Tan0021679.1 (mRNA) Snake gourd v1

Overview


Name	Tan0021679.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG01: 68040638 .. 68041710 (+)
Sequence length	738
RNA-Seq Expression	Tan0021679.1
Synteny	Tan0021679.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATAAATGATAATAGGACATGGAAGAATGAGGTCATAAGCACAAATTTTATGGTCGAGGATGTTGATATCATTCACAATATACCTATTGCACGGGCTAGAGGAAATAATGAGATCATTTGGAGACTTACTCCAACTGGTATGTTTTCGGTCCGGAGTGCGTTAAGTTAGCAGTTAGTTTGGTGAGCGTCAATCTTCCTTCCTCTTCAAATACGGATCGGGTAGAACGGTTTTGGAAGAGACATTGGGACACCATGGTTCCAACAAAAATAAAGATTTGATGTTGGCGTGCCATTCATAATATTTTGCCGACTCGGTGTGCACTTGTGAAGAAAGGTGTTGATGTACCATTGAAGTGTCCCCTCTGTCACAAGCATCCAAAAACAATCACACAAATATTATGGGGATGTCAAGTAACCTCTAAATTTTGGGATCTATTTTGCCTTCTTATGCGGGTATGTTTTATGTTAACAGGAATTCTTGAGCGGTTGCTGACTTTTTCCAAGATGTTGGCCACTACCGAGACTCAGCTTCGTGAGGTGGTACATCAAAGTACCCCTCATCCACAACGAGGGGTAATGAGTACGACACCTTTGCACTGGTTGGCTGCGCCACAAGGATGGTGGAAACTTAATACAGATGCATCTTGGAATGAAGCACATTTGTATGGAGATCTGGGTTGGATCCTTCGTGATTGTAATGGACATATTATCGGCGCGGGACACAAATTTCTTTCTTCAAGATGGCCGGTACTAATCTGCAAACTTGCTGCTATTCTTCTTGGTTTATTGAACGTTGTGGACTTTTCCATTCCTTTAATGGTTGAGTCTGACTTAATGAATACCATTTCCACGATCAATGGCACACTGGTTGATTTAACGGAGGTCCAAGACTATGTGCAAGAGGTGAAAGATAAATCGAAATGTTGGGACTACATACATTTTGTTTATTGTCATTGTAGCACTAATGTAATGGCTCATATGCTAGCTAAGAGGGCTCAAACTTACCAGTGCACTCAAGTCTGGACGGGCGAGAGTTGTAATTCTGTGTCGGGATTGTTCTCTTCGTAA

mRNA sequence

ATGCTTATAAATGATAATAGGACATGGAAGAATGAGGTCATAAGCACAAATTTTATGGTCGAGGATGTTGATATCATTCACAATATACCTATTGCACGGGCTAGAGGAAATAATGAGATCATTTGGAGACTTACTCCAACTGGAATTCTTGAGCGGTTGCTGACTTTTTCCAAGATGTTGGCCACTACCGAGACTCAGCTTCGTGAGGTGGTACATCAAAGTACCCCTCATCCACAACGAGGGGTAATGAGTACGACACCTTTGCACTGGTTGGCTGCGCCACAAGGATGGTGGAAACTTAATACAGATGCATCTTGGAATGAAGCACATTTGTATGGAGATCTGGGTTGGATCCTTCGTGATTGTAATGGACATATTATCGGCGCGGGACACAAATTTCTTTCTTCAAGATGGCCGGTACTAATCTGCAAACTTGCTGCTATTCTTCTTGGTTTATTGAACGTTGTGGACTTTTCCATTCCTTTAATGGTTGAGTCTGACTTAATGAATACCATTTCCACGATCAATGGCACACTGGTTGATTTAACGGAGGTCCAAGACTATGTGCAAGAGGTGAAAGATAAATCGAAATGTTGGGACTACATACATTTTGTTTATTGTCATTGTAGCACTAATGTAATGGCTCATATGCTAGCTAAGAGGGCTCAAACTTACCAGTGCACTCAAGTCTGGACGGGCGAGAGTTGTAATTCTGTGTCGGGATTGTTCTCTTCGTAA

