CsaV3_1G006920 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAATTGAACTTTTGAGCACTATAAAAGCAGCTCATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGAAAAATAGACAACCTCTGGCCTTCTTCTTTTCTTCTTCTTCTTTTTCTTCTATAGGAAACAAATTATGTTTTGGGTTTTTAAAGCCATGAGAGAAACAGAGAGAGAGCTTGTTTTGAAGATACTGATTGACATCAATTTTGTTACATTTTCATCGTGATTTAGCAACCTCCAGTTTAGTACTTCTCTTTTATTATTGTTATTATCATTATAGTGTTGATACAAATAGTTAGACGTTCTAACATGATTTGCTTTCTTTACCATGCAAGGCTTAGGTTTTATATAGATGCCTTACATATCTTTATATCTTCCAAATATCACAGTCTTTAACAAGTATCCGT ATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA ATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA MDNENFPKKQQLNWVSSLYSLKPISIVKMARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA* Homology
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus]) HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25 Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17 Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba]) HSP 1 Score: 91.3 bits (225), Expect = 5.3e-15 Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAF3438595.1 (hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis]) HSP 1 Score: 88.2 bits (217), Expect = 4.5e-14 Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15 Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14 Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14 Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14 Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05 Identity = 23/54 (42.59%), Postives = 30/54 (55.56%), Query Frame = 0
BLAST of CsaV3_1G006920 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein ) HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05 Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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