CsaV3_3G010150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G010150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr3: 8171453 .. 8172010 (-)
RNA-Seq ExpressionCsaV3_3G010150
SyntenyCsaV3_3G010150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTTACAGGCTTCATCCACCATAAGCCATCATTAAACAAGCTCATTGCCCATGTCCTCTCAATGGGCTCGCTTGGAGTTGGCTATGCTTATTCAGTTTTTGCTCACACTAGAGAGTTAGATGTACTTACTTGGAATTCCATGTTGAGAGCCTTTGTGAATTCCAATATGCCGAGAAGGGCGCTCCAAAGTTATACTGAGATGCTCGAACGGTCGAGGAATGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGTGCACTTTTATTGGAATTCAAAGTTGGGAAGGTTCTACACGGGCAAGTTGTCAAGTATATGCTTCATTCGGACCTGTACATAGAAACCACATTGTTAAATATGTACGCAGCCTGTGGAGATTTAAAATCTGCGAGGTTCCTGTTTGAGAGAATGGGTCATAGAAATAAAGTGGTGTGGACTTCGATGATTAGTGGTTATATGAAAAACCATTGTCCTAATGAGGCTTTGCTATTGTATAAGAAGATGGAGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCGACCCTT

mRNA sequence

ATGGTAGTTACAGGCTTCATCCACCATAAGCCATCATTAAACAAGCTCATTGCCCATGTCCTCTCAATGGGCTCGCTTGGAGTTGGCTATGCTTATTCAGTTTTTGCTCACACTAGAGAGTTAGATGTACTTACTTGGAATTCCATGTTGAGAGCCTTTGTGAATTCCAATATGCCGAGAAGGGCGCTCCAAAGTTATACTGAGATGCTCGAACGGTCGAGGAATGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGTGCACTTTTATTGGAATTCAAAGTTGGGAAGGTTCTACACGGGCAAGTTGTCAAGTATATGCTTCATTCGGACCTGTACATAGAAACCACATTGTTAAATATGTACGCAGCCTGTGGAGATTTAAAATCTGCGAGGTTCCTGTTTGAGAGAATGGGTCATAGAAATAAAGTGGTGTGGACTTCGATGATTAGTGGTTATATGAAAAACCATTGTCCTAATGAGGCTTTGCTATTGTATAAGAAGATGGAGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCGACCCTT

Coding sequence (CDS)

ATGGTAGTTACAGGCTTCATCCACCATAAGCCATCATTAAACAAGCTCATTGCCCATGTCCTCTCAATGGGCTCGCTTGGAGTTGGCTATGCTTATTCAGTTTTTGCTCACACTAGAGAGTTAGATGTACTTACTTGGAATTCCATGTTGAGAGCCTTTGTGAATTCCAATATGCCGAGAAGGGCGCTCCAAAGTTATACTGAGATGCTCGAACGGTCGAGGAATGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGTGCACTTTTATTGGAATTCAAAGTTGGGAAGGTTCTACACGGGCAAGTTGTCAAGTATATGCTTCATTCGGACCTGTACATAGAAACCACATTGTTAAATATGTACGCAGCCTGTGGAGATTTAAAATCTGCGAGGTTCCTGTTTGAGAGAATGGGTCATAGAAATAAAGTGGTGTGGACTTCGATGATTAGTGGTTATATGAAAAACCATTGTCCTAATGAGGCTTTGCTATTGTATAAGAAGATGGAGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCGACCCTT

