Tan0022005.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCAACAATTAACAAATAATAACGAGATATCGACCCAGCAATACTATATATAGATTTTTCTCAAAACTTCAGCGACTGTATCGAGCTGTTTCTACTCCGGGGTTCATCGTCAAGGATTGCGCGAGCGAGGCGTGTCATTCGCTTGGAATTTAAGAGGTTTGTTGATCGAAACTTGAGTTGATGATTTTTCTTCTTGGAGCCGAATTGAATGCAAATTAGTGTTGAAAGGGTCTGCTGAATAAATCTCCACTGACCCTATTTGCTTTTTTTTTTCCTACTCGAAACAGTTACCCGGTGATTGAGTTTTGCATTTGTCGAAGATGCTGCTGCAGTTTTCAGACCCAGCCAAGCTTAAAACCAAGATGGTATGGTTTTCTTCTTCTGGGTTTTTATTTGAATTGCCATTTGAGTTCTTTAGAGTGTGGAATAGGGATATAGTGGAGCCATGGAGGTTTCAAGATCCAAAACCATGGTTGCACTCGAGTTCTGCAAGCTAAAAAGAGGAGATAATATAATATGTATCTGCAATTAACCACCCTGGGTTAGATAGTGGTGAATAAATGCTAATAGGTTTGGAGGAATAGATTCATGCTAGGGTGACCAACTATTTAGGCTTTAGTTTCATAAGATTTTTTTTTGTTAACCAAATTATAGAGTCTGATAAGACAATGGTCAAGGTGCCAAACGTCAGGGCACTCATGGATGCGCGAGCGTGCACACACACATATGTGTGTGTAAATATTTATGTATCTTCCATTACAGTGAAAGTTCTGGCAGAAGTCCTGCAACTATAAGTAAAATAAGGGAGTAAAGTAGTGAAAGAAACACTAATAGAGAGCAGAGCAGCCTTTGTTACGCTTATTAATGAATTGATCTGCATTCAGTAGATAACATGATTTTATAAATAATTAACCTGTAATGCAATATTATGTTCTATAAATAACTAAGGTACCGAAATAAAATTATAGTGGCTTGAATTCAACTTTCGTTGGTTGGTTAAATATTATAGTTTTCCAAGCTAGCTTGTGATTTTTGATACAATATTGCCTTACACAAGAATGGTTTTTTGGGTGAAGGCTCATTTGATCATTAAAGTAGTATATCATGGTTTAAAAGTACGAGTTGATTTAAATTTATTATCAATTTGAGACTGTCTGATGATTTGTCAATATGCACAGTGTGTGTTTGAGGACAAATTCATTGCACGTGATTCTGGTACACTTGAACAACTGAAGGAGATGACTTCTAGGCGTAGAGTTATCGAGGAGTCTATTAATGAAACTAGCTCTATCACAGATGCCATTGCAAGAGAAATGTCTGGCGGGTTGTCTTCTCACACTCAACAGGTAATATGTCAATCATTTGCATGCATAGTTAAACAAACAATAAATTTCATCATCCAACCTTGTGGGTAAATGCTACTTTGTGATTCTAATAAATGAATATATATGTAGCTCTCGGGTGAGCTTAATAAATAAAAACCCTTGATGTCTCTCGAGTTTGAGTCTTGGGGCAGGCGCGGGTGCCCTTGAGTATAGGAGAGCAAAGCTCCGACACCTGGTTATATAAAAAAAAGGAATATATATGTCTTCTATTATACTGACAAAACCTCTTTGTTATATGAGAATGGATGTGGCTTGATTTATTCTTTCAATTTCCGCTCATTTACATGTATGCTTGATTTAAACCAATGGCTCCTTCTCTTGTTCTTCTTTCATTTGAAAGGAAGAAGTGTTTTTTTCCCTCCACTCTCCTAACAGTACTGATTTAGTGGTTCAGCTCTGCCTCTGTCTGTCTCTCACATGCACAGTTTAGCCTGCAGTTGCAGCTAATAAGTTATATAGAGAAATGTTTTTTTTTTCGAACTACTGCTCTTGTCTTTTCTTTCTTCATAACCTACAATTTTGTCAAAAAAACGTCATCAGTGTTGTGTGCTCATTCAATTATGTTCTGTGCCTCAAAAAAATTCCAGGTCCTTCACAAACTACAGCAGTACCTGCCCTTGTTGGAAAATTTTGTTTCCCAAGTTGATCTGGTTGGCTATAACCTCAAGATTGTTCAGTGGACATCAGACCTAAAGATACGATGGTCGAGTGCTCTGAGCTCATCTTCATTATTTCATCTTAGGGGTCCAAAATTTTTCCAAATAGATAACTTGAGGTTTGAGGTAGCGATGACACTTTTCCTATACGGTGCCGTTATTAGGCAGAGGGCCTTAGAAGTTATATCAGAAGGTGGGTACTAATGAAGAACTAGTTTCCTGTAGAAGTCATGGATTTATACCTACTTGATCGCTTACTCTTCACTTATACAGATCAAGTGCAATCTGCGACCTTTTTTCGAGAAGCTGCTGGGGTTTATCAATATCTAGCTAAGGAGATTCTTCCAGCTATTCAACACTGTTTGCCTTCTGAAAGGTCACCAGAAGTTATTCCATCTACTTCAGTTGCGATGAGTCTTGTTTGTTTAGCTGAGGCTCAGGTTAGTTTGCTGGTCCTCTCAAAACCACCTTGAAACTTTGATCTGATAAAATGGCCTTGGAACTGACAGTGCAATTTGGGAGATTAATAAGTCTGTTTGGAGTATTTTGGAATTGTTAAAATCACTTTTATCAGGCCCAAAATAACTAAAAAGAGCATGACAAAAGTGATTTTGGCCATTCAAAAATCACTCCCAAGGAATGTTTGAGAGTGATTTTTGAAGGACCAAAACCACTTTTTTCAAACCCTTTTTTAGTCATTTTAGACCCGACACAAGTGATTCCTAAATCACTCTCAAACATGCCGTAAATAGTATAGTTGGTTTTGATCAAGGATACGAATTCGGAAGGTTTCATTTTCCTTTTAATATCGTTCTCAATGATTATTATCTATATTGATCACATGTCATAAAATATATAACAGGCTGTCACAACGATGAGGGCTGAAGAAAAGGGATCTATTTCAAGCCTTTTGGCAAAGCTACACTATGGGATTGTTGACTTGCTCAACGAAACAGCAAATCATTTACGCATAATTTCTGGACAATGTAAAGATATGTCCTCAAGCTTTCTGGTAAGAATGCTTCTTGCAAGTTCATGTTCGTTTTAAATGTTCGTATCGAACTAGTTGTGTATGTATAAGACTGGTGATAATCTTTTATAATTTTTCGTTGGTATAGGAATTTCTATCTGCTTTCCGAGCTCTACATGAGTTGAAAAGTCGGAAAAATCTTGCAAAAGAACTGATGTCTGGTGGCCAAGCTGGAGTTGCTATAGGAGTTCTTAGAGATGCATTAACTGATGTGAAAAAGGAAATGCCAAGAGAAAATTCATGGAAACTTGTTTTCGGAACCGAAATAGATATCGTAACCGAAATGCTCAGGAAGTTCGAACGCGAAAATGAAATCGTATGGCACAAGAAAATTCCTTCAAGAGAGGAGTTGCCAACACCTAAAGGTAGCCAAATCGTCAAATTGATACCTTATCGTCCCAAAAAATGGGAGAGAGAGCTAGCATTCAAAATATGAACTGAAGCTCGAAGTAAATATCAGCATTTGTTCTTGTTGGGGACAATGTTGGGAGCTACTTTTGTCCCCAACCCCATTCTATTAAAGCACAAGAAAATATGCTGCTCCTTTTAGTTCATCTTTGAGAAATATCTCCTTTACTGGTTGAGTGAATTTTTGGTGAAAATGTGAAGCATTTGTATAGGAATTGACATTGATTATAGTGGTTGCTAGTTCTCTTACTCCATTTTTTTATTTGGAATGGTCATAAATATGTAAAGTTTGCATAATATAAGATTGATTTCACTGTGTTTCTAGATGAATGTTCATTCCATCAA CGCAACAATTAACAAATAATAACGAGATATCGACCCAGCAATACTATATATAGATTTTTCTCAAAACTTCAGCGACTGTATCGAGCTGTTTCTACTCCGGGGTTCATCGTCAAGGATTGCGCGAGCGAGGCGTGTCATTCGCTTGGAATTTAAGAGTTACCCGGTGATTGAGTTTTGCATTTGTCGAAGATGCTGCTGCAGTTTTCAGACCCAGCCAAGCTTAAAACCAAGATGTGTGTGTTTGAGGACAAATTCATTGCACGTGATTCTGGTACACTTGAACAACTGAAGGAGATGACTTCTAGGCGTAGAGTTATCGAGGAGTCTATTAATGAAACTAGCTCTATCACAGATGCCATTGCAAGAGAAATGTCTGGCGGGTTGTCTTCTCACACTCAACAGGTCCTTCACAAACTACAGCAGTACCTGCCCTTGTTGGAAAATTTTGTTTCCCAAGTTGATCTGGTTGGCTATAACCTCAAGATTGTTCAGTGGACATCAGACCTAAAGATACGATGGTCGAGTGCTCTGAGCTCATCTTCATTATTTCATCTTAGGGGTCCAAAATTTTTCCAAATAGATAACTTGAGGTTTGAGGTAGCGATGACACTTTTCCTATACGGTGCCGTTATTAGGCAGAGGGCCTTAGAAGTTATATCAGAAGATCAAGTGCAATCTGCGACCTTTTTTCGAGAAGCTGCTGGGGTTTATCAATATCTAGCTAAGGAGATTCTTCCAGCTATTCAACACTGTTTGCCTTCTGAAAGGTCACCAGAAGTTATTCCATCTACTTCAGTTGCGATGAGTCTTGTTTGTTTAGCTGAGGCTCAGGCTGTCACAACGATGAGGGCTGAAGAAAAGGGATCTATTTCAAGCCTTTTGGCAAAGCTACACTATGGGATTGTTGACTTGCTCAACGAAACAGCAAATCATTTACGCATAATTTCTGGACAATGTAAAGATATGTCCTCAAGCTTTCTGGAATTTCTATCTGCTTTCCGAGCTCTACATGAGTTGAAAAGTCGGAAAAATCTTGCAAAAGAACTGATGTCTGGTGGCCAAGCTGGAGTTGCTATAGGAGTTCTTAGAGATGCATTAACTGATGTGAAAAAGGAAATGCCAAGAGAAAATTCATGGAAACTTGTTTTCGGAACCGAAATAGATATCGTAACCGAAATGCTCAGGAAGTTCGAACGCGAAAATGAAATCGTATGGCACAAGAAAATTCCTTCAAGAGAGGAGTTGCCAACACCTAAAGGTAGCCAAATCGTCAAATTGATACCTTATCGTCCCAAAAAATGGGAGAGAGAGCTAGCATTCAAAATATGAACTGAAGCTCGAAGTAAATATCAGCATTTGTTCTTGTTGGGGACAATGTTGGGAGCTACTTTTGTCCCCAACCCCATTCTATTAAAGCACAAGAAAATATGCTGCTCCTTTTAGTTCATCTTTGAGAAATATCTCCTTTACTGGTTGAGTGAATTTTTGGTGAAAATGTGAAGCATTTGTATAGGAATTGACATTGATTATAGTGGTTGCTAGTTCTCTTACTCCATTTTTTTATTTGGAATGGTCATAAATATGTAAAGTTTGCATAATATAAGATTGATTTCACTGTGTTTCTAGATGAATGTTCATTCCATCAA ATGCTGCTGCAGTTTTCAGACCCAGCCAAGCTTAAAACCAAGATGTGTGTGTTTGAGGACAAATTCATTGCACGTGATTCTGGTACACTTGAACAACTGAAGGAGATGACTTCTAGGCGTAGAGTTATCGAGGAGTCTATTAATGAAACTAGCTCTATCACAGATGCCATTGCAAGAGAAATGTCTGGCGGGTTGTCTTCTCACACTCAACAGGTCCTTCACAAACTACAGCAGTACCTGCCCTTGTTGGAAAATTTTGTTTCCCAAGTTGATCTGGTTGGCTATAACCTCAAGATTGTTCAGTGGACATCAGACCTAAAGATACGATGGTCGAGTGCTCTGAGCTCATCTTCATTATTTCATCTTAGGGGTCCAAAATTTTTCCAAATAGATAACTTGAGGTTTGAGGTAGCGATGACACTTTTCCTATACGGTGCCGTTATTAGGCAGAGGGCCTTAGAAGTTATATCAGAAGATCAAGTGCAATCTGCGACCTTTTTTCGAGAAGCTGCTGGGGTTTATCAATATCTAGCTAAGGAGATTCTTCCAGCTATTCAACACTGTTTGCCTTCTGAAAGGTCACCAGAAGTTATTCCATCTACTTCAGTTGCGATGAGTCTTGTTTGTTTAGCTGAGGCTCAGGCTGTCACAACGATGAGGGCTGAAGAAAAGGGATCTATTTCAAGCCTTTTGGCAAAGCTACACTATGGGATTGTTGACTTGCTCAACGAAACAGCAAATCATTTACGCATAATTTCTGGACAATGTAAAGATATGTCCTCAAGCTTTCTGGAATTTCTATCTGCTTTCCGAGCTCTACATGAGTTGAAAAGTCGGAAAAATCTTGCAAAAGAACTGATGTCTGGTGGCCAAGCTGGAGTTGCTATAGGAGTTCTTAGAGATGCATTAACTGATGTGAAAAAGGAAATGCCAAGAGAAAATTCATGGAAACTTGTTTTCGGAACCGAAATAGATATCGTAACCGAAATGCTCAGGAAGTTCGAACGCGAAAATGAAATCGTATGGCACAAGAAAATTCCTTCAAGAGAGGAGTTGCCAACACCTAAAGGTAGCCAAATCGTCAAATTGATACCTTATCGTCCCAAAAAATGGGAGAGAGAGCTAGCATTCAAAATATGA MLLQFSDPAKLKTKMCVFEDKFIARDSGTLEQLKEMTSRRRVIEESINETSSITDAIAREMSGGLSSHTQQVLHKLQQYLPLLENFVSQVDLVGYNLKIVQWTSDLKIRWSSALSSSSLFHLRGPKFFQIDNLRFEVAMTLFLYGAVIRQRALEVISEDQVQSATFFREAAGVYQYLAKEILPAIQHCLPSERSPEVIPSTSVAMSLVCLAEAQAVTTMRAEEKGSISSLLAKLHYGIVDLLNETANHLRIISGQCKDMSSSFLEFLSAFRALHELKSRKNLAKELMSGGQAGVAIGVLRDALTDVKKEMPRENSWKLVFGTEIDIVTEMLRKFERENEIVWHKKIPSREELPTPKGSQIVKLIPYRPKKWERELAFKI Homology
BLAST of Tan0022005.1 vs. ExPASy Swiss-Prot
Match: P79020 (pH-response regulator protein palA/RIM20 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=palA PE=1 SV=3) HSP 1 Score: 60.8 bits (146), Expect = 3.7e-08 Identity = 52/230 (22.61%), Postives = 111/230 (48.26%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy Swiss-Prot
Match: Q9W6C5 (Programmed cell death 6-interacting protein OS=Xenopus laevis OX=8355 GN=pdcd6ip PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.2e-07 Identity = 58/266 (21.80%), Postives = 120/266 (45.11%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy Swiss-Prot
Match: Q12033 (pH-response regulator protein palA/RIM20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RIM20 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05 Identity = 59/259 (22.78%), Postives = 113/259 (43.63%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy Swiss-Prot
Match: Q9QZA2 (Programmed cell death 6-interacting protein OS=Rattus norvegicus OX=10116 GN=Pdcd6ip PE=1 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 3.0e-05 Identity = 69/319 (21.63%), Postives = 129/319 (40.44%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy Swiss-Prot
Match: Q8WZL4 (pH-response regulator protein RIM20 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RIM20 PE=3 SV=2) HSP 1 Score: 50.8 bits (120), Expect = 3.9e-05 Identity = 73/291 (25.09%), Postives = 127/291 (43.64%), Query Frame = 0
BLAST of Tan0022005.1 vs. NCBI nr
Match: XP_023541232.1 (uncharacterized protein LOC111801459 [Cucurbita pepo subsp. pepo] >XP_023541233.1 uncharacterized protein LOC111801459 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 681.8 bits (1758), Expect = 3.4e-192 Identity = 354/379 (93.40%), Postives = 366/379 (96.57%), Query Frame = 0
BLAST of Tan0022005.1 vs. NCBI nr
Match: XP_022944843.1 (uncharacterized protein LOC111449253 [Cucurbita moschata] >XP_022944844.1 uncharacterized protein LOC111449253 [Cucurbita moschata]) HSP 1 Score: 680.2 bits (1754), Expect = 9.9e-192 Identity = 353/379 (93.14%), Postives = 365/379 (96.31%), Query Frame = 0
BLAST of Tan0022005.1 vs. NCBI nr
