Tan0019500.1 (mRNA) Snake gourd v1

Overview


Name	Tan0019500.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	light-regulated protein-like
Location	LG07: 2556681 .. 2561974 (+)
Sequence length	408
RNA-Seq Expression	Tan0019500.1
Synteny	Tan0019500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCTCTTCTTACCATTGTTGTTTCTCCCATTCTTCCCTCAACACCTTCTAAGAACCTCTCTCATTTTCCCTCTTCTCCCTCGATCTCAATTGGCTCTCTCTCCTCGCGCCGCTCGACAATCAAACCAACCGCTGCAGTCGCTTATGACACTTCAGTGGTTGATTATAGCTCTGTTATCTCGTAAGTCATTTTCTCTCACATCACTTCTCTTTTTGTATTGAACTTGAATGTAAACCACTCATCTCGATATCTTATTAACAGGTAGCGATACAGGTAGGATGACAAAAAAAATATTTATTATAACTTTGGTATATCCTGACTTTTAATTAAGACTATATCTTTTTAGTTGCTATACTTTAAAAAGTTTCTTTATGGATTCTAGACCTTCAATTTCGTTGTTTCAAGATTATGTGATGAGCTAAATTTGAGTAGTTTTAAGAGGTGTTTGATGGTATAAACATTAAATTTATGCGGTTAAATGGTAATTTATATGTTTTTTAAGAACTTTAAAATATAAGAACTAAACTCTCCCAGTCAATGAAATATTTTTATTTTTTATAATAATTACTTAGATTTTAAAAAGTGAACATCCACAACATAATCCTAAGATTTGTATATAGCTTTGCTAAAACTCATCGGGTCCTTAAAGTACAAAACTAAATAGACACTCTTTATCTAAATCTATACTTTCTTTAAAATTATAGTTTTATCAAAAGATAAGAAAATATACGATTTTAATTTTGATTATAAACTTGTGCTTTTTTTCCAGTTTAACCATAATAGAGGGTGAAAAATTAAGTGATCAACTTTTAAGACAATAATTTGATAGGTTAAATTATAAGTTTTGTCCCTAAACTTTTAGATTTGTATCAGATAAGTCCATAAACTTTAAAAAGTTTCTAATAAGTCCTTGAACTTTTGATTTTGTATCTAATAAGTACTTGAACTTTAAAAAATGTCTAATAAGTCCTTAAACTTTCAATTTTGTATCTTTTAAGTTCTTTAACTTTGAATTTTATGTCTAATAGATCATTGACCTAATTGACATTTTAAAAAATTCATGAACCTGTTGGACACGAAATTGAAAGTTTAATATGTTTTTAGACACAAAATTCAATTTTATGTTTAATAGATGTGTCAAGAACTTGTTAGATATAAAATTGAAAGTTTTCAGGAGCCTATTAGATACAAAATTAAAAATTCGAAAACTTATTAGATACAAACATAAAAGTTAATCGATATCTTATCCATTAAAGTATGTTATTTGATAGCAGAGTTTCTTGCAGAAGCATGTGAGACAATCGGTGGAGAAGCGTGTTGGGGTAATAATATATTTCCAGAAGTGAAGCTTCAGCCTCCTTCACAAGCCGCAGTTGCTGCTTTGGAAGAGATTGATAGAGAATATCTTGATTATGCAGCCCATTCAAAGACGTACGCATATCCCTAATTTTATTATTATTATTATTATTATTTACCCTTTTTAATGTTCATCTTAATGGAAATATTCTCAAAAAATTGAATTTTTAGGTTTATACTTTCAAATTCTGACTTGATTAGACATAAAGTGATGTGACTTTTTTACTAGTCAGATTTTGTGTTTTCTTCTTCAAACCACATAATCATTGATGGGTAAAAGCTTTTATTGATTCAACATACAAAATCTTACTGACTTGACAACAAGGTTCGTATATTTTAAAATGATTTTCAATCTTTTGTATATTATTATTAGGATTAAATAAGTTATTGTAGTTTGAGTTTTGTCGTATTTTAAGCTTTATTATTATATTTAAAGTTATTTATACTAGAGTTTAAACCTAAGATTTGAGCGAGGATTGGAGACATATTAACCACTAAGCTAAAAAAAAATTTGTGTTTTAATTTGATTTTTCCTATACATATTATATAAAGTAAAAAGTTAGAAGGGGCTCGAGCTCCCGGACCTTAACTAAATCTGCCCTTGTTTGAAAGTATAGTGACCAAAATAGAACAATGCTCAAAACATATGACTAAAATGGTATTTTAACCTATTATTTTATGTTCACTCCCTCAAATATTGTCCAGTCTATTTTACCACCACAAAATTTAAAAAAAAAAAAAAAAAAATCAGTGGTTGCACTCAAGTTTTTTCTTATTATCAAGCACAATTGTTCAATTTGACTGCATTTAAGTATTGTACAATACAACACACTTACAACAAAAAAAAAAAAATCATTATAAAAAATTATAAAACTAATATGGTAAATTAGACTCCACAATATCCAAATTTTTTCCTTATTATTTTAGTTAGAAAAGCACATTGTACTTTCATTAAAATAATTATTCATTCCAAATTTACCATGTAATGATTTGGTTTTTAAATTTAAATTTTATACTAATTTTGTTAAATTATAATGTAATTTTGTAAGCACTTGAATTCTCTTGCCTCATCATTGCTTTCCTACGCACGACTTCATTTTTATATACGTGAAATTTTTTACTTTTAGCTTCTTTTGCTATCCATTACAAATTATCTTATTTTTATTTACCTGAAAGCGGATAATTATTGATGTAGCCTAAATGAGACTAAAGGAGATAATTCTCCAAGAATCAATCAAGGACCTTTATTAGAATGAAAGTTGTGTAGAATACATGGGAGGGATTCTCTATTTATAAGGGATTAAAATACAAATGAGGGTAAAAAAGATTAACCTAGAGAATTTACTTAAGTTTTACCCTAATCCTACCTTCATCATTCTATCCCTCCAAAAAAAAACTCGTCCTCGAGTTTTAAAAAGAAAATGGAAACAGAAGAAAACAAACAAAATAGAAACAAGCTTCATTCGATGGTTGCCAAATACTCCAACTGAAAATTGCTTTCTGAATTCATCAACTTGCCAACCCAGTTGGTCATTGCTTATCATCCTGAAAAATAATTCTTGAAATGCAAGTTCTTGAGTCAACTGCTTGTGGTACTGCCACAATTCCTCCAAATACACGAACTTGTTGACAAAAATAATTTGCAAAAGAGCAGACATGTGAAATTTGTGGAAGGTTTTCTTTAAACTCTCTCGATTTGTCGGCCAAACCAAAGAAGAAATTCTTGGTCCTTTAACTTCCTCCCCAATGATAGAACGTTTTCCAAAATGACTTTCGAGAATTTGAGGTTCCCAATTCAATAATTGCAACTCAAGCAAAATTTTCTCATGTAATAAGCCAACATTGGATGTTTGAGAGAATTTTCTTGTAAACCCTTTTGAAGTTTCCAATTCAACCATGTTGATTTTATTTGTAATTCTTCCAACGTTGACCTCACGGGTTTCGACACAATTCTCCTCAAATTCAACTTCATGGGTTTTGATTTCATAGTTCTCCACCCCTAAGGTGTCTTCCATGACAGTAAAAAGTTTATCCAAACTAAATAAAATTTCATCCTCACCGTCAAAATATTCAATGAAATTCAAAAGAAATTCATCATCTGTTTCATTTGAACTCATCTGATTGTTGTGAGAAATTGGTTTGGCTTCCTTCTCATTTTCCTTCTCAATTTCTTGTTCTGTTTGTACATATTCTTGAAAAATTAAAGAACTATGCCCACTGGAGTCTTGCTCTTCAACTTCAAAGAACAATTGAGCCAAATAAAAAGGAGAGTCATCAACTGTCTCTATCAATTCTTTTTCAACTTCATCTTCCTCATCAAAATAATTTTCAAATTTTAGAAAACATTCCTCTTCTTTGCTTAAAAATCAAAATTGTTAACATCAAATCCATGAAAAAATTCTTCTTCTTTGCTGGAAAATTTGGAATTTGGAACCAAGAAACCTTCATTTTGACATTCTTGGAGTTTATCATGATGAAAAGGGTTTCTAATAAATCTTGGAAGGTCGGCTTTCTGTTTTTGCAGCATTTCTTCTTGATCATCTCCACGATTTTGGTATATATCTCCATGGTAGAAATCTTCTCTTTTCGAACATTCATCATCTTGATTCATGAATCTTGAAAATTGATGTTCAAGAGGTCTTCCCGCTATATTTTCTTGAATCTTTATCATATGATCCGTGAATTCTTCTTTGCGTTGAACTTGTCTTCCTTGAATTTTTTCCAAACGACGTCGGATTTTATCCATTCCCTTTTGAAATTCCTCCCAATTCATGGTTTGATCCGAATATTGATGTTTTCTTGAAAATGTTTCAGCCTCTGAATCACTTTCTAAATCATCCAAGTCCAAATTCTCACATCGATTTCTTGAAAAACTTATTTGATTAGATCGTATAGCTCTTTCTTGATAATATCGGTTCGTTAGTTTGTCCCAAACTATATTGCAATCTTTGTCGGAATCGCTAGAATCACTAGAATCAAAATTCCAATGCGGATCTTGATTGATTCTTTGATAAAATCGAGCATGAGCAACGTTGTGATGTTGAAATTCCTCTTCCGAATCACTTGAATCAAAATTCCAGCAATGATTTTGAGAGTATTTTTTACTTTCTTGCCCATACCAACTGCTGTATTTTTTCTTGGTCATCTTCTTTGAACGGTAATTATTCATTCTTGCAAATTCTTGGAAAATTCTTCAAGTTTCTTGAATCTATAGGGTTCCCCCTAAATAAGGATGTGTTGTTTGGCAACGAGCACAACTCACGAAGCTCCCTCTTGCGATCGACGTCACCAAGAGTTTTCCGGTCTTCCACCGGCGGCAGTCAACGTTGGCCCAGGCGATTGCTCTGATACCAAATTGATGTAGCCTAAATGAGACTAAAGGAGATAATTCTCCAAGAATCAATCAAGGATCTTTATTAGAATGAAAGTTGTGTAGAATACATGGAGGGATTCTCTATTTATAAGGGATTAAAATACAAATGAGGGTAAAAAAGATTAACCTAGAGAATTTACTTAAGTTTTACCATAATCCTACCTTCATCAATTATCCTATCAAATTCTTGTTTACACTTTCATGAAATTTTTTCCAGTAGAAACTAAATTGAATTATAACTACAAGGATTGAATTATTAGTTCTTTTCTTCCCTTATAAAATGATGGGTTAAATCACTGCAAATTTCGAACTAAAGATTGTTTAAATGGATATTTCAACTGACGATTCTTTTTCTGAAAATGCTGCATGTTTTGTTTACACTTAAAAATCTGTGCACTGCCTTGGAGTTTGGAGTAATTACCACTGTTTACTGAAACTGTCATTATTATTATTATTATTATTTCATTTTTATTATTATGTGCAGCGTTTTCCCAGGAGAGGCTTGTGATGATCTTGGTGGAGAATTCTGTGGAGCTGAGTTTCTAAATGGCGTTTTCTAA