Coding sequence (CDS)

ATGCTTATAAATGATAATAGGACATGGAAGAATGAGGTCATAAGCACAAATTTTATGGTCGAGGATGTTGATATCATTCACAATATACCTATTGCACGGGCTAGAGGAAATAATGAGATCATTTGGAGACTTACTCCAACTGGAATTCTTGAGCGGTTGCTGACTTTTTCCAAGATGTTGGCCACTACCGAGACTCAGCTTCGTGAGGTGGTACATCAAAGTACCCCTCATCCACAACGAGGGGTAATGAGTACGACACCTTTGCACTGGTTGGCTGCGCCACAAGGATGGTGGAAACTTAATACAGATGCATCTTGGAATGAAGCACATTTGTATGGAGATCTGGGTTGGATCCTTCGTGATTGTAATGGACATATTATCGGCGCGGGACACAAATTTCTTTCTTCAAGATGGCCGGTACTAATCTGCAAACTTGCTGCTATTCTTCTTGGTTTATTGAACGTTGTGGACTTTTCCATTCCTTTAATGGTTGAGTCTGACTTAATGAATACCATTTCCACGATCAATGGCACACTGGTTGATTTAACGGAGGTCCAAGACTATGTGCAAGAGGTGAAAGATAAATCGAAATGTTGGGACTACATACATTTTGTTTATTGTCATTGTAGCACTAATGTAATGGCTCATATGCTAGCTAAGAGGGCTCAAACTTACCAGTGCACTCAAGTCTGGACGGGCGAGAGTTGTAATTCTGTGTCGGGATTGTTCTCTTCGTAA

Protein sequence

MLINDNRTWKNEVISTNFMVEDVDIIHNIPIARARGNNEIIWRLTPTGILERLLTFSKMLATTETQLREVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAAILLGLLNVVDFSIPLMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFVYCHCSTNVMAHMLAKRAQTYQCTQVWTGESCNSVSGLFSS

Homology

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BLAST of Tan0021679.1 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-12
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 88  LHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAA 147
           L W   P   W LN DASW+++   G +GWI+R  +G I+ AG++F+ +   V + + +A
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASA 128

Query: 148 ILLGLLNVVDFSI--PLMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFV 207
           IL GL N+ +  +  PL +E+D     S +N    DLT+    V+E+ +     + + F 
Sbjct: 129 ILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFA 188

Query: 208 YCHCSTNVMAHMLAKRAQTYQCTQVW 232
                TN  AH LA+RA   + + +W
Sbjct: 189 KVGRETNGCAHSLAQRASVLRESMIW 214

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BLAST of Tan0021679.1 vs. NCBI nr
Match: XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11
Identity = 50/160 (31.25%), Postives = 86/160 (53.75%), Query Frame = 0


Query: 84  STTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLIC 143
           ++T LHW     GW KLN D S++     G +G ILRD +G  + A  K L S    L  
Sbjct: 317 ASTRLHWEKPRLGWMKLNVDGSFDADRGKGGIGMILRDNSGSTVFAACKSLDSCKNALEA 376

Query: 144 KLAAILLGLLNVVDFSI-PLMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYI 203
           ++ A + GL+  + +++ P+++E+D ++ ++ +     DL+E+ + VQE+K        +
Sbjct: 377 EIRACMEGLILALQWTMRPILIETDCVSLVNLLKEGNRDLSELANLVQEIKRLLSERREV 436

Query: 204 HFVYCHCSTNVMAHMLAKRAQTYQCTQVWTGESCNSVSGL 243
                H S N ++H+LA RA+    + +W   SCN +S L
Sbjct: 437 LVTKIHRSQNGVSHLLANRARADSISGLWPEGSCNFISQL 476