Match: XP_038891534.1 (uncharacterized protein LOC120080925 [Benincasa hispida] >XP_038891535.1 uncharacterized protein LOC120080925 [Benincasa hispida]) HSP 1 Score: 678.7 bits (1750), Expect = 2.9e-191 Identity = 346/379 (91.29%), Postives = 364/379 (96.04%), Query Frame = 0
BLAST of Tan0022005.1 vs. NCBI nr
Match: KAG6573989.1 (hypothetical protein SDJN03_27876, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 677.2 bits (1746), Expect = 8.4e-191 Identity = 352/379 (92.88%), Postives = 364/379 (96.04%), Query Frame = 0
BLAST of Tan0022005.1 vs. NCBI nr
Match: XP_022968231.1 (uncharacterized protein LOC111467531 [Cucurbita maxima]) HSP 1 Score: 671.4 bits (1731), Expect = 4.6e-189 Identity = 349/379 (92.08%), Postives = 363/379 (95.78%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy TrEMBL
Match: A0A6J1FZA5 (uncharacterized protein LOC111449253 OS=Cucurbita moschata OX=3662 GN=LOC111449253 PE=4 SV=1) HSP 1 Score: 680.2 bits (1754), Expect = 4.8e-192 Identity = 353/379 (93.14%), Postives = 365/379 (96.31%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy TrEMBL
Match: A0A6J1HUA9 (uncharacterized protein LOC111467531 OS=Cucurbita maxima OX=3661 GN=LOC111467531 PE=4 SV=1) HSP 1 Score: 671.4 bits (1731), Expect = 2.2e-189 Identity = 349/379 (92.08%), Postives = 363/379 (95.78%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy TrEMBL
Match: A0A1S3BFB8 (uncharacterized protein LOC103489257 OS=Cucumis melo OX=3656 GN=LOC103489257 PE=4 SV=1) HSP 1 Score: 665.6 bits (1716), Expect = 1.2e-187 Identity = 341/379 (89.97%), Postives = 359/379 (94.72%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy TrEMBL
Match: A0A0A0KR44 (BRO1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608410 PE=4 SV=1) HSP 1 Score: 658.3 bits (1697), Expect = 1.9e-185 Identity = 338/379 (89.18%), Postives = 356/379 (93.93%), Query Frame = 0
BLAST of Tan0022005.1 vs. ExPASy TrEMBL
Match: A0A5A7SYL1 (BRO1 domain-containing protein BROX OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00750 PE=4 SV=1) HSP 1 Score: 601.3 bits (1549), Expect = 2.8e-168 Identity = 309/341 (90.62%), Postives = 324/341 (95.01%), Query Frame = 0
BLAST of Tan0022005.1 vs. TAIR 10
Match: AT1G13310.1 (Endosomal targeting BRO1-like domain-containing protein ) HSP 1 Score: 308.5 bits (789), Expect = 7.3e-84 Identity = 170/369 (46.07%), Postives = 242/369 (65.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|