Tan0018182.2 (mRNA) Snake gourd v1

Overview
NameTan0018182.2
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 16866551 .. 16869996 (-)
Sequence length2542
RNA-Seq ExpressionTan0018182.2
SyntenyTan0018182.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCCTCTTTTTTTCGTTTAGGGTTTTCACGCATTTTTCCCCAAATCTTTTCATCTTCTCACTCATTTTCTCTCTAGGGTACGATGTTGCTACCACTTCTTCTTCTGAAATTTGTCCATAAAGATGGCGATAATTGGTTGTTGTTTGTTTGTTACCTTGTAGAGTTTAATTTCGTCCACGATAGTCAAAGAATCACTCACTTCGGGCTTTCCTTGCAGATAAGGTACATTCCATTTTCACTTTTGCAATGGCTAGCTGAATCAGCGATGGTCCTTTCCGGAGGCTGACAAGGATTTAAAATCGTTCGCTTTTCAAATAATGTTTGTTTCAGAGCTCAGACCAGTGAAGACGACGATCGAATTGAGATTTGAAGCTTCGGTTCTTGGCAATTGATATGCTTGTGATCTGTAACTTATAATTTGTTTTTGTTGTTTGATTTGTTCTTGATCTATTTCCAATGACAGCTTCAACCCTAGCAAGCCCTCATTGGTGGCGACACGAAGGATCCCTGTGTGCTGACTTGTAGCAGCAACGACAAAAGAAGTCATAAAACATAGCTCACAAAATCCATGATAAAAAGATCAAATAGATCGCAAAGAGGGAGAAAAAACTTATGCGACCTGGATTCGAAGGTCGCAAGGAAGGTTTCATCAACAAAAGCACATCATAAAGTAAAGAGAAGTAAGTTTAATCTTTGCAATTACTGTCCCAGTTTTGCTTCTTTGCTCGAGGCGGAAAAGAAATTTGCTCATGATGTCAATCATCGTATTCTCATATACTTTATTCATATCCTTGATAATCTCAGGGTCATATATGTTTGGGGAAGATATTTTAACATGAAAATCTCCAACCCAATTCCACAATCAGATCAGTTATGTTTTGTTGGAAACTTTGTAAATTTATAATCTATAAATATAGTATTAAGAGAGGATTCTTTAACCCAAGTTTATTTTGCTCACAAAATAAAAAGTATTTAGATTAAATCATAAGTTTACGTCTAAAGTGTTAAATAGGTGGTGTTTGAACTTTCAATTTTATTTTAAATTTTGTTTTTTCTAAAATTAAATAGTTGAAATTTGTTCATTCTTTTTTTCTTTAATTTTTTTTAATTCGAGGTTTATTAGAGATAGAATTGAATTAAAACACTACAATTTCTTGTATGATAATTGGCAATGGTAATATTTCTACTTGCATTTCTTATGATAAAACTCTAAAGTGCTAAATTTAAATGAGGGTTGTAAGTTAATTTCTTACTATGAAAGGACAACTCAAGGATTTTTTTTGTAAGCTTTTTAAATCAAATATGAGATAAACTCCTCAAGGGTTCAAGGATTTAAATTCTCTAAAATGTAAATCTAGTCTAAATTCTCTAAGATATTAATCTAGTCTATATATCCATATTTGAATCTTCAAATAGGTGCACAACTTGCATCTTCACATGTTACTAGTTTACATCAATTAGCTTAGCATATCACTCTCATCGACGGTTTATGAAACAGAATGTTGATTCAAGGCCTATTGGTTTCTTGATACATGTTGTTGGGCAATCACTGTAATGTTTGTGAAAACACGATTGGGTTCGAAAACCTTGCTCTTTTTCTTTTCCCTGACATATTTTCATTCCTTTGATGTTTGACCTCTAATGAAGCAAATCAATGTAATGTTTGTGTTCGAAAGTTCTTCTCAGACTCTAGAGAATAAGATATTTTGTCATTTCATTTTCCTTTTCTTTTGGGTGCGTTTAATATTTTTTGTGCAATGCTAAACACATTTCTTTCTTTTTTCATATGCAATTGACTCATTCTTGAATCTGAAATAAATATAGAAACTTTATACTTTAGAATATGTTGTTTTGAATATTCAAGTTAATTTTTTCCTTATTAAATATGTGAATATTTATTCCAGCAAGCACTACCTTTCCTTGGTTATCTCCTCATCTAGGGTTGGAGTTCATTCCAAATAGGAGACATGTATTATGTGAAACTAACAGCTGCCTTGCAATTTGAGCTTCTCTTTCATTACAGTCGGAGCTAAAGAGAGCCACTGCCCATTTTCAATACTTCGACCACCTTGCTCCATGAGTTTTTCAGGTAATTCCTGAGGTATTGTTGGCTTTTAACTGAGTGCTTTCGAATCCAATTGTCGCCTAAAACTGGTCCTAATTCACTGTCTTTCACTTTCTGAACAATGTATCGACCATTGTTCATCAGAAACACAGAGCTTAAGAAAAGATCCTTGTATATCTTCGACCTTGCTTCCAAATTGCTATCTAAAAAGCTCCATGATCCAGTCCATTTGAACTGATAACGAAGATGATGCTGCAACTCTGTCCTCGAGCTTGGTGTAATCCTGCGAGGGAAGAGTGACTTCTTCGAAAACTTGCTCAAAAGTCTGCTGCGATTTAAAGGTTGTTATAAGGTAATTCATCACACATTGAGCAATTGGATGAATATATATATAGTATTTGTGTTCCTGATAAGTTTGAGTTGTTATGTTCTTGAGTTTAGCTTTAATTTTATATTTCATAGGCATCCAATATATATAATTGTTGCTCCATTATTTGTGTATGCAATTTGAACTTCTGTTTTATTCTCAGTTCGTTGAATGTGTTCATTGAGTGAAATAAACTTGTTTTGCTTGTGCATGTAATTAACATTTGATAGAACTTCAACATTAATGTTTAACCCCAACCCTTGTGTATTTGAAGTTAGTGGGTGGTTGGGAAGAATGGTTTGTTTTTGAAGTGTTTCTGATGTTAAAACAGGTCATTGAAATTTTCGAAAAGTCCTAGTAGCGTTGTTATCTTTGCGAAATTTTCGAGTGAACAACGTATCTTAAGTTACGCTTAAGTTAGGTTCACTCCTGAATTTAGGGTCGTTACACTTTGCATGCTTCTTAGGATTAGCGTGAGGTTACTTTCCTTCACTATTCGGGATGTAAGAGAGTTAGTGTAGTAGGAAGATGGGTAGTCGATGATTCGAGATCGTTGTGTTTTAAGAGGGGTTGGCATGATTGAGTAAATTCACTTGTTGCATGTTTTAGAGTTACGAATTATTAGAGGTAGGTTGCTTACTTAGTATGTTTATGCTCACCCTTGTTGCTTAATGTTGTGTTTTGTAGGTAATACTCAACTACTTGGCGGGTGACAAAGTGGTGTTCTTGAGAATTATGGTGACATTTTCAAAGTTTTGGTCATAATGTTGCCAATAAGTTTCATGTTTAAACCATTTACAGTGTGTTAGGTTAATGAATGTAAAGTTCTCTTGTATTGTAAACTTGTTTGAAGTGTTAGTTGAGTTTATGGCTTAGGATCGTTACAATAGTTCTTATAATTTTTGAATTGTTGACATGAGGTTTGATAAGTTCTTGTAATTTTACAATTGTTCATGAGCTTACGTTCAATATAATTTATTGGAATGCAATGCAGAAAATTCAGTGATTTTAGG

mRNA sequence

GATCCTCTTTTTTTCGTTTAGGGTTTTCACGCATTTTTCCCCAAATCTTTTCATCTTCTCACTCATTTTCTCTCTAGGGTACGATGTTGCTACCACTTCTTCTTCTGAAATTTGTCCATAAAGATGGCGATAATTGATAAGGTACATTCCATTTTCACTTTTGCAATGGCTAGCTGAATCAGCGATGGTCCTTTCCGGAGGCTGACAAGGATTTAAAATCGTTCGCTTTTCAAATAATGTTTGTTTCAGAGCTCAGACCAGTGAAGACGACGATCGAATTGAGATTTGAAGCTTCGGTTCTTGGCAATTGATATGCTTGTGATCTGTAACTTATAATTTGTTTTTGTTGTTTGATTTGTTCTTGATCTATTTCCAATGACAGCTTCAACCCTAGCAAGCCCTCATTGGTGGCGACACGAAGGATCCCTGTGTGCTGACTTGTAGCAGCAACGACAAAAGAAGTCATAAAACATAGCTCACAAAATCCATGATAAAAAGATCAAATAGATCGCAAAGAGGGAGAAAAAACTTATGCGACCTGGATTCGAAGGTCGCAAGGAAGGTTTCATCAACAAAAGCACATCATAAAGTAAAGAGAAGTAAGTTTAATCTTTGCAATTACTGTCCCAGTTTTGCTTCTTTGCTCGAGGCGGAAAAGAAATTTGCTCATGATGTCAATCATCGTATTCTCATATACTTTATTCATATCCTTGATAATCTCAGGGTCATATATGTTTGGGGAAGATATTTTAACATGAAAATCTCCAACCCAATTCCACAATCAGATCAGTTATGTTTTGTTGGAAACTTTGTAAATTTATAATCTATAAATATAGTATTAAGAGAGGATTCTTTAACCCAAGTTTATTTTGCTCACAAAATAAAAAGTATTTAGATTAAATCATAAGTTTACGTCTAAAGTGTTAAATAGGTGGTGTTTGAACTTTCAATTTTATTTTAAATTTTGTTTTTTCTAAAATTAAATAGTTGAAATTTGTTCATTCTTTTTTTCTTTAATTTTTTTTAATTCGAGGTTTATTAGAGATAGAATTGAATTAAAACACTACAATTTCTTGTATGATAATTGGCAATGGTAATATTTCTACTTGCATTTCTTATGATAAAACTCTAAAGTGCTAAATTTAAATGAGGGTTGTAAGTTAATTTCTTACTATGAAAGGACAACTCAAGGATTTTTTTTGTAAGCTTTTTAAATCAAATATGAGATAAACTCCTCAAGGGTTCAAGGATTTAAATTCTCTAAAATGTAAATCTAGTCTAAATTCTCTAAGATATTAATCTAGTCTATATATCCATATTTGAATCTTCAAATAGGTGCACAACTTGCATCTTCACATGTTACTAGTTTACATCAATTAGCTTAGCATATCACTCTCATCGACGGTTTATGAAACAGAATGTTGATTCAAGGCCTATTGGTTTCTTGATACATGTTGTTGGGCAATCACTGTAATGTTTGTGAAAACACGATTGGGTTCGAAAACCTTGCTCTTTTTCTTTTCCCTGACATATTTTCATTCCTTTGATGTTTGACCTCTAATGAAGCAAATCAATGTAATGTTTGTGTTCGAAAGTTCTTCTCAGACTCTAGAGAATAAGATATTTTGTCATTTCATTTTCCTTTTCTTTTGGGTGCGTTTAATATTTTTTGTGCAATGCTAAACACATTTCTTTCTTTTTTCATATGCAATTGACTCATTCTTGAATCTGAAATAAATATAGAAACTTTATACTTTAGAATATGTTGTTTTGAATATTCAAGTTAATTTTTTCCTTATTAAATATGTGAATATTTATTCCAGCAAGCACTACCTTTCCTTGGTTATCTCCTCATCTAGGGTTGGAGTTCATTCCAAATAGGAGACATGTATTATGTGAAACTAACAGCTGCCTTGCAATTTGAGCTTCTCTTTCATTACAGTCGGAGCTAAAGAGAGCCACTGCCCATTTTCAATACTTCGACCACCTTGCTCCATGAGTTTTTCAGAAACACAGAGCTTAAGAAAAGATCCTTGTATATCTTCGACCTTGCTTCCAAATTGCTATCTAAAAAGCTCCATGATCCAGTCCATTTGAACTGATAACGAAGATGATGCTGCAACTCTGTCCTCGAGCTTGGTGTAATCCTGCGAGGGAAGAGTGACTTCTTCGAAAACTTGCTCAAAAGTCTGCTGCGATTTAAAGGTTGTTATAAGGTAATACTCAACTACTTGGCGGGTGACAAAGTGGTGTTCTTGAGAATTATGGTGACATTTTCAAAGTTTTGGTCATAATGTTGCCAATAAGTTTCATGTTTAAACCATTTACAGTGTGTTAGGTTAATGAATGTAAAGTTCTCTTGTATTGTAAACTTGTTTGAAGTGTTAGTTGAGTTTATGGCTTAGGATCGTTACAATAGTTCTTATAATTTTTGAATTGTTGACATGAGGTTTGATAAGTTCTTGTAATTTTACAATTGTTCATGAGCTTACGTTCAATATAATTTATTGGAATGCAATGCAGAAAATTCAGTGATTTTAGG

