Tan0017497.1 (mRNA) Snake gourd v1

Overview
NameTan0017497.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 2617622 .. 2619040 (-)
Sequence length372
RNA-Seq ExpressionTan0017497.1
SyntenyTan0017497.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGTTGTAAGAAAATGCATTGTATCTACAGTAAACTGAACGCATGAAACGCGTTGTATGATCAAGTATTGCTAGTAAGAACATTTGACAATCTTCTTTTTGTTGAATTTTCTTATTTAAACAGGGGAGAAAAAGAAGAAGAAGCATGGTTTTGCCTCAGAACCGTGTCCTGAGCTGAGAGTGTGACTCGCGTGTGTAAAGGTACAAAAGTTGTTGGGATGACGATGTGATGATCCATGTGGAGCTTTTCTTGTTTGACTTTGCAGTTCAAGGATGGCGTTCTTCAATTCCAACTGAACCTTTGTATTATGCTGACTACAGTGGTCCGTACATTGCAGGTGAGGAAAGTTGGCGGTTAGAATTAGTTTTCTTTCGTGGAAACTACGGAGTTTTGATTTTGAAAATTGAAACCAATTTTGGAAACGGTTATGTTATGCCTTGTCTCTTGTGATATGGAACTTGGAACTCTATATTTGGCCCCTAAGACTGAGAACTTGCGTTAGTCTAAAAGTAACATTAGACTGGACCCTCTTGCATTTATAGTTGAAAGGTTTGTTCATTAAAGCTACTTTTGGCTTTTGGCCCATCCAAAGTGGCGCAGACAAACATGTTTTGGCTAGATACATAATTTGGCTTTAATGTATATACTATTTTTTGCCAGCATGAGTATAGCTAATGGTTAAGGCACCTTCCTTCTTTTGAGGTCGGAGGCTCAAATTCCTACCCCACATTTGTTGAACTAAATAAATGCATTTTTGCCATTTTTCAATTTCTAGACTTTCAATTTTTTTTTTTTCTTTTTGAGTTCAACAACAAGTAGGGTAGGGGAATTGAATGGTTCGAACCTTTGGCCTCTTGGTTGAGGACATATGTCTTAACCAGTGGTTGGCTAGACTTTCATCATTAAAGACAAAATTGAAAAAATGGTGGCAAGGACTTGACTATTTGTTTGTGTTTATTGCATAGGTTTGCAAAACCTAGTAGCTTTTCCTTCAACTGTTTCATATATGTGGGCATGTTTTGGCTGTTACTACAGGTGCTGGGCCATGTACTGGGGAGTAATATATGACTGCAGGCGTAAAATCGTCTCTTTGTAATGGGAACTTGATAACGAATTTACAACTACCACTGCTATTGGTCTTATTTTTGCCTGAGAAGAAAATTCCTAAAAGGTGGCTAAATTATTTAACGCCATTGACTTTTGGTATCTATTTGTGTGAACTAGTAGTTTAAAGAAGCAGCCTTTTTTTTGTTTGTTCTTACTGTTTTCCAGGTGTGCTGCTAAACAACTAACCCACCCATAAATTAGAAGTCCAGAATTTACATTTCAGAGGGCAAAATTGTCAAACATCAAGATTCTTCTATCGACATCAGCGTTATGCCGAAGATCTCGAGACACCCGGCGAAATAGGTAA

mRNA sequence

ATGGAATGTTGTAAGAAAATGCATTGTATCTACAGGGAGAAAAAGAAGAAGAAGCATGGTTTTGCCTCAGAACCGTGTCCTGAGCTGAGACTTTTCTTGTTTGACTTTGCAGTTCAAGGATGGCGTTCTTCAATTCCAACTGAACCTTTGTATTATGCTGACTACAGTGGTCCGTACATTGCAGGTTTGCAAAACCTAGTAGCTTTTCCTTCAACTGTTTCATATATGTGGGCATGTTTTGGCTGTTACTACAGGTGCTGGGCCATAAGTCCAGAATTTACATTTCAGAGGGCAAAATTGTCAAACATCAAGATTCTTCTATCGACATCAGCGTTATGCCGAAGATCTCGAGACACCCGGCGAAATAGGTAA

Coding sequence (CDS)

ATGGAATGTTGTAAGAAAATGCATTGTATCTACAGGGAGAAAAAGAAGAAGAAGCATGGTTTTGCCTCAGAACCGTGTCCTGAGCTGAGACTTTTCTTGTTTGACTTTGCAGTTCAAGGATGGCGTTCTTCAATTCCAACTGAACCTTTGTATTATGCTGACTACAGTGGTCCGTACATTGCAGGTTTGCAAAACCTAGTAGCTTTTCCTTCAACTGTTTCATATATGTGGGCATGTTTTGGCTGTTACTACAGGTGCTGGGCCATAAGTCCAGAATTTACATTTCAGAGGGCAAAATTGTCAAACATCAAGATTCTTCTATCGACATCAGCGTTATGCCGAAGATCTCGAGACACCCGGCGAAATAGGTAA

Protein sequence

MECCKKMHCIYREKKKKKHGFASEPCPELRLFLFDFAVQGWRSSIPTEPLYYADYSGPYIAGLQNLVAFPSTVSYMWACFGCYYRCWAISPEFTFQRAKLSNIKILLSTSALCRRSRDTRRNR
Homology
The following BLAST results are available for this feature:
BLAST of Tan0017497.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0017497.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0017497.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0017497.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0017497Tan0017497gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0017497.1-exonTan0017497.1-exon-LG04:2617622..2617727exon
Tan0017497.1-exonTan0017497.1-exon-LG04:2617989..2618070exon
Tan0017497.1-exonTan0017497.1-exon-LG04:2618699..2618792exon
Tan0017497.1-exonTan0017497.1-exon-LG04:2618857..2618912exon
Tan0017497.1-exonTan0017497.1-exon-LG04:2619007..2619040exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0017497.1-cdsTan0017497.1-cds-LG04:2617622..2617727CDS
Tan0017497.1-cdsTan0017497.1-cds-LG04:2617989..2618070CDS
Tan0017497.1-cdsTan0017497.1-cds-LG04:2618699..2618792CDS
Tan0017497.1-cdsTan0017497.1-cds-LG04:2618857..2618912CDS
Tan0017497.1-cdsTan0017497.1-cds-LG04:2619007..2619040CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0017497.1Tan0017497.1-proteinpolypeptide