Protein sequence

MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL
Homology
BLAST of CsaV3_3G010150 vs. NCBI nr
Match: XP_031738958.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 6.1e-102
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. NCBI nr
Match: KAE8650280.1 (hypothetical protein Csa_010725, partial [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 6.1e-102
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. NCBI nr
Match: XP_008438231.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucumis melo] >KAA0049078.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17485.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 175/186 (94.09%), Postives = 181/186 (97.31%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIA VLSMGSLGVGYAYSVFAHTRELD+LTWN+MLR FVNSNMPR
Sbjct: 1   MVVTGFIHHKPSLNKLIALVLSMGSLGVGYAYSVFAHTRELDILTWNTMLRGFVNSNMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSYTEMLE+SRNVPDRFTFPSLLKGCAL LEFKVGK+LHGQVVKYMLHSDLYIETTL
Sbjct: 61  RALQSYTEMLEQSRNVPDRFTFPSLLKGCALSLEFKVGKILHGQVVKYMLHSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDL+SAR LFERMGHRNKVVWTSMISGY KNHCPNEALLLY+KMEEDGFSPDE
Sbjct: 121 LNMYAACGDLRSARLLFERMGHRNKVVWTSMISGYTKNHCPNEALLLYEKMEEDGFSPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. NCBI nr
Match: XP_038906564.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 354.0 bits (907), Expect = 8.0e-94
Identity = 169/186 (90.86%), Postives = 179/186 (96.24%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIAH+LSMGSLGV YAYSVFAHT+ELD+LTWN+MLR FVNSNMPR
Sbjct: 1   MVVTGFIHHKPSLNKLIAHILSMGSLGVVYAYSVFAHTQELDILTWNTMLRGFVNSNMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSY EMLERSRN+PDRFTFPSLLKGCALLLEFKVGK+LHGQV+KYML SDLYIETTL
Sbjct: 61  RALQSYIEMLERSRNIPDRFTFPSLLKGCALLLEFKVGKILHGQVIKYMLDSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDL SARFLFE+MGHRNKVVWTSMISGY KN+CPNEALLLY+KMEEDGF PDE
Sbjct: 121 LNMYAACGDLNSARFLFEKMGHRNKVVWTSMISGYTKNNCPNEALLLYEKMEEDGFCPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. NCBI nr
Match: XP_023528412.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 2.7e-89
Identity = 163/186 (87.63%), Postives = 174/186 (93.55%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHH PSLNKLIAHVLSMGSLGV YAYSVF HTRELD+LTWN+MLR FVNS+MPR
Sbjct: 53  MVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPR 112

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RAL+SY EML+ SR VPDRFTFPSLLKGCAL LEFKVGKVLHGQ+VKY L SDLYIETTL
Sbjct: 113 RALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTL 172

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYA+CGDL SARFLFE+MGHRNKVVWTSMISGYM+NHCPNEAL+LY+KM EDGFSPDE
Sbjct: 173 LNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDE 232

Query: 181 VTMATL 187
           VTMATL
Sbjct: 233 VTMATL 238

BLAST of CsaV3_3G010150 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-25
Identity = 59/183 (32.24%), Postives = 103/183 (56.28%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           M+ TG      S +KL A         + YA  VF    + +   WN+++RA+ +   P 
Sbjct: 53  MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
            ++ ++ +M+  S+  P+++TFP L+K  A +    +G+ LHG  VK  + SD+++  +L
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           ++ Y +CGDL SA  +F  +  ++ V W SMI+G+++   P++AL L+KKME +      
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASH 232

Query: 181 VTM 184
           VTM
Sbjct: 233 VTM 235

BLAST of CsaV3_3G010150 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 6.3e-25
Identity = 65/187 (34.76%), Postives = 105/187 (56.15%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSM-GSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMP 60
           M+ +  I +   L++LI    +   ++ + YA SVF       V  WNSM+R + NS  P
Sbjct: 29  MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88

Query: 61  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 120
            +AL  Y EML +  + PD FTFP +LK C+ L + + G  +HG VVK     ++Y+ T 
Sbjct: 89  DKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTC 148

Query: 121 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 180
           LL+MY  CG++     +FE +   N V W S+ISG++ N+  ++A+  +++M+ +G   +
Sbjct: 149 LLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKAN 208

