFEPVGKVVTDQAGQEKQNHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSNDCSSEP
Sbjct: 333 RFEPVGKVVTDQAGQEKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNDCSSEP 392

Query: 141 LQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           LQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 393 LQLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 423

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_008446142.1 (PREDICTED: coilin isoform X1 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

BLAST of CsaV3_2G034300 vs. ExPASy Swiss-Prot
Match: Q8RWK8 (Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMD-------------- 81
           PSRS RRKK KR+WLRE+ + E  +++L +T L   PS    + +D              
Sbjct: 257 PSRSARRKKAKRQWLREKTKLE--KEELLQTQLVVAPSQKPVITIDHQATKEKHCETLEN 316

Query: 82  -----------DDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKK 141
                      D+ VPV V+PGHIRF+P+    TD+A  + +   L E + WNG   KKK
Sbjct: 317 QQAEEVSDGFGDEVVPVEVRPGHIRFKPLAG--TDEASLDSEP--LVENVLWNGNMTKKK 376

Query: 142 GQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG 171
           GQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Sbjct: 377 GQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCP---------IDYEQLVAYTG 418

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A5A7ST29 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002610 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 275 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 334

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 335 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 394

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 395 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 426

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A5D3CZQ0 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A1S3BF15 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A1S3BF70 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.6e-71
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEE  QQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEE--QQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 423

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A6J1H0F7 (Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.8e-65
Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KR+WLRERAQ+EEQQQQLFETS+ QGPS NDDVDMD+DTVPVVVKPGHIR
Sbjct: 263 PSRSTRRKKAKRQWLRERAQSEEQQQQLFETSIYQGPSHNDDVDMDEDTVPVVVKPGHIR 322

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKV  D AGQ+KQNHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+ EPL
Sbjct: 323 FEPVGKVAADPAGQQKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPL 382

Query: 142 QL-LSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QL  SETEQP TP PVVG I+FDEL P TGLPQ
Sbjct: 383 QLPTSETEQPTTPAPVVGPINFDELRPCTGLPQ 415

BLAST of CsaV3_2G034300 vs. TAIR 10
Match: AT1G13030.1 (sphere organelles protein-related )

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 0

Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMD-------------- 81
           PSRS RRKK KR+WLRE+ + E  +++L +T L   PS    + +D              
Sbjct: 257 PSRSARRKKAKRQWLREKTKLE--KEELLQTQLVVAPSQKPVITIDHQATKEKHCETLEN 316

Query: 82  -----------DDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKK 141
                      D+ VPV V+PGHIRF+P+    TD+A  + +   L E + WNG   KKK
Sbjct: 317 QQAEEVSDGFGDEVVPVEVRPGHIRFKPLAG--TDEASLDSEP--LVENVLWNGNMTKKK 376

Query: 142 GQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG 171
           GQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Sbjct: 377 GQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCP---------IDYEQLVAYTG 418

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652266.18.7e-127100.00hypothetical protein Csa_022487 [Cucumis sativus][more]
XP_031736546.12.7e-88100.00coilin-like isoform X1 [Cucumis sativus] >XP_031736547.1 coilin-like isoform X1 ... [more]
XP_031741125.14.1e-7696.08coilin isoform X1 [Cucumis sativus] >KGN52354.2 hypothetical protein Csa_007787 ... [more]
XP_031741126.11.1e-7394.77coilin isoform X2 [Cucumis sativus][more]
XP_008446142.14.2e-7392.76PREDICTED: coilin isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q8RWK81.8e-1335.03Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7ST292.0e-7392.76Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002610 PE=3 SV... [more]
A0A5D3CZQ02.0e-7392.76Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV... [more]
A0A1S3BF152.0e-7392.76Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1[more]
A0A1S3BF705.6e-7191.45Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1[more]
A0A6J1H0F77.8e-6584.31Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G13030.11.2e-1435.03sphere organelles protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..138
NoneNo IPR availablePANTHERPTHR15197:SF0COILINcoord: 20..174
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 20..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G034300.1CsaV3_2G034300.1mRNA