Tan0016851.1 (mRNA) Snake gourd v1

Overview


Name	Tan0016851.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mitochondrial protein
Location	Contig00127: 82497 .. 94300 (+)
Sequence length	1689
RNA-Seq Expression	Tan0016851.1
Synteny	Tan0016851.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTGATGAGTCGACCAATTCCTCTACCCCGCTTCTTCCCCTTATCTTTCTTTCACTATTCCTACCCCCGGGGTTGCTTGGCCGGTCTCGAACCAGCGCTTAGTAAGCTAGGCCAAGGCCCCTTGTATAGGTTGGAGCTTCAAAGCGGACCTTCTTATTAGAGAAAGGAGAAAGGGCTTTTTCACTTGCTTACTAGGGTTGGCAGCTAAATTCAGTCTTCGAGACCCCATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCCTTAGAGATAGGAGCGACTTTCTTGTGGTAGTCATTTCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGACCGCAATTGCAGGAATAGGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTCGTTTCGTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCGGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGAACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACTACCCACCTTGCAGTGTCCCGCCCCCCCCCGAAAACTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTTAACTATGACAACAGTCGCGACTATAAACAGACTCGCGACTATGGCAGGGCGGTACGCTCTGCTCTCTCGAGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTAAAAGGCGAGCACTGGAATGAGAAAGGCTTGTAGACTCGTGAGGCTGAACGACACATTCGAAAACTCAAGCGCACACTCGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGCCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAAAAGGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTCGGCCGCGCCAGTCGCGTAGGGCGACCGGACCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCTGCCCTCGGCCCGATCATCCTATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACACTTGAAAAAGCTGCTTTCAAGGTCTCGTCGCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTTTGGATCTTAGCACCCCAAAAGTCTGTCTGTACAAACGATCTAGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTCAAATAGGAAGAACTCGAAGATTCCACCTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTTCTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTTACTAAGAGAATCTCAAGTAAAGGCTTGCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGTAAAAGCGATCAGAATTCGAACACGCCGCGTTTTACTGGGAAGGATCGAACCATGGGAACGAATCTACAGGGCTATCACCTTCTTTGGCCAGATCTTCCAACCTTTTCACAATTACAGTTCACTGCGCCCCTCTACAACTCGGTAAAGCGGCTTGCTGGTTTTTCCATCATCCAATCCACAACAAATCGAATGAAACCTGGCGAAAAAGAAGTGAACACTTTGCTGAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGTACTGACGCGGAACACCAACCCAATCTCGACGAAAAAAAGCAAACTGATTGCATCAAAAACCGAGATTCGTCGACGTGAACGCACGCTTTGTCATGTTAGTGTGAGAACCTTAAATAAACTAACGATCAAGCTTTTAGATTTGTTTACTCAACTCGTAAAGGCAAACAAAAAAGGGATCCGCCTCGAATCAAAACTCTTTCTCCTTAGCACAAGCACTAAGTAAGCAAGCTACCTTTCTTTTCTACGCAACGATCTTTCTTCTCTTATGAAATTCAGAGTTTGATCGAGGGCGCTTCTCCCCAATATGAGATAAGTTGGCTATAGTCCGAACAGAACTCCAACTGGGCCAATTGCGTAATTATGACCTGAGGTAGCGAACAGCAAATGGATGGAAATTCTCCACTTAATGGCTGCCGCTTAACGCTCTGGCGCTCTGAATCTCGAAGGTCTTGGTAGGATTCTGACTTGCTGGCCCAGCCCTTTTCTTTCTTGCAACATGGCATCCCTTGCAACGTTTTGCAAGCTCCTTCCTTTGTTGAGCTCTGTCATCCCGCTCTTCGAGATCTTTCATTGGCGCAATCTTCTTTTCATTCAATAAAAAATTGCGATTGACTTTGATTCAAGATATCTCCTCCCTTTAATCGTACTTTAATCTAAGCTATTACTTCAGAGTCAGGCACGAGACGAAAGGAAGGTAAACAGGAGGCAGGCGCAATAGAAAGTTGGAGGCAGGCGGGCGATAGGCTTAGATCAGATGCAAGCAAGCTCAGTCTCAATATGCGCATTAGAGAAGGGGGGAGTGTGAGGTGGGTTGGCGCTTCGGTCAAGAGGCGGGATAGCGTCCCACCTTCCTGTCTTGACTGGTAGGCACAATCGCTTGAGTCTAGTTCTTGAGCGAAGGAATCGCTTTCAATGAAAATTTCTCTTTAGCAATCAGCCATCAGCCCTCTTCAAGCTGTCGAATATAGATAGGAGATCCACTTCGACGTTCAAGGCTGGCAGCAAGCGTAAGTGCAATCGCAATCCCTATGAATTTCATTAATTAATATCTCTCCCGCCCTCTAGCACTCTGTTATGGCGCAATCACTGACTGACGTTCTGAAGTTCGAGGTCTTAACGCTCTCCGCGCTGTCTCCTTCTGGTAATGCATGAGAGGCTGTCTTCCTTCCACCTCTCTCTATCGCCCTTCCTTCTTTTAGCAGCTCATCTCGAATCGTCGAATGTTTAGCGAATCGATCGTAATTGGTCTGACCGCTCAAGGCTTATCTCTCGATTCCCCTTTCTGGTCTCCGGTCATTGGTAGAAAGCCTTGAAATTCCATTTCTCTCCTCTCCAGCTTGGGAATACTTCTTTCTATTGGCTATATATCTTTACAATGCCAGTTCAAGCTATCTTCTGTCTCGAGCAAGAAAAGGTATGCGCAAGTGCAGTAGTTCAAGGCAGGCAGGTAAGGGCAGGTAGTAAAGGCAAGCGCATAGGCAGGGGATAGGCCTTCAATTCAAATCACGAGATTCAAATAGCGTATATAAATGGCTCGTGCATCTTTTCTTCTTTTAGACAAGTCTAGTAGCCTCTCGTAAGGAATTGTTATAGCAAGCATGAGCGGGAATGAGCAATGACTTGAGTTTCGTTCTTGAGTTCGAGCGGGGGTAGCATTCCGGTCTTAAGCAAAGCCGTCCTGCCCGGCCATATGTCCTGTTCAGTCAGTTGCATATCGGTCAGCATGATTGTAGCAATACAAATGGGTGCGGTAGACGAAGGAGCGAAGCAGCTTTCCCGATGAAAGAGGGGAAGGAGCGAAGCAGCTTTCCCGAGTTGACGAGGGGAAGGAGCGAAGCAGCTTTCCCGAGTTGACGAGGGGAAGGAGCAAAGCCACTTTACCGAGTCAACGAGGGGAAGGAGCAAAGCCACTTTACCGAGTTGTAGAGGGGAAGGAGCAAAGCCACTTTACCGAGTTGTAGAGGGGAAGGAGCGAAGCCACTTTACCGAGTTGTAGAGGGGAAGGAGCAGTGAACATGACTCTTGCAGAAGAGGAAGAAATGCGGTAAAGAGGAGTTCCAGGCGTAGGAGTTCATTCCACTATAATAGGAGAAGCAGGTGCAAAAGTCGTAGCAGTAGCACGCGCTTCCCTAGTAGCAGGAAAGGAGAATCGAATTAGTGCGCTACCTTCTCCCCAAGGCCTCCTCGGTCTTCTTGGACTTGGTTTATGTCTGATTCCACCCGAACTGCTAATGTAGGGTTTTTTGGGGTAATGGCACCGGCACACTTTTCGTCTAAATAAGTTCTCTTTCGTCTGCCGATAGTTCTGACCTGCAAAGTGGAAAATATAGGAAAGAAAACAGCGGCACACACCTTTCTTTTTACCGCTGCAAAAATTCTCATTTCTGTCAAAGAAAAAAGCACAAAACCGCGGAAAGTGCCACCCGGGTTTATAGACCAATCAACCAGGAAAGAAAGTTCCAGCTACTGGAAAACAACTCCCTCCGCCCTTGTTCTGGTTCTATATCAGACAAGACCCCTTGCCGTCGGACTTGCCTTTTAGTCATCGACGACTTCTGTATATTTGAAAGAATAAGATTCTTCAGGCTGAAGCCGCCTTATTCACCGCACTCCCTTGAATATAAATGGACGTCTTTTCTTTTTCTTTTTTAGTGGTTCTTCTTCATTTGAAACAGTTGATTCATATGCTTTTGTCTCAGCGGATGAAACAGCATATTTAGATGCAGCAGATGGGGATGCGCCTTATTCTTATCCTCTTTCTTCGGCTGCTTCAGTGAATGCACCAACGCATAAGTAAGAAGAGAGATAAGGGTTGTTAGGGGACAGGCTCACCCTTCCGTAGGGTTCCATGCTTGACGGTCAGGTAGCGGAAGTCAGGTCAATAAGGACCACAACAAGCCTCTCGGCGAGACGAGACGGGGAGTTTGAAGACACTAATCTAATACCGGGTGAAGAAGAAGAAACGAAACTCCAAAAATTCTTTATACAAATAGAGGAGGCCAAAAGAATGGGAATCATAAACAGTAAGTGACGATTCTAACTCATCCTGAACCTAGCTGGCGTCAGATTATTACTCGAAAACGGCGAGGCCAAACACGGCACTAACAGCTACAACCGAAACACAACGGCTTCCGTGGATGCATCTGTTGTTGATTCAATTGAATGCCAGTCCAGGAGTCGATTCTGATCATGAATGTCGTAGAACTATTGCATCAGCGAATGTATTCGTATCGGTAATTAGACTACTTATTATGCCAAAGGGTAGGCGTTAGACTCCTTTTATGCCACCTGGTAGGGAGTTTCATAATAGAACGTCTCCTTCGATCCCCTCTAACAGTGCGTAATTAATTGATCATCTAACACCGACACCGGCACCGACTGATTACCTTACCGGGGCTCAATGAGTGAGCACCTTTGGATCGATCCTCGGCATATAAATGACAATATGGTGGGAACTAGAAGATCGGAGAAAGAATCATAACTTCTCGCTTTCTCACGCCCTTATTAGAGTATTATCGTCGACGGCTTTCGGGCAGGGACACCAACACCTTTTGGCAACACTCGATTTTTGGAATTTTCGAACTTTGCTGCCCGATTTCTTACCCCTTTTACTCGGAATCACACTATTTGAACTCCTATAGCGTCTCCAACTCCCGTCGAGCTCACCCTTACTTCGCCTCGAAAATATGATGAATGTATCGCTGAACCGGGCGTTGCACTTTCATTAGTTAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGGTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTCATTGGTTCTACGGTTGCTAGCACTGATAATAGATTCAATCAAAGGTCGAATTCACCTCCGAACGTCTTTCGTACCAACCAGAGGGCGTGACTTACAGAACGGTCTCGAGAGGACTTCTTCGCATCGGTGAAATGAATCTCTGTGGACTGGAGGTGAAATAGAGAAGGAAAGGTAGTTAGGCGAGTAAGGAGACCTCTGACTATAATTGAGAATACGGTGGGCCTCTGCTAGGCAATCGGAGTACTACTATTATTCTATTATTCCACCAGGGCCTCCGCAGACACTTCCCCCGGCGGCTAGGCCCCTGCTTTAGGCACAGGCTTTCTCGAACAAAGGAGAATGAAAGCTAATATTTCACTGTTTTCGTTCTTACTTTTGAAGCGTAAGCCGCTTGCACAAATGCTTTTGAATCAGCTCGAACAACAAGGGTACTATGATGTTCATTCAAGTTCGATCAAATCAATGGCTCATTCATCATCATCAGAATAAGAAGACTAACTAGGCAAAACCAGGATCAGAATGGATCTGAAGCTTGGGCTTACTACGAGTCAGTCAGAGGCAGCTTTCTAATATCTCGAGCCTTTTTCCCTTTCAGCCAGCGAGAAGAAGGACCAAACCCTATCTATCGCCTCACGCTCTTCCGGGGTCAAAGCAAAAGTACAGTGGACCTCACAAGGATCGCTTCTCAAATATGCACTTCGAGCTTCACCGTTCTCCGAATGTCTAACCTTTATCTATGGTTTTGAGGTTTGGTTTTGCACCGGAGGGCTGATCGGCTTGTTGGTACGGTTAGCTTGTGATCTACGACCACCCTTGCTTTCTGCTTTGTCAGTCTGGTTAGCGCCCCTATCACGTAAGGCTTCGCTTTCTTTTTTTATCTCGATAAATTATTATTTTAATAGGGGAGAATGAATATTCTAGTAAGCGTAGGGAGCGCAGGGCTCCCCCGAGACAGGAGCCCGAGCGCAATCAAGAGACCTTATAAACATAACAAATCAAATTTGCATAGTGACCAAAATTCTATAAGAATTCATAGAAATGGCAAAGCCAGAAGCATATCTAGTAGCAGACGCAAAGAGAGCATAGCCAGGTTACATAAAAGATAGCAGATCTATATTAACCTGTTTACCCTGCAGCATCCATCAGGGGGGTATCATCAGTAGCAGGGATATCGCCAGTCGATTCAGACGCTGTTCCAGGTAAAGCACCACCCGCAGAGGTATTTACATACCTTGTTTTCTTACTGGCATATGATCTTGGACATGTCTTGTTGGCTTGATGCACCAGCAGAGCTTCCAGATTTCTGATTCTGACCATAGGGTCGATGTCCCGAAGCATGTTCAGCTGCAAGAACCTGATCTGAAGCACCCTGAGTAATAAAATCAAGATCGACCCCCTTCCCTTCGTCAACTCGGTCAAGCGGCTTCGCTCCTGCCCCTCTTTCATCGGGAAAGCTGCTTCGCCCCTTACTAAGAACAAACTTTTTTCTTTTTTTTTTAATGAAGGAATATTTTCTTTTTTGATACTGGGGCTCTTATCATACTTCTTTGTTTTCCAAGAAGATTAGATCATTAAAAAAAGGAAGTTTGCTGGGGCATCCTTTTTTTCCATTTCGCTTCTATTGTTTGGGTTTGTTTATAACCAATGTAAGTGTAAAGGCGGTCAGATGAGACTCATATGATTGTATTGTACAAGGGGGCAGTCGGTGTTATAGAAAAGAAAAAATCGAAAAAAAAATGATCAAAGAAAGTAATAAAAAAAAGAAAGAAAAAAAGACGAGGAATCCAATTTCGAATTCGGTATGGATAAAAGATCTTCCTATGTTATACTATTCAATTCTCGACGATGAATCGATTTTATAGCTCAGATATTGTTATTCATGATATTTTGATACGAAAAGATATCATCGAGATGTAATTCATCCCATTTCATTTACAGGCGAAAGATTTTTCATCTCTATGGGATCCCGAGTTATTGCGAATTAAAGAAAAATGAAACGATGTTTATTCTCAATCTTGTCGCATTTATTGCTACAGCACTGTTCATTCTAGTTCCTACAGCTTCTCAATTCGATTTCATATGTAGTGAGTTTGAATTGACCCGGTTAGCTAGAAGGTTCCTTTCGCTACCGTCCTAAGGTTCAACCAACCGTTGGTTTGCTTTAACAAGATTTCACGGAAGTGAACCCGACGCGAAGTTAGTGAAACCTGAGCGTAGCTATGTCACGTGAAGTGAAGAACCTCTGCTTCCTTTTTGAGACACCTTCTTTGATTATTCCCCGGAGCACAAGAGCTAGGGTAAACTCGTCAGCTGGATAGCTATAGTACAGAGTTTCAGGGGGGAATAACTATATCGCTTTTCCGGGGGGACCGAGAAAAAGGGAAGGAGATATGGAGCCAGTGAGTGGCAACAGGTTCAGCGGTGCTATCAAAAACAGCGTTCTATGTGTTATCAGAGCCACTCGTCCCTTCTCCTTTCCTTTCAGTCAAGGTCTAACCTCGCGTAGCTAATGAAAGGGAATACCTTAAAACAAAACCGACGAGAAGCCCTGAGAGCCAGCAAGCAAACCCCCCTGACTTTACTCTCTCTCCATAAAAAAAGCCTGCGTAGTAAACTCCTTGTTTTCTTTCCGATAGCTGCCGAGTTTTTCCAGTTTTCAAGTCAAGCGAGAAAGCAAGTGGATCAGACAAAGTCTTTCTGGTTGTCTCACCAAAGAGTACTGCGTGGCGGTATACCTGTTTGTTTGTAAAAGGTGTTTAAGGATATGGTTAAGCGAGCTAGTTGGCTCAAAACTGCTTTCTATGTTAAATGCTGTAGTGTGTCGCTTATGCGCGCCTATGGCGGGTGTTGAGATCGACACGAATCCTTACCGCATCCGATATCCCTAGCAAGGCTCGAGAGACCTCGAGTGATACCTTACTTCCATAGAAGACTAATTCGTCGTCATGACGTTCGGGCAGACAGATTAGAAGAAATGTATTTATCCATGTTCTCAGTGTCTAAGCGGATTCTTGTTCCTAAACAGAGCAACTATCAGTTTAGTAGCATTGTGGACGACCCGTCGACAGACGTCGAGAGTGTTTTGGAGAAGTAAGGTATCCTAGTTCATGACCTTTTCTTAAGGTCTGTGTCAGAACAGCCTTCCATCCCTATGGAGGTGGGCCTGAATTGGCGTCCTTTCAGGTCTTCATCTCCGGTGAAAGGTGATAAGGCCCTAGTGGGCCGGATTCCCTTCCATTTGGAAGATGTTTGCAATCGCTTTATGGGATCGCGCGGTTCTTTATGTTGGCTCATTGCTTGCATGATCTTTCTTTTATCTTGTTTTCCCTCTGGACTACTTGACACACATGCGCTGAGTTACTTATGAAAAAGCCGTCTACTCATTTCATTGTTAGCGAGTAGGTGGCAGCTAAATTGAGCCTCGTGTCTCCATCGGGGTACCCCACCTGACCGATATATGAGGCCCGCGGACTCACGTTTTACCCTTTAGAGTTATGGTTGGGCTGCGGGATACTTGGGGGGTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAACCAAACAAGCGAATAGAAAAGTGAAAATACTCGACGCCAACAGAAAATTTCTTTTTTGAAGTATACTGATCTTGAGCCTACCCGAGCGAAAGCGGAGTCTCCAGAGATCAATCAACCGGGCGCCTCCAAAGCAGTATCCAAGTTGTAATAAAAGAAACAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGGTAAGGTGCGCTGGGCACGAATCCAGTAGCCAGTTTCCCTAGCAGGCAGGTCACACGTACTATAACAATCATTTGAAAAAATCAAATAAAATAAACAAACAACAGACTAACTATACTAGCAAACCAAGAAAGCACAAACCTGACTAGATAGGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCTAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTGTTAG

mRNA sequence

ATGGGCCTGATGAGTCGACCAATTCCTCTACCCCGCTTCTTCCCCTTATCTTTCTTTCACTATTCCTACCCCCGGGGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTCGGCCGCGCCAGTCGCTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCCTATTACTTCAGAGTCAGGCACGAGACGAAAGGAAGGTAAACAGGAGGCAGGCGCAATAGAAATGCCACCCGGGTTTATAGACCAATCAACCAGGAAAGAAAGTTCCAGCTACTGGAAAACAACTCCCTCCGCCCTTGTTCTGGTTCTATATCAGACAAGACCCCTTGCCGTCGGACTTAATCATAACTTCTCGCTTTCTCACGCCCTTATTAGAGTATTATCGTCGACGGCTTTCGGGCAGGGACACCAACACCTTTTGGCAACACTCGATTTTTGGAATTTTCGAACTTTGCTCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGGTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTCATTGGTTCTACGGTTGCTAGCACTGATAATAGATTCAATCAAAGGTCGAATTCACCTCCGAACGTCTTTCGTACCAACCAGAGGGCGCGAAAGATTTTTCATCTCTATGGGATCCCGAGTTATTGCGAATTAAAGAAAAATGAAACGATGTTTATTCTCAATCTTGTCGCATTTATTGCTACAGCACTGTTCATTCTAGTTCCTACAGCTTCTCAATTCGATTTCATATGTAGTGAGTTTGAATTGACCCGGTTAGCTAGAAGTTTTCAAGTCAAGCGAGAAAGCAAGTGGATCAGACAAAGTCTTTCTGGTTGTCTCACCAAAGAGTACTGCGTGGCGTGTGTCGCTTATGCGCGCCTATGGCGGGTGTTGAGATCGACACGAATCCTTACCGCATCCGATATCCCTAGCAAGGCTCGAGAGACCTCGATGTCTAAGCGGATTCTTGTTCCTAAACAGAGCAACTATCAGTTTAGTAGCATTGTGGACGACCCGTCGACAGACGTCGAGAGTGTTTTGGAGAAGTCTTCATCTCCGGTGAAAGGTGATAAGGCCCTAGTGGGCCGGATTCCCTTCCATTTGGAAGATGTTTGCAATCGCTTTATGGGATCGCGCGGTTCTTTATCCTACCCGAGCGAAAGCGGAGTCTCCAGAGATCAATCAACCGGGCGCCTCCAAAGCAGTATCCAAGTTGTAATAAAAGAAACAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGATAGGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCTAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTGTTAG

Coding sequence (CDS)

ATGGGCCTGATGAGTCGACCAATTCCTCTACCCCGCTTCTTCCCCTTATCTTTCTTTCACTATTCCTACCCCCGGGGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTCGGCCGCGCCAGTCGCTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCCTATTACTTCAGAGTCAGGCACGAGACGAAAGGAAGGTAAACAGGAGGCAGGCGCAATAGAAATGCCACCCGGGTTTATAGACCAATCAACCAGGAAAGAAAGTTCCAGCTACTGGAAAACAACTCCCTCCGCCCTTGTTCTGGTTCTATATCAGACAAGACCCCTTGCCGTCGGACTTAATCATAACTTCTCGCTTTCTCACGCCCTTATTAGAGTATTATCGTCGACGGCTTTCGGGCAGGGACACCAACACCTTTTGGCAACACTCGATTTTTGGAATTTTCGAACTTTGCTCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGGTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTCATTGGTTCTACGGTTGCTAGCACTGATAATAGATTCAATCAAAGGTCGAATTCACCTCCGAACGTCTTTCGTACCAACCAGAGGGCGCGAAAGATTTTTCATCTCTATGGGATCCCGAGTTATTGCGAATTAAAGAAAAATGAAACGATGTTTATTCTCAATCTTGTCGCATTTATTGCTACAGCACTGTTCATTCTAGTTCCTACAGCTTCTCAATTCGATTTCATATGTAGTGAGTTTGAATTGACCCGGTTAGCTAGAAGTTTTCAAGTCAAGCGAGAAAGCAAGTGGATCAGACAAAGTCTTTCTGGTTGTCTCACCAAAGAGTACTGCGTGGCGTGTGTCGCTTATGCGCGCCTATGGCGGGTGTTGAGATCGACACGAATCCTTACCGCATCCGATATCCCTAGCAAGGCTCGAGAGACCTCGATGTCTAAGCGGATTCTTGTTCCTAAACAGAGCAACTATCAGTTTAGTAGCATTGTGGACGACCCGTCGACAGACGTCGAGAGTGTTTTGGAGAAGTCTTCATCTCCGGTGAAAGGTGATAAGGCCCTAGTGGGCCGGATTCCCTTCCATTTGGAAGATGTTTGCAATCGCTTTATGGGATCGCGCGGTTCTTTATCCTACCCGAGCGAAAGCGGAGTCTCCAGAGATCAATCAACCGGGCGCCTCCAAAGCAGTATCCAAGTTGTAATAAAAGAAACAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGATAGGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCTAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTGTTAG

Protein sequence

MGLMSRPIPLPRFFPLSFFHYSYPRGVRPLGRQTTTRVSPFGRASRSSPYFATYVGSVLQGLLELSSTCSWLDRSLRVCFSSNPQSALARPITSESGTRRKEGKQEAGAIEMPPGFIDQSTRKESSSYWKTTPSALVLVLYQTRPLAVGLNHNFSLSHALIRVLSSTAFGQGHQHLLATLDFWNFRTLLPTSGYRTRRALALVCPPTTFRLGNTQPPFLEQEPERAQQLAPFIGSTVASTDNRFNQRSNSPPNVFRTNQRARKIFHLYGIPSYCELKKNETMFILNLVAFIATALFILVPTASQFDFICSEFELTRLARSFQVKRESKWIRQSLSGCLTKEYCVACVAYARLWRVLRSTRILTASDIPSKARETSMSKRILVPKQSNYQFSSIVDDPSTDVESVLEKSSSPVKGDKALVGRIPFHLEDVCNRFMGSRGSLSYPSESGVSRDQSTGRLQSSIQVVIKETRKNKNPTRELKLPKTTYDRGKLKKGLGSEELPEQGVLTALIAGKSLRLPPEFPQGQAKPTQELHQLTPHVDPGGEVSQRCRLDALSHLVLTRVC

Homology

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BLAST of Tan0016851.1 vs. NCBI nr
Match: CAN70459.1 (hypothetical protein VITISV_033464 [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 8.8e-11
Identity = 48/80 (60.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 375 SMSKRILVPKQSNYQFSSIVDDPSTDVESVLEK--------------------------- 426
           S+SK ILVPKQSNYQFSSIVDDPSTDVESVLEK                           
Sbjct: 7   SVSKLILVPKQSNYQFSSIVDDPSTDVESVLEKYGILVKDPFLRYVQELPSIPMVLNWRP 66

[Close]

BLAST of Tan0016851.1 vs. NCBI nr
Match: KAG8362767.1 (hypothetical protein BUALT_BualtUnG0041600 [Buddleja alternifolia])

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-09
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 459 SSIQVVIKETRKNKNPTRELKLPKTTYDRGKLKKGLGSEELPEQGVLTALIAGKSLRLPP 518
           SSI ++    RK        + P   +   KLKKGLGSEELPEQGVLTALIAGKSLRLPP
Sbjct: 2   SSILILSLPERKRSLQRSINRTPPKLHYTDKLKKGLGSEELPEQGVLTALIAGKSLRLPP 61

Query: 519 EFPQGQAKPTQELHQLT 536
           EFPQG      +LH  T
Sbjct: 62  EFPQGGRNFVSKLHTST 78

[Close]

BLAST of Tan0016851.1 vs. NCBI nr
Match: GEX75063.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 40  PFGRASRSSPYFATYVGSVLQGLLELSSTCSWLDRSL 77
           PF  + +SSPYFATYVGSVLQGLLELSSTCSWLDRS+
Sbjct: 64  PFTPSHKSSPYFATYVGSVLQGLLELSSTCSWLDRSV 100

[Close]

BLAST of Tan0016851.1 vs. NCBI nr
Match: TXG46219.1 (hypothetical protein EZV62_028250 [Acer yangbiense] >TXG46255.1 hypothetical protein EZV62_028286 [Acer yangbiense])

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 40  PFGRASRSSPYFATYVGSVLQGLLELSSTCSWLDRSL 77
           PF  + +SSPYFATYVGSVLQGLLELSSTCSWLDRS+
Sbjct: 316 PFTPSHKSSPYFATYVGSVLQGLLELSSTCSWLDRSV 352

[Close]

BLAST of Tan0016851.1 vs. NCBI nr
Match: KAD4584270.1 (hypothetical protein E3N88_21871 [Mikania micrantha])

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-07
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 5   SRPIPL-PRFFPLSFFHYSYPRGVRPLGRQTTTRVSPFGRASRSSPYFATYVGSVLQGLL 64
           +RP+P  P   P    H  Y  G   +    +    PF  + +SSPYFATYVGSVLQGLL
Sbjct: 265 TRPVPRGPYDMPHHMIHPPY--GPYDMHPPISDLGWPFTPSHKSSPYFATYVGSVLQGLL 324

Query: 65  ELSSTCSWLDRSL 77
           ELSSTCSWLDRS+
Sbjct: 325 ELSSTCSWLDRSV 335

[Close]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL
Match: A5BRD7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033464 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-11
Identity = 48/80 (60.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 375 SMSKRILVPKQSNYQFSSIVDDPSTDVESVLEK--------------------------- 426
           S+SK ILVPKQSNYQFSSIVDDPSTDVESVLEK                           
Sbjct: 7   SVSKLILVPKQSNYQFSSIVDDPSTDVESVLEKYGILVKDPFLRYVQELPSIPMVLNWRP 66