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BLAST of Tan0021679.1 vs. NCBI nr
Match: XP_030964220.1 (uncharacterized protein LOC115985421 [Quercus lobata])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-08
Identity = 44/143 (30.77%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 90   WLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAAIL 149
            W A P G++K+NTDA+ +       +G ++R C G I+ A  K L + +   I +   +L
Sbjct: 1345 WKAPPLGFYKVNTDAAASNDERNSCIGVVIRGCKGEILAASSKVLPACFSAEISEAIVVL 1404

Query: 150  LGLLNVVDFSIP-LMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFVYCH 209
             G+L VV   +  +++ESD ++ I  IN  +    E+   VQ + + S C+++  F +  
Sbjct: 1405 EGVLLVVKMEVSHVIIESDALSIIQAINDGVFG-GEIGHIVQNIWEVSSCFNWCSFHHLK 1464

Query: 210  CSTNVMAHMLAKRAQTYQCTQVW 232
               N +AH LAK  +    +QVW
Sbjct: 1465 REGNRVAHELAKAVRITDKSQVW 1486

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BLAST of Tan0021679.1 vs. NCBI nr
Match: KAA8530045.1 (hypothetical protein F0562_004754 [Nyssa sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-08
Identity = 53/212 (25.00%), Postives = 96/212 (45.28%), Query Frame = 0


Query: 9   WKNEVISTNFMVEDVDIIHNIPIARARGNNEIIWRLTPTGILERLLTFSKMLATTETQLR 68
           W  + +++ F+  +V+ I  IP+      +++IW  +   I      FS         L 
Sbjct: 8   WDFDKLTSFFLPREVEDIRRIPLGLKPTLDKLIWHFSSNKI------FSVKCRVVVNFLS 67

Query: 69  EVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIG 128
           +V+   +              W A   G +KLN D SW+++   G +G ++RDC G +I 
Sbjct: 68  DVMVGKS-------------KWKAPEVGLFKLNIDGSWSDSDGRGGVGGLVRDCQGEVIE 127

Query: 129 AGHKFLSSRWPVLICKLAAILLGLLNVVDFSI-PLMVESDLMNTISTINGTLVDLTEVQD 188
              K L         ++ AIL GL+   +  I  +++E D +N++  I   L D + +  
Sbjct: 128 GFGKMLVDCGSATQVEMFAILHGLIFAKEIGIHDIILEGDSLNSLLAIKSPLEDFSSLGI 187

Query: 189 YVQEVKDKSKCWDYIHFVYCHCSTNVMAHMLA 220
           YV+EV      +++I + +     N +AH+LA
Sbjct: 188 YVEEVNVAFCFFNWISYAHVRREANAVAHVLA 200

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BLAST of Tan0021679.1 vs. NCBI nr
Match: EEE57524.1 (hypothetical protein OsJ_07834 [Oryza sativa Japonica Group])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-08
Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 66  QLREVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGH 125
           QLR    Q      +G    T   W+  P GW KLN D S+N +     +G ILR+  G 
Sbjct: 224 QLRNSSRQGGSERSQG----TDEAWVRPPPGWSKLNVDGSFNNSSGQAGIGMILRNSEGE 283

Query: 126 IIGAGHKFLSSRWPVLICKLAAILLGLLNVVDFSI-PLMVESDLMNTISTINGTLVDLTE 185
            I  G + +++    L  +L A   GL   + +SI P+++E+D +  +S ING   D + 
Sbjct: 284 AIFTGRQAIANCVDALESELLACKFGLDLALHWSILPIILETDSILAVSAINGKTEDKSR 343

Query: 186 VQDYVQEVKDKSKCWDYIHFVYCHCSTNVMAHMLAKRAQTYQCTQVWTGESCNSVSGL 243
               ++E++   K    +     H   N ++H+LA  A+    +  W G   N VS L
Sbjct: 344 FAYLIRELRLLQKGEREVKVQKVHRDHNKISHVLANSARVANRSDFWFGHESNCVSAL 397

