Tan0017397.1 (mRNA) Snake gourd v1

Overview


Name	Tan0017397.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal L18p/L5e family protein
Location	LG06: 25933569 .. 25934976 (-)
Sequence length	1408
RNA-Seq Expression	Tan0017397.1
Synteny	Tan0017397.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAACAAAGGGCAGAACAAAGCAGAAGCCGATTTAGAAGCCCTAATAAATACTCAAATTTCTTGCGCTCCACTAACTTCCATGTCCACAAGTCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCTCCAATCCGGCCACCTCCTCCATCATTGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTCGCCTACTACCGCTCTAAACTCCACCGTTTTCCTCGATCCTACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAAATCGGCGTCTCCGATGTTCGGATCGATCTCGCCGAGGAGCTTTCGCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTTGGAACAGGTGCGATCTAGCCTCGATTTTTCTGTTTTGATCGGAGTTTATACGGTTCGCGATTGAGATTGAATTTAGGGCACATATGACATATGACTGATTCCTTCTCCTCCACGTCGATGAGTATACGAATTTTGACACATTTTCGATCTCTTTCTCTTTTTTTTTTTTTTCCTTCGATTAAAAATGTAATAATAATATTTTTGTAATGATTAATTAAAGGAAAACAATTGTCTCTGTGGAATTTAGCCCATTTATCTGTAGCTCTTTCACTGGGAGAGGAAGATAAAAAAGGACTTGTGTAGAAAATGAAGTGATTTTGTTTTTCCTTTTGAGTACGGAAGTAATAATCTCTCTTCGTTTCTGTACTTTTTGTTAGACGTTTAGTAAAATCGAAATGGAAGAAAAAAATGGAGTGTGATTGTTGATGTGCAGATTTGGGCTGGATGGATTGCCTAGGATCGGTAGAATCATCGACCAAGGGGCGTTCACGAGTTGAGTTGGAGGGAATTTGAAATTTCGAGTTGAAGATATAGCCAACTTGGACAGACCAAATTTATATTGGAACCCAATCCAACCCAATACTAGTAAAGTTGGTTTGTTCCAGTTGGGTCATGAAGGATGAATAAAATCCATTAAAACATGATTTGCAAGTCATGACGAGGGAGATCGATGACATTGCTAGTGTTTGGCAAGGTCGGCCAACGAAGAGATAAATGAAAAATGGAAGGTGTTGATACCAGAATTTGGATCAGCAAATTAACGATGAATTTATAATCATTGGAATTGGAATGTGTTTGCAAAATGAAAAAACTGAGCATCGAGATAACCAGGTTATAGAGGAGACAATGTGATTGGGATCAATATCCTAGGCGTATAGCAACTTGGGGACAAAGCGTCCATAATGCTAATGTTAATCCTCCGGTGGAACTCAGTCGATCTACAACAAAGAAGTGAAGTAGAAG

mRNA sequence

GTCAAACAAAGGGCAGAACAAAGCAGAAGCCGATTTAGAAGCCCTAATAAATACTCAAATTTCTTGCGCTCCACTAACTTCCATGTCCACAAGTCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCTCCAATCCGGCCACCTCCTCCATCATTGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTCGCCTACTACCGCTCTAAACTCCACCGTTTTCCTCGATCCTACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAAATCGGCGTCTCCGATGTTCGGATCGATCTCGCCGAGGAGCTTTCGCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTTGGAACAGGTGCGATCTAGCCTCGATTTTTCTGTTTTGATCGGAGTTTATACGGTTCGCGATTGAGATTGAATTTAGGGCACATATGACATATGACTGATTCCTTCTCCTCCACGTCGATGAGTATACGAATTTTGACACATTTTCGATCTCTTTCTCTTTTTTTTTTTTTTCCTTCGATTAAAAATGTAATAATAATATTTTTGTAATGATTAATTAAAGGAAAACAATTGTCTCTGTGGAATTTAGCCCATTTATCTGTAGCTCTTTCACTGGGAGAGGAAGATAAAAAAGGACTTGTGTAGAAAATGAAGTGATTTTGTTTTTCCTTTTGAGTACGGAAGTAATAATCTCTCTTCGTTTCTGTACTTTTTGTTAGACGTTTAGTAAAATCGAAATGGAAGAAAAAAATGGAGTGTGATTGTTGATGTGCAGATTTGGGCTGGATGGATTGCCTAGGATCGGTAGAATCATCGACCAAGGGGCGTTCACGAGTTGAGTTGGAGGGAATTTGAAATTTCGAGTTGAAGATATAGCCAACTTGGACAGACCAAATTTATATTGGAACCCAATCCAACCCAATACTAGTAAAGTTGGTTTGTTCCAGTTGGGTCATGAAGGATGAATAAAATCCATTAAAACATGATTTGCAAGTCATGACGAGGGAGATCGATGACATTGCTAGTGTTTGGCAAGGTCGGCCAACGAAGAGATAAATGAAAAATGGAAGGTGTTGATACCAGAATTTGGATCAGCAAATTAACGATGAATTTATAATCATTGGAATTGGAATGTGTTTGCAAAATGAAAAAACTGAGCATCGAGATAACCAGGTTATAGAGGAGACAATGTGATTGGGATCAATATCCTAGGCGTATAGCAACTTGGGGACAAAGCGTCCATAATGCTAATGTTAATCCTCCGGTGGAACTCAGTCGATCTACAACAAAGAAGTGAAGTAGAAG

Coding sequence (CDS)

ATGTCCACAAGTCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCTCCAATCCGGCCACCTCCTCCATCATTGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTCGCCTACTACCGCTCTAAACTCCACCGTTTTCCTCGATCCTACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAAATCGGCGTCTCCGATGTTCGGATCGATCTCGCCGAGGAGCTTTCGCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTTGGAACAGGTGCGATCTAG

Protein sequence

MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEKLGTGAI

Homology

[Close]

BLAST of Tan0017397.1 vs. NCBI nr
Match: XP_004140885.1 (uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 118/126 (93.65%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 127
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of Tan0017397.1 vs. NCBI nr
Match: XP_038884098.1 (uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Tan0017397.1 vs. NCBI nr
Match: XP_038884095.1 (uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Tan0017397.1 vs. NCBI nr
Match: XP_038884096.1 (uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Tan0017397.1 vs. NCBI nr
Match: XP_038884099.1 (uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Tan0017397.1 vs. ExPASy TrEMBL
Match: A0A0A0KE39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.4e-57
Identity = 118/126 (93.65%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 127
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of Tan0017397.1 vs. ExPASy TrEMBL
Match: A0A5D3BWW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00630 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 114/126 (90.48%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of Tan0017397.1 vs. ExPASy TrEMBL
Match: A0A1S4DVU4 (uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 114/126 (90.48%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of Tan0017397.1 vs. ExPASy TrEMBL
Match: A0A6J1JZ79 (uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS +QNHLLRLVLSCRKITAQV+NP TS+IIAMASSSEQEFVAYY SKLHRFPRS NFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPVYYR  VLPLFDSVRRSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 127
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of Tan0017397.1 vs. ExPASy TrEMBL
Match: A0A6J1EVG7 (uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC111436340 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWD 60
           MS +QNHLLRLVLSCRKITAQV+NP TS+IIAMASSSEQEFVAY RSKLHRFPRS NFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPV YR  VLPLFDSVRRSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 127
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of Tan0017397.1 vs. TAIR 10
Match: AT2G43310.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-41
Identity = 83/119 (69.75%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 3   TSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSK 62
           T ++HLL+LVLSCRKITAQV+ P +S+IIAMASSSEQEF+A  R+ L+RFP S +FWDSK
Sbjct: 4   THRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSK 63

Query: 63  VASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEKL 122
            ASRVGEKLGLRL+E+GV  V ID  EE+SRP+++RK VLPLFDSVRR+G+ VDG E+L
Sbjct: 64  TASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122

The following BLAST results are available for this feature:

BLAST of Tan0017397.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017397.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140885.1	1.5e-56	93.65	uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
XP_038884098.1	1.7e-55	93.55	uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]	[more]
XP_038884095.1	1.7e-55	93.55	uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]	[more]
XP_038884096.1	1.7e-55	93.55	uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]	[more]
XP_038884099.1	1.7e-55	93.55	uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]	[more]

BLAST of Tan0017397.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE39	7.4e-57	93.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1	[more]
A0A5D3BWW4	1.2e-54	90.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DVU4	1.2e-54	90.48	uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=...	[more]
A0A6J1JZ79	1.0e-53	89.68	uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745...	[more]
A0A6J1EVG7	3.2e-52	88.89	uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]

BLAST of Tan0017397.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43310.1	1.5e-41	69.75	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 1..114 e-value: 1.7E-8 score: 36.9
None	No IPR available	PANTHER	PTHR12899:SF14	F14B2.25/F14B2.25	coord: 3..123
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 3..112
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 3..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0017397	Tan0017397	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017397.1-exon	Tan0017397.1-exon-LG06:25933569..25934976	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017397.1-three_prime_utr	Tan0017397.1-three_prime_utr-LG06:25933569..25934513	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017397.1-cds	Tan0017397.1-cds-LG06:25934514..25934894	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017397.1-five_prime_utr	Tan0017397.1-five_prime_utr-LG06:25934895..25934976	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0017397.1	Tan0017397.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008097	5S rRNA binding