[Close]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL
Match: A0A5C7GP19 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 40  PFGRASRSSPYFATYVGSVLQGLLELSSTCSWLDRSL 77
           PF  + +SSPYFATYVGSVLQGLLELSSTCSWLDRS+
Sbjct: 316 PFTPSHKSSPYFATYVGSVLQGLLELSSTCSWLDRSV 352

[Close]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL
Match: A0A5N6NAN1 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_21871 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-07
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 5   SRPIPL-PRFFPLSFFHYSYPRGVRPLGRQTTTRVSPFGRASRSSPYFATYVGSVLQGLL 64
           +RP+P  P   P    H  Y  G   +    +    PF  + +SSPYFATYVGSVLQGLL
Sbjct: 265 TRPVPRGPYDMPHHMIHPPY--GPYDMHPPISDLGWPFTPSHKSSPYFATYVGSVLQGLL 324

Query: 65  ELSSTCSWLDRSL 77
           ELSSTCSWLDRS+
Sbjct: 325 ELSSTCSWLDRSV 335

[Close]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL
Match: A0A5A7Q1W2 (Mitochondrial protein OS=Striga asiatica OX=4170 GN=STAS_15693 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 40 PFGRASRSSPYFATYVGSVLQGLLELSSTCSWLDRSL 77
          PF  + +SSPYFATYVGSVLQGLLELSSTCSWLDRS+
Sbjct: 58 PFTPSHKSSPYFATYVGSVLQGLLELSSTCSWLDRSV 94

[Close]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL
Match: A0A6S7KR95 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1997 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 40  PFGRASRSSPYFATYVGSVLQGLLELSSTCSWLDRSL 77
           PF  + +SSPYFATYVGSVLQGLLELSSTCSWLDRS+
Sbjct: 294 PFTPSHKSSPYFATYVGSVLQGLLELSSTCSWLDRSV 330

The following BLAST results are available for this feature:

BLAST of Tan0016851.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016851.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN70459.1	8.8e-11	60.00	hypothetical protein VITISV_033464 [Vitis vinifera]	[more]
KAG8362767.1	1.7e-09	57.14	hypothetical protein BUALT_BualtUnG0041600 [Buddleja alternifolia]	[more]
GEX75063.1	7.7e-07	83.78	hypothetical protein [Tanacetum cinerariifolium]	[more]
TXG46219.1	7.7e-07	83.78	hypothetical protein EZV62_028250 [Acer yangbiense] >TXG46255.1 hypothetical pro...	[more]
KAD4584270.1	7.7e-07	53.42	hypothetical protein E3N88_21871 [Mikania micrantha]	[more]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5BRD7	4.2e-11	60.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033464 PE=4 SV=1	[more]
A0A5C7GP19	3.7e-07	83.78	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1	[more]
A0A5N6NAN1	3.7e-07	53.42	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_21871 PE=3 SV=1	[more]
A0A5A7Q1W2	3.7e-07	83.78	Mitochondrial protein OS=Striga asiatica OX=4170 GN=STAS_15693 PE=4 SV=1	[more]
A0A6S7KR95	3.7e-07	83.78	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1997 PE=4 SV=1	[more]

BLAST of Tan0016851.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007826	Photosystem II PsbM	PFAM	PF05151	PsbM	coord: 286..303 e-value: 2.8E-5 score: 23.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0016851	Tan0016851	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:82497..82572	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:84496..84557	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:85359..85445	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:85991..86036	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:86924..86986	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:88683..88798	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:89739..89854	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:89998..90213	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:92066..92242	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:92781..92856	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:92945..93035	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:93124..93217	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:93311..93411	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:93786..93920	exon
Tan0016851.1-exon	Tan0016851.1-exon-Contig00127:94068..94300	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:82497..82572	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:84496..84557	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:85359..85445	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:85991..86036	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:86924..86986	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:88683..88798	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:89739..89854	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:89998..90213	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:92066..92242	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:92781..92856	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:92945..93035	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:93124..93217	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:93311..93411	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:93786..93920	CDS
Tan0016851.1-cds	Tan0016851.1-cds-Contig00127:94068..94300	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0016851.1	Tan0016851.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005524	ATP binding