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BLAST of Tan0021679.1 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 88  LHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAA 147
           L W   P   W LN DASW+++   G +GWI+R  +G I+ AG++F+ +   V + + +A
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASA 128

Query: 148 ILLGLLNVVDFSI--PLMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFV 207
           IL GL N+ +  +  PL +E+D     S +N    DLT+    V+E+ +     + + F 
Sbjct: 129 ILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFA 188

Query: 208 YCHCSTNVMAHMLAKRAQTYQCTQVW 232
                TN  AH LA+RA   + + +W
Sbjct: 189 KVGRETNGCAHSLAQRASVLRESMIW 214

[Close]

BLAST of Tan0021679.1 vs. ExPASy TrEMBL
Match: A0A5J5AG70 (RNase H domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004754 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-09
Identity = 53/212 (25.00%), Postives = 96/212 (45.28%), Query Frame = 0


Query: 9   WKNEVISTNFMVEDVDIIHNIPIARARGNNEIIWRLTPTGILERLLTFSKMLATTETQLR 68
           W  + +++ F+  +V+ I  IP+      +++IW  +   I      FS         L 
Sbjct: 8   WDFDKLTSFFLPREVEDIRRIPLGLKPTLDKLIWHFSSNKI------FSVKCRVVVNFLS 67

Query: 69  EVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIG 128
           +V+   +              W A   G +KLN D SW+++   G +G ++RDC G +I 
Sbjct: 68  DVMVGKS-------------KWKAPEVGLFKLNIDGSWSDSDGRGGVGGLVRDCQGEVIE 127

Query: 129 AGHKFLSSRWPVLICKLAAILLGLLNVVDFSI-PLMVESDLMNTISTINGTLVDLTEVQD 188
              K L         ++ AIL GL+   +  I  +++E D +N++  I   L D + +  
Sbjct: 128 GFGKMLVDCGSATQVEMFAILHGLIFAKEIGIHDIILEGDSLNSLLAIKSPLEDFSSLGI 187

Query: 189 YVQEVKDKSKCWDYIHFVYCHCSTNVMAHMLA 220
           YV+EV      +++I + +     N +AH+LA
Sbjct: 188 YVEEVNVAFCFFNWISYAHVRREANAVAHVLA 200

[Close]

BLAST of Tan0021679.1 vs. ExPASy TrEMBL
Match: B9F1I2 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_07834 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-09
Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 66  QLREVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGH 125
           QLR    Q      +G    T   W+  P GW KLN D S+N +     +G ILR+  G 
Sbjct: 224 QLRNSSRQGGSERSQG----TDEAWVRPPPGWSKLNVDGSFNNSSGQAGIGMILRNSEGE 283

Query: 126 IIGAGHKFLSSRWPVLICKLAAILLGLLNVVDFSI-PLMVESDLMNTISTINGTLVDLTE 185
            I  G + +++    L  +L A   GL   + +SI P+++E+D +  +S ING   D + 
Sbjct: 284 AIFTGRQAIANCVDALESELLACKFGLDLALHWSILPIILETDSILAVSAINGKTEDKSR 343

Query: 186 VQDYVQEVKDKSKCWDYIHFVYCHCSTNVMAHMLAKRAQTYQCTQVWTGESCNSVSGL 243
               ++E++   K    +     H   N ++H+LA  A+    +  W G   N VS L
Sbjct: 344 FAYLIRELRLLQKGEREVKVQKVHRDHNKISHVLANSARVANRSDFWFGHESNCVSAL 397

[Close]

BLAST of Tan0021679.1 vs. ExPASy TrEMBL
Match: A0A6P5S2T0 (uncharacterized protein LOC110751913 OS=Prunus avium OX=42229 GN=LOC110751913 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 49/196 (25.00%), Postives = 86/196 (43.88%), Query Frame = 0


Query: 41  IWRLTPTGILERL----LTFSKMLATTETQLREVVHQSTPHPQRGVMSTTPLHWLAAPQG 100
           IW+     + E      +  + +L    T+ R    +  P P + + S+    W   P  
Sbjct: 23  IWKTRNLAVFESAKADPIEATHLLLNQVTEYRAAKQEVQPQPHQAISSSMAQSWCIPPPS 82

Query: 101 WWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAAILLGLLNVV 160
             K+N D +W    L G +GW++RD +G ++ AG +        L+ +L AI   L    
Sbjct: 83  LLKVNCDVAWFAQLLRGGVGWVIRDSHGLLLCAGGEGDLRGSSALLMELLAIRHALSACA 142

Query: 161 DFSIP-LMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFVYCHCSTNVMA 220
            F +  +MVESD    IS +NG     ++++  V +++     +  + FV+   S N +A
Sbjct: 143 HFQLTHVMVESDTQRGISMLNGQATVDSDLEGIVFDIQQLVATFSQVSFVFAPKSCNRVA 202

Query: 221 HMLAKRAQTYQCTQVW 232
           H +A     +    VW
Sbjct: 203 HTVAGFVSKHGGNHVW 218

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BLAST of Tan0021679.1 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 46/174 (26.44%), Postives = 78/174 (44.83%), Query Frame = 0


Query: 59  MLATTETQLREVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWI 118
           +L    ++ R       P P + V S  PL W   P G  K+N+DA+W+   + G +GW+
Sbjct: 258 LLLKQVSEFRTAKQDLQPQPLQPVSSPAPLSWCKPPPGLLKVNSDAAWSAQRMGGGVGWV 317

Query: 119 LRDCNGHIIGAGHKFLSSRWPVLICKLAAILLGLLNVVDFSI-PLMVESDLMNTISTING 178
           +RD  G ++ AG +        L+ +L AI   L    +F +  ++VESD    I  +NG
Sbjct: 318 IRDSFGLLLCAGGQGDLHGSSALMMELLAIRHALSECANFHLTDIIVESDSQKGILMLNG 377

Query: 179 TLVDLTEVQDYVQEVKDKSKCWDYIHFVYCHCSTNVMAHMLAKRAQTYQCTQVW 232
                ++++  V +++        + FV+   S N   H +A          VW
Sbjct: 378 RATVDSDLEGIVFDIRQLVASLSRVSFVFAPSSCNQATHSVAGFVSKQGGNHVW 431

[Close]

BLAST of Tan0021679.1 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-06
Identity = 37/125 (29.60%), Postives = 56/125 (44.80%), Query Frame = 0


Query: 57  SKMLATTETQLREVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLG 116
           ++ L   ET     VH +T   Q     ++   W   P+GW K N D+ + +   Y   G
Sbjct: 175 TEWLNANETTENTNVHVATNPIQTSRRDSS--QWNPPPEGWVKCNFDSGYTQGSPYTRSG 234

Query: 117 WILRDCNGHIIGAGHKFLSSRWPVLICKLAAILLGLLNVVDFSIP-----LMVESDLMNT 176
           W +R+CNGHI+  G+  L S      C L A  LG L+ +          +  ESD  + 
Sbjct: 235 WTIRECNGHIVLCGNAKLQSS----TCSLHAEALGFLHALQVIWAHGLRYVWFESDSKSL 293

[Close]

BLAST of Tan0021679.1 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04
Identity = 23/89 (25.84%), Postives = 37/89 (41.57%), Query Frame = 0


Query: 64  ETQLREVVHQSTPHPQRGVMSTTPLHWLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCN 123
           ET + +  +  +        S     W   P+G+ K N D+ + +   Y    WI+RD N
Sbjct: 36  ETTINDTANSHSTEQPNDRPSGRSKEWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSN 95

Query: 124 GHIIGAGHKFLSSRWPVLICKLAAILLGL 153
           GH+I +G   L   +  L  +    L  L
Sbjct: 96  GHVIHSGCAKLQQSYSALQAEALGFLHAL 124

[Close]