Coding sequence (CDS)

ATGATAAAAAGATCAAATAGATCGCAAAGAGGGAGAAAAAACTTATGCGACCTGGATTCGAAGGTCGCAAGGAAGGTTTCATCAACAAAAGCACATCATAAAGTAAAGAGAAGTAAGTTTAATCTTTGCAATTACTGTCCCAGTTTTGCTTCTTTGCTCGAGGCGGAAAAGAAATTTGCTCATGATGTCAATCATCGTATTCTCATATACTTTATTCATATCCTTGATAATCTCAGGGTCATATATGTTTGGGGAAGATATTTTAACATGAAAATCTCCAACCCAATTCCACAATCAGATCAGTTATGTTTTGTTGGAAACTTTGTAAATTTATAA

Protein sequence

MIKRSNRSQRGRKNLCDLDSKVARKVSSTKAHHKVKRSKFNLCNYCPSFASLLEAEKKFAHDVNHRILIYFIHILDNLRVIYVWGRYFNMKISNPIPQSDQLCFVGNFVNL
Homology
The following BLAST results are available for this feature:
BLAST of Tan0018182.2 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018182.2 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018182.2 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018182.2 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0018182Tan0018182gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0018182.2-three_prime_utrTan0018182.2-three_prime_utr-LG04:16866551..16866876three_prime_UTR
Tan0018182.2-three_prime_utrTan0018182.2-three_prime_utr-LG04:16867579..16867786three_prime_UTR
Tan0018182.2-three_prime_utrTan0018182.2-three_prime_utr-LG04:16867907..16869091three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0018182.2-exonTan0018182.2-exon-LG04:16866551..16866876exon
Tan0018182.2-exonTan0018182.2-exon-LG04:16867579..16867786exon
Tan0018182.2-exonTan0018182.2-exon-LG04:16867907..16869778exon
Tan0018182.2-exonTan0018182.2-exon-LG04:16869861..16869996exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0018182.2-cdsTan0018182.2-cds-LG04:16869092..16869427CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0018182.2-five_prime_utrTan0018182.2-five_prime_utr-LG04:16869428..16869778five_prime_UTR
Tan0018182.2-five_prime_utrTan0018182.2-five_prime_utr-LG04:16869861..16869996five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0018182.2Tan0018182.2-proteinpolypeptide