Query: 181 EVTMATL 187
           E  M  L
Sbjct: 209 ETIMVDL 214

BLAST of CsaV3_3G010150 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-24
Identity = 60/187 (32.09%), Postives = 102/187 (54.55%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           ++VTG+   +  L KLI   L+  +  + Y + +F      D   +NS++++     +P 
Sbjct: 32  LIVTGYGRSRSLLTKLI--TLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPL 91

Query: 61  RALQSYTEMLERSRNV-PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 120
             +  Y  ML  S NV P  +TF S++K CA L   ++GK +H   V      D Y++  
Sbjct: 92  HCVAYYRRML--SSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAA 151

Query: 121 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 180
           L+  Y+ CGD++ AR +F+RM  ++ V W S++SG+ +N   +EA+ ++ +M E GF PD
Sbjct: 152 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 211

Query: 181 EVTMATL 187
             T  +L
Sbjct: 212 SATFVSL 214

BLAST of CsaV3_3G010150 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 57/159 (35.85%), Postives = 93/159 (58.49%), Query Frame = 0

Query: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
           + YA  +F    E D++ +NSM R +     P      + E+LE    +PD +TFPSLLK
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE-DGILPDNYTFPSLLK 138

Query: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147
            CA+    + G+ LH   +K  L  ++Y+  TL+NMY  C D+ SAR +F+R+     V 
Sbjct: 139 ACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVC 198

Query: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 187
           + +MI+GY + + PNEAL L+++M+     P+E+T+ ++
Sbjct: 199 YNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSV 236

BLAST of CsaV3_3G010150 vs. ExPASy Swiss-Prot
Match: O64705 (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 0

Query: 7   IHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSY 66
           +H     N LI   + +G     Y+  +F+ T E +  ++N M+R   N+     A  S 
Sbjct: 62  LHSVEKPNFLIPKAVELGDF--NYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSL 121

Query: 67  TEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA 126
              ++ S   PD+FT+  +   CA L E  VG+ +H  + K  L  D++I  +L+ MYA 
Sbjct: 122 YRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAK 181

Query: 127 CGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 186
           CG +  AR LF+ +  R+ V W SMISGY +     +A+ L++KMEE+GF PDE T+ ++
Sbjct: 182 CGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSM 239

BLAST of CsaV3_3G010150 vs. ExPASy TrEMBL
Match: A0A0A0L4G7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G127110 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 2.9e-102
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR
Sbjct: 75  MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 134

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL
Sbjct: 135 RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 194

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE
Sbjct: 195 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 254

Query: 181 VTMATL 187
           VTMATL
Sbjct: 255 VTMATL 260

BLAST of CsaV3_3G010150 vs. ExPASy TrEMBL
Match: A0A5A7U1H5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003500 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 175/186 (94.09%), Postives = 181/186 (97.31%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIA VLSMGSLGVGYAYSVFAHTRELD+LTWN+MLR FVNSNMPR
Sbjct: 1   MVVTGFIHHKPSLNKLIALVLSMGSLGVGYAYSVFAHTRELDILTWNTMLRGFVNSNMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSYTEMLE+SRNVPDRFTFPSLLKGCAL LEFKVGK+LHGQVVKYMLHSDLYIETTL
Sbjct: 61  RALQSYTEMLEQSRNVPDRFTFPSLLKGCALSLEFKVGKILHGQVVKYMLHSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDL+SAR LFERMGHRNKVVWTSMISGY KNHCPNEALLLY+KMEEDGFSPDE
Sbjct: 121 LNMYAACGDLRSARLLFERMGHRNKVVWTSMISGYTKNHCPNEALLLYEKMEEDGFSPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. ExPASy TrEMBL
Match: A0A1S3AVZ9 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103483399 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 175/186 (94.09%), Postives = 181/186 (97.31%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHHKPSLNKLIA VLSMGSLGVGYAYSVFAHTRELD+LTWN+MLR FVNSNMPR
Sbjct: 1   MVVTGFIHHKPSLNKLIALVLSMGSLGVGYAYSVFAHTRELDILTWNTMLRGFVNSNMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RALQSYTEMLE+SRNVPDRFTFPSLLKGCAL LEFKVGK+LHGQVVKYMLHSDLYIETTL
Sbjct: 61  RALQSYTEMLEQSRNVPDRFTFPSLLKGCALSLEFKVGKILHGQVVKYMLHSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYAACGDL+SAR LFERMGHRNKVVWTSMISGY KNHCPNEALLLY+KMEEDGFSPDE
Sbjct: 121 LNMYAACGDLRSARLLFERMGHRNKVVWTSMISGYTKNHCPNEALLLYEKMEEDGFSPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. ExPASy TrEMBL
Match: A0A6J1E8Q8 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431819 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.2e-88
Identity = 160/186 (86.02%), Postives = 172/186 (92.47%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHH PSLNKLIAHVLSMGSLGV YAYSVF HTRELD+LTWN+MLR FVNS+MPR
Sbjct: 1   MVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RAL+SY EML+ SR VPDRFTFPSLLKGCAL LEFKVGKVLHGQ+VKY L SDLYIETTL
Sbjct: 61  RALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYA+CGDL SARFLFE+MGHRNKVVWTSMISGY +NHCPNEAL++Y+KM EDGFSPDE
Sbjct: 121 LNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYTRNHCPNEALVMYEKMVEDGFSPDE 180