BLAST of Tan0021679.1 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.2e-04
Identity = 31/125 (24.80%), Postives = 53/125 (42.40%), Query Frame = 0


Query: 99  KLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAAILLGLLNVVDF 158
           K N DAS +E  +   LGW++R+  G ++  G      R      + +A++  +     F
Sbjct: 49  KCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATSAF 108

Query: 159 SIPLMV-ESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFVYCHCSTNVMAHM 218
               ++ E D  N    IN T  D   ++ Y+  +K     +    F++ H   N  A  
Sbjct: 109 GYTKVIFEGDNSNVNRLIN-TKSDNPRLKHYLDTIKSWIPSFTSTEFIFTHREQNQCADT 168

Query: 219 LAKRA 223
           L K+A
Sbjct: 169 LVKKA 172

[Close]

BLAST of Tan0021679.1 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.2e-04
Identity = 32/132 (24.24%), Postives = 58/132 (43.94%), Query Frame = 0


Query: 90  WLAAPQGWWKLNTDASWNEAHLYGDLGWILRDCNGHIIGAGHKFLSSRWPVLICKLAAIL 149
           W    +GW K N D S+    +    GW++RD NG  + AG          L  ++ A++
Sbjct: 52  WRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQALI 111

Query: 150 LGLLNVVDFSIP-LMVESDLMNTISTINGTLVDLTEVQDYVQEVKDKSKCWDYIHFVYCH 209
           + + +        +  E D       ING+ V    V ++++++    + ++ IHF +  
Sbjct: 112 ISMQHCWSHGYKRVCFEGDNKMLFDLINGSKV-YFGVHNWIRDIHWWLRKFESIHFNWIR 171

Query: 210 CSTNVMAHMLAK 221
              N  A +LAK
Sbjct: 172 RHHNTPADILAK 182

The following BLAST results are available for this feature:

BLAST of Tan0021679.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021679.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.5e-12	32.88	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_025877173.1	2.2e-11	31.25	uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X...	[more]
XP_030964220.1	1.4e-08	30.77	uncharacterized protein LOC115985421 [Quercus lobata]	[more]
KAA8530045.1	1.4e-08	25.00	hypothetical protein F0562_004754 [Nyssa sinensis]	[more]
EEE57524.1	1.4e-08	29.21	hypothetical protein OsJ_07834 [Oryza sativa Japonica Group]	[more]

BLAST of Tan0021679.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.7e-12	32.88	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5J5AG70	6.6e-09	25.00	RNase H domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004754 PE...	[more]
B9F1I2	6.6e-09	29.21	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_07834 PE...	[more]
A0A6P5S2T0	1.1e-08	25.00	uncharacterized protein LOC110751913 OS=Prunus avium OX=42229 GN=LOC110751913 PE...	[more]
A0A6J5VSP2	1.9e-08	26.44	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 S...	[more]

BLAST of Tan0021679.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02650.1	1.4e-06	29.60	Ribonuclease H-like superfamily protein	[more]
AT4G09775.1	4.8e-04	25.84	BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot...	[more]
AT1G52990.1	8.2e-04	24.80	thioredoxin family protein	[more]
AT1G27870.1	8.2e-04	24.24	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 101..222 e-value: 1.4E-17 score: 63.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 96..223 e-value: 4.7E-6 score: 28.7
None	No IPR available	PANTHER	PTHR33033:SF52	OS02G0175302 PROTEIN	coord: 93..242
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 93..242
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 100..220 e-value: 1.73324E-12 score: 60.4056
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 96..227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0021679	Tan0021679	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0021679.1-exon	Tan0021679.1-exon-LG01:68040638..68040779	exon
Tan0021679.1-exon	Tan0021679.1-exon-LG01:68041115..68041710	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0021679.1-cds	Tan0021679.1-cds-LG01:68040638..68040779	CDS
Tan0021679.1-cds	Tan0021679.1-cds-LG01:68041115..68041710	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0021679.1	Tan0021679.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity