Tan0022485.1 (mRNA) Snake gourd v1

Overview
NameTan0022485.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 15373697 .. 15380041 (+)
Sequence length318
RNA-Seq ExpressionTan0022485.1
SyntenyTan0022485.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATAGTAATGTTGATGTAAGGGATAGGGATAAAGAGAAATACGAAGAACATTGTAGGAGAGAAGACGATTCTGAGGTATATTTCTGATGTACTAATATTTTATATGTTATCTATGGTCTAATATATGATGTAAGTAAATTTATAGTTGGGTAATTATTGTTCATAAATTTGTGCAGGAGGATCATGTTGTTTTGTCTGATATTCTTAAGAAAAAAGCAAAGGGAAAGAGAAAGATGGTAAAAGAGACGACTAAGGTATATTGTGTATATATAAATATATATATGAATGTATGTGTAACGACCCTAATTTTTTTGACACAAATCCAACTAGGGACGTCACTAGATAGTACCCTTTTCGCCGAAATTTCGGCAGCATAACGGCGTTATCCGGATGAATCCAAAATTTTTACTTAACCTGTTTTAAGCAAAAAAAAAACACTTCTAAGAACTTTTTCAATGCCCGACCTCCTCCAGACTACAACAAAACAGCCCGGGCTCCAGCAAACCACACAACAGAGGCAACAGAAGCACTAAACAAAAGTTTAACGAGCATGCTGAACAAAGAAACTAAATGAATAAACATCATGGTCAACAACACAAATAGTTCAGAAATCCAACGAGCAATAAACAAAAGTCAGAGTACAACTCATAAATACAAAGAACTTCCTAAGTTCCAACATAAAGGTTCCTCTAAGACAAGAGTGGTCTCATAGCCTCGTCATGTCGGCACCGTCGCTCTGCAGCTCACTGTTTGCTCTTACCTGCAACCAAAGACATTAAAGTAGACGGGTGAGTATAAGAATACTCAGTAAGTAGCCCACTCACGTCCAAGCTACAAATTTCACATGTGCATACACAGAGGAAAAATAGGTTCGCAACCAAAGCATCTTAGGGACTCGAGACTAGACGCTCACGTGTCTACCTCACCCCGAGACTCACCGACGATCCAGAAACCTAGGCGACTATAGACGGGGACGCGCCCCAACGCGAAAGAGTAATCACTCTAACGCCCACATAGAACGCAATAGAGCCTCGACTCTAAAGCCCACACAGATCGCACAAGGGCGACCCACCCAAGTGCCCACACAGAGATCACATAGGGTGCTCGACCCCATGTCCACACAGCTCGTAAAAGGGCGCACTCGACCCTAATGCCCACAGGCTCGCAAACGGGCGCACTCGACCCTAATGCCCACACAGCTCGCAAAAGGGCGCACTCAACCCTAATGCCCACACAGAGATGCTAGCCTAGGAGGTCAAGCTCTAACGTTTCTCCTAGGCTTCCCCTAAACCCTTCCAAAGTCGTCCTGAGACCGAGTCCCTAACCAACAGCCTAACCGACCAACCACACATCCCGCCAACCAATCTTTTGCCCCAACCACGGAGCTAACCAGTCACCCCTGTCCTAGACCATCACCAGACTTATCCTACTCAGTTCTAGGGGTCAATCACACAACGCACATTATTACACAAGCTCGAGTCTCACTTAGCAGCCAACCACAAGCAACACAATTGCGAGATGCAGGAAAGTCAAACCCAACACACATAAATAAGTGCTCGATTCACATAGCAAGAACACGATATCCAGAGTCATACACCAAACATTATGCTAACAGCCATGCAACAGTTGTAAAATCAACCACAACAATCCTGTGCTCAAACTCGTTCGCTTACGGGTTTGATGCTTAAACCAAACAACTACTTACCTCGAATAACGTGTACAAAGGTCCTTGCTCTTGTTTAGCAGCCTAAAGCACCCACGATTACAAGCTGAAACGGTCCCCTGCTAGTTCTTAGCCACAAGCTTTCCTCCAACGACCTACATTTTCGCCAATGGATCTGATCCTGTTCACAAAAACTAACACCATCAGTGAAACGGAGAGGAAAGAGAGAGAGAGAGACGGAGAGACAAGAGCTGAAGGGGAAGGGAAACGACAAGGAGGGAAAGAGAGAGAGAGATCGAGTGAGATGAAGAGCAACACAGATCAGGAGAGGAAGAGAGAGGGGGAAAGTCGAACGGAAAGGGAGAGAGAAAGCCGAGAGTGAGAGAGGGGAGGTGGCCAGACGGAGAGGGGAGAACGGATCGAGGGACAGAGAGGGAAGAGATCAAGAGACAGAGAGGGAGAGGCCAAGAGGAAGAGCCGAACGAGGAAGAGGGAGAGGGGCAGAGTGACAGACGACGACGGTGGGTCGAGCGAGAAGACGCGAAGCCGCCCGAGAGAGAGAGAGAGAGAGAGGGCGAGAATCAATCGAGGAGGAGGGAGAGGATCGGAGAGGAAGAGGCCGCCGGCACGCCGGCCGCCGGCTCGACCTCGTCAAACGGGGGTGGCGCCCCCCTTGCGCAAGGAAGAAAACAATAAGAGGGAAGGTCCAAAGTTTACCTCGTTTTCCTTCTCCAAAGACGTTTGATGAGAAACCCAAGGCTGCCAACCCAATTTAAAGCGAGATTCAATACGCTTGGGTCCTTGAACTTACCGGGCGTCACATCCTCCCCACCTTAAGAACTTTCGTCCTCGAAAGTGGCTAATTCCCAAACAGCTCCGGGTAGTTCGTTCTCATCTCGTCCTCACGCTCCCAAGTAGTTTATTTGAGCTGTTGGTTTTGCCACAAGACCTTGAAAAGGTCGATTTCTCGGTTCCTCAACACCTTTTTCTCTCGAGCCAAGATTTTCACTGGTTTCTCCTCGTAGCTCAAGTCCTTATCGACCTGCAGTGGCTTGTAATCAATGACGTGGGATGCATCTGGCACGTAGCCTCGCAGCATCGACACGTGAAACACGTCGTGTACGGCTGCTAGCGACGGTGGTAAGGCTAAACGATACGCCACTGGGGCAATACGCTCCAAGATCTCGAATGGCCCGATGAACCTAGGGCTCAATTTCCCTTTCTTGCCAAATCTCAACACACCTTTCATCGGTGCAACTTTCAGGAACGCATACTCTCCAACTGCGAATTCCAAGTCTCTGCGCCTCACATCGGCATAACTCTTTTGTCTACTCTGAGCCGTTAACATTCTCGCTCTGATCTTCTGCACAGCCTCATTTGTAACTTGGACCAGCTCGGGTCCCAATAGCTTACGCTCACCGACCTCTCCCCAATACACTGGGGACCTGCACCTCTTCCCATACAAGGCCTCAAAGGGCGCCATCCCGATCGTTGCCTGATAACTGTTGGTATAGGCAAACTCCATCAAGTGAAGGTGTGTATCCCAACTCCCTGCGAAATCTAGGGCACAAGCTTGGAGCATGTCTTCCAAGATCTTGTTTAACCTCTCACCGACTGCCATGCATGCGAGGGTGAAATGCTATCTTTGGCGCACTCTCAGCTCCCAAAGCCTTCTGGAAGCTCATCCAGAAGTTGGATGTGAAACGAGGGTCCCTGTCCGAGACAATCTTCACTGGGACTCCGTGTAGCCTAACAATTTCCTCCATGAACAGCTTCGCCCACTTCTCCACCGTATAAGTCGGTTTTCAGGAAGGAAATGTGCCGACTTTGTCAGCCTATCCACGATCACCCTAACCACCGTGAATCCTCTAACGGTTCGGGGTAGACCTGAAATGAAATCCATCGAGACCTCTTCCCATTTCCACTGAGGTACCTCTAAGGGTTGCAATAGCCCTGCCGACTTCTGCCTCGGGGCTTTAACTTGTTGGCAGACTAAACATCTGCTACATCTTTCTTCATTCCACTCCACCAGTAGAACTGCTTCAGGTCCTGATACATTTTAGTACTGCCAGGATGCACTGAGAAAGGGGAACTGTGAGCCTCGGCTAGAACTTCTTCCTTGAGGTCACTTACATCTGGAACGCATAACCGTCCTTTGAACAACAAGCCCCCATCTGATGACACTGTAAACTCACTATCTTGGCCCGACTTGGTTGTTTCCACCAATCCACAAGACCAGGGTTCCCCTGTTGGGAGTCAAGAACTCGTTGTCTCAGAGTTGGTTGCACTGACAACTGGTTAAACTGAGCCATGACCTGCCCTACCATCACGACAATACCGACACGCTCCATATCGACTCGCAAATGGAACTCCTTCGTGACTAAGGCCGACGTGTGAGCTACCTTTCTACTAAGGGCATCGACAACCACATTTGCCTTACCCGAGTGATACAAGATCTCAATCTCGCAATCCTTCACCAACTCCAGCCACCTACGTTGTCTCATGTTCAACTCTTTCTGCGTAAACAAGTATTTCAAGCTCTTGTGGTCTGTATACATTTGGATTTTCTCACCATACAAATAGTGTCTCCAGATTTTCAAGGCGAAGACCACTGCCGCTAACTCCAAGTCATGGGTCGGGTAATTTTTCTCGTAGTCTTTCAACTGTCGGGAGGCATAGGCAATTACCCTCCCATTTTGCATCAAAACACAACCTAAGCCCTTCTTGGAAGCATCACTGCAAACCACGAAGTTTCCTGATCCATCTGGCACTGTAAGCACTGGAGTTGAGATCAACCTCTACTTCAAATCCTGAAAACTTGCCTCGCACGCCTCACTCCACACGAAGGCATTCCCCTTCCGTGTTAACTGAGTAAGGGATGTTGCGATCTTGGAAAAGTCTTTCACAAATAGTCGGTAATAACCGGCCAACCCTAAGAAACTGCGAACTTCAGTGACGGTTTTGGGTCGGGTCAGTTTGAAACTGCTTCCACCTTCGCCGGATCTACAGAGACACCCTTCTTAGATACTACATGCCCTAAAAAGGACACCTGCGACAACCAAAACTCGCACTTGGAGAACTTGGTGTACATGATTCTCTCTCAAAGTGGTCAAGACTTTCCTCAGGTGGTTCTCGTGCTCTTCGCTCGACTTTGAGTAAACAAGGACGTCGTCTATAAATACAATTACGAAGGTGTCCAGAAACTCCTTGAACACCCTGTTCATCAGGCCCATGATCACGGCCGGAGCATTTGTCAAACCGAACGACATCACGGTAAACTCGTAATGTCCATACCTGGATATGAAGGCTGTCTTTGGGATATCTTCCTCTCTTATTCGCAGCTGATGATAGCCCGAGCGCAAATCAATCTTAGAGAACACAGTGGCTCCCTGCAGTTGGTCAAACAGATCATCAATTCTAGGGAGCGGGTACTTGTTCTTTATCATCACTTTATTTAACTCTCGATAGTCAATGCAAAGGCGCATCGACCCATCCTTCTTTTTCACAAAAAGTATCACAAGCACCTCACGGAGAGAGACACTAGGGCGAATGAAGCCCTTGTCTAACAACTCCTGCAATTGAGTCTTGAGCTCCTTTAACTCGGCTGGGGCCATTCTGTATGGAGCTTTCGATAATGGTGCAGTGCCTGACTCCAACTTAATACTGAAATCCACTTCCCTGGTCGGAGGTAAACCTGGAAAATCCTCAGGGAATACATCAACTCTCCCGACTCATCGGGCGGACGACACGCTCTCTTTCTCACTTCTCAAGTCCGTCACACTTGCCAAGAAGGCCCGAGCCCATTGACCAACCAACTTACTCGCCTTAAGTGTTGAGATCACCTTGGGAACCGTCTTTGACTCGCTTCCCTTAAACTTGAAGCTCGGTTCTGACGGAGGCTTGAACACAACCTCCCTGCGGTGACAATCGATGTTGGCATGATTTGCTGCTAGCCAATCCATGCCCAGAATTACATCGAAGTCACTCATCTCTAGGACAATCAGGGTCACTTCCAACGAGCGACCTTCTACCAAGACCTGACCGACCTTCACCTTTTCCCGTGTCACTAACTCTGCCCCTACAGGGGTTGCAGCTGATAAGCTAAAACCTAAGGGTTCTACTTCTAGCTGGGCTTGCCCCACAAATAGTGCAGAAATAAAGGAATGCGTGCAACCAAAATCAAAAAGTACAAAAGCTAAATGACCGAGAATAGGTAGGGTACCTGTGACGACTTTACCAGCACCCTCCGCGGCTCGGCCAGCATTAGCGTATGCTCCTCCTCTCTGGCGACCCTCCTGGTCAGTTTGGCCTAGGGAAGGCCTGATCGTGTCTCCTCTTCTAACCTGATCCAGAAGTTCAACAAGATATAATGTGTGGTATTTATATTTTTGTTTTATTATCTATTTGTAGGATGATGTTCAACAAGATGATACTGTTGATGAAGAAATAGACATATCTGATGAACATGTATTTATATTCATTACAGATTACATATGATTAGTATATATTATACATTATGTACTATAATACTACCCAATTATCTTTAACTACAAACAATACATTTTAACATTTAGATAACTGCTATGGAGCATGGTAATGTTGATGTAAGGGATATGGATAAAGAGAAATACGAAGAACATTGTAGGAGAGAAGACGATTCTGAGGTATATTTCTGA