mRNA sequence

ATGCAAGCTCTTCTTACCATTGTTGTTTCTCCCATTCTTCCCTCAACACCTTCTAAGAACCTCTCTCATTTTCCCTCTTCTCCCTCGATCTCAATTGGCTCTCTCTCCTCGCGCCGCTCGACAATCAAACCAACCGCTGCAGTCGCTTATGACACTTCAGTGGTTGATTATAGCTCTTTTCTTGCAGAAGCATGTGAGACAATCGGTGGAGAAGCGTGTTGGGGTAATAATATATTTCCAGAAGTGAAGCTTCAGCCTCCTTCACAAGCCGCAGTTGCTGCTTTGGAAGAGATTGATAGAGAATATCTTGATTATGCAGCCCATTCAAAGACCGTTTTCCCAGGAGAGGCTTGTGATGATCTTGGTGGAGAATTCTGTGGAGCTGAGTTTCTAAATGGCGTTTTCTAA

Coding sequence (CDS)

ATGCAAGCTCTTCTTACCATTGTTGTTTCTCCCATTCTTCCCTCAACACCTTCTAAGAACCTCTCTCATTTTCCCTCTTCTCCCTCGATCTCAATTGGCTCTCTCTCCTCGCGCCGCTCGACAATCAAACCAACCGCTGCAGTCGCTTATGACACTTCAGTGGTTGATTATAGCTCTTTTCTTGCAGAAGCATGTGAGACAATCGGTGGAGAAGCGTGTTGGGGTAATAATATATTTCCAGAAGTGAAGCTTCAGCCTCCTTCACAAGCCGCAGTTGCTGCTTTGGAAGAGATTGATAGAGAATATCTTGATTATGCAGCCCATTCAAAGACCGTTTTCCCAGGAGAGGCTTGTGATGATCTTGGTGGAGAATTCTGTGGAGCTGAGTTTCTAAATGGCGTTTTCTAA

Protein sequence

MQALLTIVVSPILPSTPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSSFLAEACETIGGEACWGNNIFPEVKLQPPSQAAVAALEEIDREYLDYAAHSKTVFPGEACDDLGGEFCGAEFLNGVF

Homology

[Close]

BLAST of Tan0019500.1 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 46  AAVAYDTSVVDYSS----FLAEACETIGGEACWGNNIFPEVKLQPPSQAAV--AALEEID 105
           AAVA + + VDYSS    F  EAC+ IGGEAC    ++PE KL   +  AV  AA EE+D
Sbjct: 41  AAVAVEAAEVDYSSNISVFPMEACDLIGGEAC-NVQMYPEAKLSSSAAVAVSRAAAEEVD 100

Query: 106 REYLDYAAHSKTVFPGEACDDLGGEFCGA 129
           R+YL Y     TVFP EACDDLGGEFC A
Sbjct: 101 RDYLSY-DEPTTVFPEEACDDLGGEFCKA 127

[Close]

BLAST of Tan0019500.1 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-13
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 12  ILP-STPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSSFLAEACETIGG 71
           +LP +T +  LS   S+ S S  SL+S  +T      V Y++S++  S F AEACE I G
Sbjct: 27  LLPHATKASRLSSLRSNNSSSSSSLTSDPNT------VDYNSSIL--SVFPAEACEVISG 86

Query: 72  EACWGNNIFPEVKLQPPSQAAVAALEEIDREYLDYAAHSKTVFPGEACDDLGGEFCGAEF 131
            AC   +I+PEVKL     +   A E +DREY +Y +  KTVF  EACDDLGGEFC  +F
Sbjct: 87  YAC-SADIYPEVKLDTKPVSRPVASEPVDREYEEYNS-PKTVFREEACDDLGGEFCEPDF 136

[Close]

BLAST of Tan0019500.1 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-46
Identity = 112/143 (78.32%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MQALLTIVVSPILPS-TPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS 60
           MQA+L+IVV P+LPS TPS NLSHFPSSPSI   S SSRRSTIK   AVAYDTSVVDYSS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSPSIRSLS-SSRRSTIKAVTAVAYDTSVVDYSS 60

Query: 61  ----FLAEACETIGGEACWGNNIFPEVKLQ---PPSQAAVAALEEIDREYLDYAAHSKTV 120
               F AEACETIGGEACW  NIFPEV+LQ     ++AA  ALEEIDREYLDYAA SKTV
Sbjct: 61  VISVFPAEACETIGGEACWA-NIFPEVRLQASADSAEAAAVALEEIDREYLDYAAQSKTV 120

Query: 121 FPGEACDDLGGEFCGAEFLNGVF 136
           FPGEACDDLGGEFCGAEFLNGVF
Sbjct: 121 FPGEACDDLGGEFCGAEFLNGVF 141

[Close]

BLAST of Tan0019500.1 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 112/144 (77.78%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MQALLTIVVSPILPS-TPSKNLSHFP-SSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYS 60
           MQA+L+IVV P+LPS TPS NLSHFP SSPSI   S SSRRSTIK   AVAYDTSVVDYS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSSPSIRSHS-SSRRSTIKAVTAVAYDTSVVDYS 60

Query: 61  S----FLAEACETIGGEACWGNNIFPEVKLQPPS---QAAVAALEEIDREYLDYAAHSKT 120
           S    F AEACETIGGEACW  NIFPEV+LQ  +   +AA  ALEEIDREYLDYAA SKT
Sbjct: 61  SVISVFPAEACETIGGEACWA-NIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKT 120

Query: 121 VFPGEACDDLGGEFCGAEFLNGVF 136
           VFPGEACDDLGGEFCGAEFLNGVF
Sbjct: 121 VFPGEACDDLGGEFCGAEFLNGVF 142

[Close]

BLAST of Tan0019500.1 vs. NCBI nr
Match: KAG6588864.1 (Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.3 bits (477), Expect = 4.2e-44
Identity = 110/157 (70.06%), Postives = 117/157 (74.52%), Query Frame = 0


Query: 1   MQALLTIVVSPILPS-TPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS 60
           MQA+L+IVV P+LPS TPS NLSHFPSSPSI   S SSRRSTIK   AVAYDTSVVDYSS
Sbjct: 15  MQAVLSIVVPPLLPSLTPSNNLSHFPSSPSIRSLS-SSRRSTIKAVTAVAYDTSVVDYSS 74

Query: 61  ------------------FLAEACETIGGEACWGNNIFPEVKLQPPS---QAAVAALEEI 120
                             F AEACETIGGEACW  NIFPEV+LQ  +   +AA  ALEEI
Sbjct: 75  VIINYARIDLYTRVRDGVFPAEACETIGGEACWA-NIFPEVRLQASADSDEAAAVALEEI 134

Query: 121 DREYLDYAAHSKTVFPGEACDDLGGEFCGAEFLNGVF 136
           DREYL YAA SKTVFPGEACDDLGGEFCGAEFLNG+F
Sbjct: 135 DREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 169

[Close]

BLAST of Tan0019500.1 vs. NCBI nr
Match: KAA0066931.1 (light-regulated protein isoform X2 [Cucumis melo var. makuwa] >TYK30213.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 3.8e-37
Identity = 96/141 (68.09%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 3   ALLTIVVSPILPSTPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS--- 62
           A+L+I V  +LPS+   N SH    P I+ GS SSRRS IK TA+V YDTSVVDYSS   
Sbjct: 4   AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRRSAIKATASVVYDTSVVDYSSAIS 63

Query: 63  -FLAEACETIGGEACWGNNIFPEVKLQPP----SQAAVAALEEIDREYLDYAAHSKTVFP 122
            F AEACETIGGEAC   N+FPEV+LQP        AVA LEEIDREYLDYAA SKTVF 
Sbjct: 64  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 123

Query: 123 GEACDDLGGEFCGAEFLNGVF 136
           GEACDDLGGEFC AEFLNGVF
Sbjct: 124 GEACDDLGGEFCEAEFLNGVF 143

[Close]

BLAST of Tan0019500.1 vs. NCBI nr
Match: XP_016900821.1 (PREDICTED: light-regulated protein isoform X3 [Cucumis melo] >XP_016900822.1 PREDICTED: light-regulated protein isoform X3 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 95/141 (67.38%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 3   ALLTIVVSPILPSTPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS--- 62
           A+L+I V  +LPS+   N SH    P I+ GS SSR S IK TA+V YDTSVVDYSS   
Sbjct: 17  AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAIS 76

Query: 63  -FLAEACETIGGEACWGNNIFPEVKLQPP----SQAAVAALEEIDREYLDYAAHSKTVFP 122
            F AEACETIGGEAC   N+FPEV+LQP        AVA LEEIDREYLDYAA SKTVF 
Sbjct: 77  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 136