Query: 181 VTMATL 187
           VTM TL
Sbjct: 181 VTMVTL 186

BLAST of CsaV3_3G010150 vs. ExPASy TrEMBL
Match: A0A6J1IWP4 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479271 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 158/186 (84.95%), Postives = 170/186 (91.40%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           MVVTGFIHH PSLNKLIAHVLSMGSLGV YAYSVF HT ELD+LTWN+MLR FVNS+MPR
Sbjct: 1   MVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTLELDILTWNTMLRGFVNSDMPR 60

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
           RAL+SY EML+ SR VPDRFTFPSLLKGCAL LEFKVGKVLHGQ+VK  L SDLYIETTL
Sbjct: 61  RALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKNRLGSDLYIETTL 120

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           LNMYA+CGDL SARFLFE+MGHRNKVVWTSMISGY +NHCP EAL++Y+KM EDGFSPDE
Sbjct: 121 LNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYTRNHCPKEALVMYEKMVEDGFSPDE 180

Query: 181 VTMATL 187
           VTMATL
Sbjct: 181 VTMATL 186

BLAST of CsaV3_3G010150 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-26
Identity = 59/183 (32.24%), Postives = 103/183 (56.28%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           M+ TG      S +KL A         + YA  VF    + +   WN+++RA+ +   P 
Sbjct: 53  MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112

Query: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
            ++ ++ +M+  S+  P+++TFP L+K  A +    +G+ LHG  VK  + SD+++  +L
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172

Query: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
           ++ Y +CGDL SA  +F  +  ++ V W SMI+G+++   P++AL L+KKME +      
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASH 232

Query: 181 VTM 184
           VTM
Sbjct: 233 VTM 235

BLAST of CsaV3_3G010150 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-26
Identity = 65/187 (34.76%), Postives = 105/187 (56.15%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSM-GSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMP 60
           M+ +  I +   L++LI    +   ++ + YA SVF       V  WNSM+R + NS  P
Sbjct: 29  MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88

Query: 61  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 120
            +AL  Y EML +  + PD FTFP +LK C+ L + + G  +HG VVK     ++Y+ T 
Sbjct: 89  DKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTC 148

Query: 121 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 180
           LL+MY  CG++     +FE +   N V W S+ISG++ N+  ++A+  +++M+ +G   +
Sbjct: 149 LLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKAN 208

Query: 181 EVTMATL 187
           E  M  L
Sbjct: 209 ETIMVDL 214

BLAST of CsaV3_3G010150 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 60/187 (32.09%), Postives = 102/187 (54.55%), Query Frame = 0