mRNA sequence

ATGGAGCATAGTAATGTTGATGTAAGGGATAGGGATAAAGAGAAATACGAAGAACATTGTAGGAGAGAAGACGATTCTGAGGAGGATCATGTTGTTTTGTCTGATATTCTTAAGAAAAAAGCAAAGGGAAAGAGAAAGATGGTAAAAGAGACGACTAAGGATGATGTTCAACAAGATGATACTGTTGATGAAGAAATAGACATATCTGATGAACATATAACTGCTATGGAGCATGGTAATGTTGATGTAAGGGATATGGATAAAGAGAAATACGAAGAACATTGTAGGAGAGAAGACGATTCTGAGGTATATTTCTGA

Coding sequence (CDS)

ATGGAGCATAGTAATGTTGATGTAAGGGATAGGGATAAAGAGAAATACGAAGAACATTGTAGGAGAGAAGACGATTCTGAGGAGGATCATGTTGTTTTGTCTGATATTCTTAAGAAAAAAGCAAAGGGAAAGAGAAAGATGGTAAAAGAGACGACTAAGGATGATGTTCAACAAGATGATACTGTTGATGAAGAAATAGACATATCTGATGAACATATAACTGCTATGGAGCATGGTAATGTTGATGTAAGGGATATGGATAAAGAGAAATACGAAGAACATTGTAGGAGAGAAGACGATTCTGAGGTATATTTCTGA

Protein sequence

MEHSNVDVRDRDKEKYEEHCRREDDSEEDHVVLSDILKKKAKGKRKMVKETTKDDVQQDDTVDEEIDISDEHITAMEHGNVDVRDMDKEKYEEHCRREDDSEVYF
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0022485Tan0022485gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0022485.1-exonTan0022485.1-exon-LG08:15373697..15373777exon
Tan0022485.1-exonTan0022485.1-exon-LG08:15373879..15373956exon
Tan0022485.1-exonTan0022485.1-exon-LG08:15379776..15379832exon
Tan0022485.1-exonTan0022485.1-exon-LG08:15379940..15380041exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0022485.1-cdsTan0022485.1-cds-LG08:15373697..15373777CDS
Tan0022485.1-cdsTan0022485.1-cds-LG08:15373879..15373956CDS
Tan0022485.1-cdsTan0022485.1-cds-LG08:15379776..15379832CDS
Tan0022485.1-cdsTan0022485.1-cds-LG08:15379940..15380041CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0022485.1Tan0022485.1-proteinpolypeptide