Query: 123 GEACDDLGGEFCGAEFLNGVF 136
           GEACDDLGGEFC AEFLNGVF
Sbjct: 137 GEACDDLGGEFCEAEFLNGVF 156

[Close]

BLAST of Tan0019500.1 vs. ExPASy TrEMBL
Match: A0A6J1EPG4 (light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.3e-46
Identity = 112/144 (77.78%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MQALLTIVVSPILPS-TPSKNLSHFP-SSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYS 60
           MQA+L+IVV P+LPS TPS NLSHFP SSPSI   S SSRRSTIK   AVAYDTSVVDYS
Sbjct: 1   MQAVLSIVVPPLLPSLTPSNNLSHFPSSSPSIRSHS-SSRRSTIKAVTAVAYDTSVVDYS 60

Query: 61  S----FLAEACETIGGEACWGNNIFPEVKLQPPS---QAAVAALEEIDREYLDYAAHSKT 120
           S    F AEACETIGGEACW  NIFPEV+LQ  +   +AA  ALEEIDREYLDYAA SKT
Sbjct: 61  SVISVFPAEACETIGGEACWA-NIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKT 120

Query: 121 VFPGEACDDLGGEFCGAEFLNGVF 136
           VFPGEACDDLGGEFCGAEFLNGVF
Sbjct: 121 VFPGEACDDLGGEFCGAEFLNGVF 142

[Close]

BLAST of Tan0019500.1 vs. ExPASy TrEMBL
Match: A0A5A7VMP8 (Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00270 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 96/141 (68.09%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 3   ALLTIVVSPILPSTPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS--- 62
           A+L+I V  +LPS+   N SH    P I+ GS SSRRS IK TA+V YDTSVVDYSS   
Sbjct: 4   AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRRSAIKATASVVYDTSVVDYSSAIS 63

Query: 63  -FLAEACETIGGEACWGNNIFPEVKLQPP----SQAAVAALEEIDREYLDYAAHSKTVFP 122
            F AEACETIGGEAC   N+FPEV+LQP        AVA LEEIDREYLDYAA SKTVF 
Sbjct: 64  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 123

Query: 123 GEACDDLGGEFCGAEFLNGVF 136
           GEACDDLGGEFC AEFLNGVF
Sbjct: 124 GEACDDLGGEFCEAEFLNGVF 143

[Close]

BLAST of Tan0019500.1 vs. ExPASy TrEMBL
Match: A0A1S4DXW1 (light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 95/141 (67.38%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 3   ALLTIVVSPILPSTPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS--- 62
           A+L+I V  +LPS+   N SH    P I+ GS SSR S IK TA+V YDTSVVDYSS   
Sbjct: 17  AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAIS 76

Query: 63  -FLAEACETIGGEACWGNNIFPEVKLQPP----SQAAVAALEEIDREYLDYAAHSKTVFP 122
            F AEACETIGGEAC   N+FPEV+LQP        AVA LEEIDREYLDYAA SKTVF 
Sbjct: 77  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 136

Query: 123 GEACDDLGGEFCGAEFLNGVF 136
           GEACDDLGGEFC AEFLNGVF
Sbjct: 137 GEACDDLGGEFCEAEFLNGVF 156

[Close]

BLAST of Tan0019500.1 vs. ExPASy TrEMBL
Match: A0A1S3BND3 (light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 95/141 (67.38%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 3   ALLTIVVSPILPSTPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSS--- 62
           A+L+I V  +LPS+   N SH    P I+ GS SSR S IK TA+V YDTSVVDYSS   
Sbjct: 23  AVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAIS 82

Query: 63  -FLAEACETIGGEACWGNNIFPEVKLQPP----SQAAVAALEEIDREYLDYAAHSKTVFP 122
            F AEACETIGGEAC   N+FPEV+LQP        AVA LEEIDREYLDYAA SKTVF 
Sbjct: 83  VFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFR 142

Query: 123 GEACDDLGGEFCGAEFLNGVF 136
           GEACDDLGGEFC AEFLNGVF
Sbjct: 143 GEACDDLGGEFCEAEFLNGVF 162

[Close]

