Tan0020536.1 (mRNA) Snake gourd v1

Overview
NameTan0020536.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG11: 54603111 .. 54604485 (+)
Sequence length605
RNA-Seq ExpressionTan0020536.1
SyntenyTan0020536.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGAAACCGGATGGTTCGGTTCGGTTTTCGGTTCACGAACTTGAAAATCCATAAAAACCGAACCGATCATACACTTACTTTACAGTTTTCAGCCCAACCCATTTAATTTATATTTTACTCAAATCTTTTCATTTCAGCCCAGCCCAACATGTTTCTCTCAATCTTTTCATTTCAGCCCTGCCCAATAGATCCAATATGTTTCATCTCACCAGTCACCTCAGCACCTCACGTTTCACAATATCTCAAAAACAAAAACCAAATCTTATTAACTTAGGGTTTCTCGACTTCTCTTCTTCTCCACGACTGACGCCGCTTGAAGGGAACCTGAAGGCTGCCGCTGAAGCTCGATTTTTGCCGGTTGCAGCAACCATTTTGCAGCAGCCATCATTTTCTTCTTCTCCTGAAGCACGATTGACGTCGTTTCTTCTCCACGAGTCCACGATTGGAAGTGCGAGGTATTTTTTCATTCTTTTTCTTCTTCTTTTTCTTCTTCTGTTCTTCTGAATTGTGCAAGCTGCAAGGTTTCTTTTTCTATTTCAACCTCTCTTTACATTTAACTTCTTACTTTTCTTTACCTTCCATCGAACCTATATTTTCAGTTTGTATTGTTTTCTGAACTTTTTATATTAGATCATATTGATTTAATAATTTCTGGTAGTTGATGGCTAACATAAATGTGAAAAGCATACTAGTTAGCTTGTATGAAGATCATGTTAATGGTTTCTTAATTGTTTGTTCATCGTTTAAATGAATGTATGGAATTTGGATCTTTATTTTTTTTTAATTCAACTTGCTGTCGACAACGGGACAAGGCGATACAAAGGGCCAATGGTGGCGCGATGAACCGGTCGGCAGAGCCAACAACTCACAATGTGCCTTTTTTTCACAACACATAAACTCTCAAAAGTTTCATTCACCAACCATTGATCTGTGTATCTTCGTCTTCTTTTGCCAACCCCATTTCCCATCCCATCTTTCCTTTAAATCATACCAATCACAATTAACAAATAAAAACAGATCCAACTCCCCCTAAACAAAAATTTTTCAAATTTGAAACTAACTATTCTTCTTTCTTTTGCTCGACAACCACGAGAAACACTCTAAAAATCTCAATTTTGTAGGAGAAATTGGAATGAAGATGACTTTTTGCAATCTATTATTTTTTTTTCTTTTAATGCACATCATTATTCTTGTATTTATTATTCTATTTTGTTTTGAAAAATAGTGGTTTACTATGGAGGGTGAAAGTCAAGATACCACAAGTCCAAACATAAAGAACAAAGAGAAGAAAAAATCACCACCCACCTCAGAACAAACACAAACTGCAAAGAAAAGCAAACCAAGCAATTCATCGAAAACTTCAGGTGCGTGGGA

mRNA sequence

GTAGAAACCGGATGGTTCGGTTCGGTTTTCGGTTCACGAACTTGAAAATCCATAAAAACCGAACCGATCATACACTTACTTTACAGTTTTCAGCCCAACCCATTTAATTTATATTTTACTCAAATCTTTTCATTTCAGCCCAGCCCAACATGTTTCTCTCAATCTTTTCATTTCAGCCCTGCCCAATAGATCCAATATGTTTCATCTCACCAGTCACCTCAGCACCTCACGTTTCACAATATCTCAAAAACAAAAACCAAATCTTATTAACTTAGGGTTTCTCGACTTCTCTTCTTCTCCACGACTGACGCCGCTTGAAGGGAACCTGAAGGCTGCCGCTGAAGCTCGATTTTTGCCGGTTGCAGCAACCATTTTGCAGCAGCCATCATTTTCTTCTTCTCCTGAAGCACGATTGACGTCGTTTCTTCTCCACGAGTCCACGATTGGAAGTGCGAGTGGTTTACTATGGAGGGTGAAAGTCAAGATACCACAAGTCCAAACATAAAGAACAAAGAGAAGAAAAAATCACCACCCACCTCAGAACAAACACAAACTGCAAAGAAAAGCAAACCAAGCAATTCATCGAAAACTTCAGGTGCGTGGGA

Coding sequence (CDS)

ATGTTTCATCTCACCAGTCACCTCAGCACCTCACGTTTCACAATATCTCAAAAACAAAAACCAAATCTTATTAACTTAGGGTTTCTCGACTTCTCTTCTTCTCCACGACTGACGCCGCTTGAAGGGAACCTGAAGGCTGCCGCTGAAGCTCGATTTTTGCCGGTTGCAGCAACCATTTTGCAGCAGCCATCATTTTCTTCTTCTCCTGAAGCACGATTGACGTCGTTTCTTCTCCACGAGTCCACGATTGGAAGTGCGAGTGGTTTACTATGGAGGGTGAAAGTCAAGATACCACAAGTCCAAACATAA

Protein sequence

MFHLTSHLSTSRFTISQKQKPNLINLGFLDFSSSPRLTPLEGNLKAAAEARFLPVAATILQQPSFSSSPEARLTSFLLHESTIGSASGLLWRVKVKIPQVQT
Homology
The following BLAST results are available for this feature:
BLAST of Tan0020536.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0020536.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0020536.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0020536.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0020536Tan0020536gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0020536.1-five_prime_utrTan0020536.1-five_prime_utr-LG11:54603111..54603306five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0020536.1-exonTan0020536.1-exon-LG11:54603111..54603566exon
Tan0020536.1-exonTan0020536.1-exon-LG11:54604337..54604485exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0020536.1-cdsTan0020536.1-cds-LG11:54603307..54603566CDS
Tan0020536.1-cdsTan0020536.1-cds-LG11:54604337..54604385CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0020536.1-three_prime_utrTan0020536.1-three_prime_utr-LG11:54604386..54604485three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0020536.1Tan0020536.1-proteinpolypeptide