Query: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
           ++VTG+   +  L KLI   L+  +  + Y + +F      D   +NS++++     +P 
Sbjct: 32  LIVTGYGRSRSLLTKLI--TLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPL 91

Query: 61  RALQSYTEMLERSRNV-PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 120
             +  Y  ML  S NV P  +TF S++K CA L   ++GK +H   V      D Y++  
Sbjct: 92  HCVAYYRRML--SSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAA 151

Query: 121 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 180
           L+  Y+ CGD++ AR +F+RM  ++ V W S++SG+ +N   +EA+ ++ +M E GF PD
Sbjct: 152 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 211

Query: 181 EVTMATL 187
             T  +L
Sbjct: 212 SATFVSL 214

BLAST of CsaV3_3G010150 vs. TAIR 10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 0

Query: 7   IHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSY 66
           +H     N LI   + +G     Y+  +F+ T E +  ++N M+R   N+     A  S 
Sbjct: 62  LHSVEKPNFLIPKAVELGDF--NYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSL 121

Query: 67  TEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA 126
              ++ S   PD+FT+  +   CA L E  VG+ +H  + K  L  D++I  +L+ MYA 
Sbjct: 122 YRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAK 181

Query: 127 CGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 186
           CG +  AR LF+ +  R+ V W SMISGY +     +A+ L++KMEE+GF PDE T+ ++
Sbjct: 182 CGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSM 239

BLAST of CsaV3_3G010150 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 57/159 (35.85%), Postives = 93/159 (58.49%), Query Frame = 0

Query: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
           + YA  +F    E D++ +NSM R +     P      + E+LE    +PD +TFPSLLK
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE-DGILPDNYTFPSLLK 138

Query: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147
            CA+    + G+ LH   +K  L  ++Y+  TL+NMY  C D+ SAR +F+R+     V 
Sbjct: 139 ACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVC 198

Query: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 187
           + +MI+GY + + PNEAL L+++M+     P+E+T+ ++
Sbjct: 199 YNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSV 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031738958.16.1e-102100.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sa... [more]
KAE8650280.16.1e-102100.00hypothetical protein Csa_010725, partial [Cucumis sativus][more]
XP_008438231.22.9e-9694.09PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-... [more]
XP_038906564.18.0e-9490.86pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Benin... [more]
XP_023528412.12.7e-8987.63pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucur... [more]
Match NameE-valueIdentityDescription
O823801.6e-2532.24Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9MA956.3e-2534.76Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
P930112.4e-2432.09Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
Q8LK931.5e-2335.85Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop... [more]
O647051.5e-2334.44Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A0A0L4G72.9e-102100.00DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G1271... [more]
A0A5A7U1H51.4e-9694.09Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3AVZ91.4e-9694.09pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc... [more]
A0A6J1E8Q83.2e-8886.02pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc... [more]
A0A6J1IWP45.0e-8684.95pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc... [more]
Match NameE-valueIdentityDescription
AT2G29760.11.2e-2632.24Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G05240.14.4e-2634.76mitochondrial editing factor 19 [more]
AT2G33760.11.7e-2532.09Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G34400.11.1e-2434.44Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G02980.11.1e-2435.85Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 118..141
e-value: 0.016
score: 15.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 42..90
e-value: 2.2E-9
score: 37.4
coord: 144..185
e-value: 7.7E-10
score: 38.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 45..78
e-value: 3.5E-4
score: 18.6
coord: 146..180
e-value: 7.0E-10
score: 36.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 42..76
score: 9.689847
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..178
score: 11.860184
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 99..186
e-value: 4.4E-20
score: 73.8
coord: 4..98
e-value: 2.5E-10
score: 42.0
NoneNo IPR availablePANTHERPTHR47928:SF81OS01G0754700 PROTEINcoord: 25..138
coord: 73..184
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 25..138
coord: 73..184

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G010150.1CsaV3_3G010150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding