CsaV3_2G003080.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G003080.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 1438774 .. 1439172 (+)
Sequence length201
RNA-Seq ExpressionCsaV3_2G003080.1
SyntenyCsaV3_2G003080.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTGTGTGTAGATGAACCTGATATGGAGAAACAGGGCAGAAAAGGCAAGAAGACAGATGCAAAAGGAGGGAAAAAGAAATCCCAGTGATGAGAGACAGCACTGGATAGGCTGTAGCTTAATGAAGGGATATGGAATCTTTACAATATGCTGCTGCCTGTCAATAGAAAAAAGAAAAATAAATAAGTGAGAAATCATATCAGTCTATTCTGTCGCAGTCTTCATCTTATGCTAATGGTCACACAGAAAACTTCAATTATGTATTTATATTTTTTTCTTTTCAGACTTGTACGTACCTCACGGCTTATGACTCACTTGGCTGCTTGCCTGCTTCCTCCAGCAAAAGCTGCCATTGTTTTTCTTCCATCTGACTGCCTCTCACTTATGAAAGCTTGA

mRNA sequence

ATGAGAGTGTGTGTAGATGAACCTGATATGGAGAAACAGGGCAGAAAAGGCAAGAAGACAGATGCAAAAGGAGGGAAAAAGAAATCCCAACTTGTACGTACCTCACGGCTTATGACTCACTTGGCTGCTTGCCTGCTTCCTCCAGCAAAAGCTGCCATTGTTTTTCTTCCATCTGACTGCCTCTCACTTATGAAAGCTTGA

Coding sequence (CDS)

ATGAGAGTGTGTGTAGATGAACCTGATATGGAGAAACAGGGCAGAAAAGGCAAGAAGACAGATGCAAAAGGAGGGAAAAAGAAATCCCAACTTGTACGTACCTCACGGCTTATGACTCACTTGGCTGCTTGCCTGCTTCCTCCAGCAAAAGCTGCCATTGTTTTTCTTCCATCTGACTGCCTCTCACTTATGAAAGCTTGA

Protein sequence

MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDCLSLMKA*
Homology
[Close]
BLAST of CsaV3_2G003080.1 vs. NCBI nr
Match: KGN60699.1 (hypothetical protein Csa_019283 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 8.8e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDC 60
          MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDC
Sbjct: 1  MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDC 60

Query: 61 LSLMKA 67
          LSLMKA
Sbjct: 61 LSLMKA 66

[Close]
BLAST of CsaV3_2G003080.1 vs. ExPASy TrEMBL
Match: A0A0A0LI37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007430 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDC 60
          MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDC
Sbjct: 1  MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLPSDC 60

Query: 61 LSLMKA 67
          LSLMKA
Sbjct: 61 LSLMKA 66

The following BLAST results are available for this feature:
BLAST of CsaV3_2G003080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60699.18.8e-27100.00hypothetical protein Csa_019283 [Cucumis sativus][more]
BLAST of CsaV3_2G003080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G003080.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI374.3e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007430 PE=4 SV=1[more]
BLAST of CsaV3_2G003080.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G003080CsaV3_2G003080gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G003080.1.exon1CsaV3_2G003080.1.exon1exon
CsaV3_2G003080.1.exon2CsaV3_2G003080.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G003080.1.cds1CsaV3_2G003080.1.cds1CDS
CsaV3_2G003080.1.cds2CsaV3_2G003080.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G003080.1CsaV3_2G003080.1-proteinpolypeptide