BLAST of Tan0019500.1 vs. ExPASy TrEMBL
Match: A0A0A0L8G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 96/144 (66.67%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 1   MQALLTIVVSPILPST--PSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYS 60
           MQA+L+I V  +LPS+   S   SHF   P I+  S SSRRS+IK TA+V YDTSVVDYS
Sbjct: 18  MQAVLSIAVPSLLPSSTLSSNKPSHF---PLITFSSHSSRRSSIKATASVVYDTSVVDYS 77

Query: 61  S----FLAEACETIGGEACWGNNIFPEVKLQPPS---QAAVAALEEIDREYLDYAAHSKT 120
           S    F AEACETIGGEAC   N+FPEV+LQ  S   Q  VA+ EEIDREYLDY A SKT
Sbjct: 78  SAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDY-ADSKT 137

Query: 121 VFPGEACDDLGGEFCGAEFLNGVF 136
           VFPGEACDDLGGEFC  EFLNGVF
Sbjct: 138 VFPGEACDDLGGEFCEPEFLNGVF 157

[Close]

BLAST of Tan0019500.1 vs. TAIR 10
Match: AT3G26740.1 (CCR-like )

HSP 1 Score: 77.8 bits (190), Expect = 7.5e-15
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 12  ILP-STPSKNLSHFPSSPSISIGSLSSRRSTIKPTAAVAYDTSVVDYSSFLAEACETIGG 71
           +LP +T +  LS   S+ S S  SL+S  +T      V Y++S++  S F AEACE I G
Sbjct: 27  LLPHATKASRLSSLRSNNSSSSSSLTSDPNT------VDYNSSIL--SVFPAEACEVISG 86

Query: 72  EACWGNNIFPEVKLQPPSQAAVAALEEIDREYLDYAAHSKTVFPGEACDDLGGEFCGAEF 131
            AC   +I+PEVKL     +   A E +DREY +Y +  KTVF  EACDDLGGEFC  +F
Sbjct: 87  YAC-SADIYPEVKLDTKPVSRPVASEPVDREYEEYNS-PKTVFREEACDDLGGEFCEPDF 136

The following BLAST results are available for this feature:

BLAST of Tan0019500.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03200	1.1e-15	56.18	Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q96500	1.0e-13	45.83	Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1...	[more]

BLAST of Tan0019500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531712.1	1.2e-46	78.32	light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928578.1	1.7e-45	77.78	light-regulated protein-like [Cucurbita moschata]	[more]
KAG6588864.1	4.2e-44	70.06	Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAA0066931.1	3.8e-37	68.09	light-regulated protein isoform X2 [Cucumis melo var. makuwa] >TYK30213.1 light-...	[more]
XP_016900821.1	2.5e-36	67.38	PREDICTED: light-regulated protein isoform X3 [Cucumis melo] >XP_016900822.1 PRE...	[more]

BLAST of Tan0019500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPG4	8.3e-46	77.78	light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 ...	[more]
A0A5A7VMP8	1.8e-37	68.09	Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4DXW1	1.2e-36	67.38	light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ...	[more]
A0A1S3BND3	1.2e-36	67.38	light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ...	[more]
A0A0A0L8G9	1.0e-35	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1	[more]

BLAST of Tan0019500.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26740.1	7.5e-15	45.83	CCR-like	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 1..127 e-value: 1.9E-38 score: 131.7
IPR009856	Light regulated Lir1	PANTHER	PTHR36762	LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC	coord: 1..135
None	No IPR available	PANTHER	PTHR36762:SF3	LIGHT-REGULATED PROTEIN	coord: 1..135

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0019500	Tan0019500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019500.1-exon	Tan0019500.1-exon-LG07:2556681..2556857	exon
Tan0019500.1-exon	Tan0019500.1-exon-LG07:2557962..2558116	exon
Tan0019500.1-exon	Tan0019500.1-exon-LG07:2561899..2561974	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019500.1-cds	Tan0019500.1-cds-LG07:2556681..2556857	CDS
Tan0019500.1-cds	Tan0019500.1-cds-LG07:2557962..2558116	CDS
Tan0019500.1-cds	Tan0019500.1-cds-LG07:2561899..2561974	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0019500.1	Tan0019500.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast