Tan0016752.1 (mRNA) Snake gourd v1

Overview


Name	Tan0016752.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type domain-containing protein
Location	LG02: 18519555 .. 18520309 (-)
Sequence length	705
RNA-Seq Expression	Tan0016752.1
Synteny	Tan0016752.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAACAAATCTTCGAACTGTGTAGGGATTATAATGTTCCAATGTCGGTAAAAATCAAACCTCCAACTTTAAGATCTCAAAGCCAAAATTCAACCACATTGGTCGAAGAAATCAGCCTCAAATTCAAAGCCCAACTAAAAAACAATTACTTCCAAGTAGTCGAAGAAGGAAGTTGGGATGCAACAACAACATTCGTTGGCCAACTCAGAACTCCAAAATTTCTCTTTGCAGCTTATCAACTTCCTGTCTCCATTTTCAACCGTGGCGACAAAACCTTAGAGCAATATCTAACATGGCAGCTCGGAATCTACCAAGACGTCATTAATATCGAATTTGTAGCTGACCAGATAATACAATATTGGGTTAGTAAAGTCGAACAAGAAGGAAATTCGAGTCAATTTGGGAGGATTTACCCTCTTAAAATTAAGATAGAATTTTGTAATTATGAGATGATTAATGCGAGTCAATTAGTAAGTATGAATTTAGATGATGGAATGGTTCGGACATGCGACGATGCAATGGAGAAGATGTTGAAGAGAGTGGAAAGTATTGAGGGTAGGGATGAAAGTTGTGTGATTTGTATGGAGGAGATTAATATTATTATTGAAAAGAAGAAGAAGAAGAAAAGAAAAAAGTGATGATAATAATGGAAATGCCTTGCTTGCATGTGTTTCATGAAGAATGTATTAAGAAGTGGTTGAAGAATAGTCATTATTGTCCAATTTGTAGATTCCCAATGCCTACTAAATGA

mRNA sequence

ATGGCAGAACAAATCTTCGAACTGTGTAGGGATTATAATGTTCCAATGTCGGTAAAAATCAAACCTCCAACTTTAAGATCTCAAAGCCAAAATTCAACCACATTGGTCGAAGAAATCAGCCTCAAATTCAAAGCCCAACTAAAAAACAATTACTTCCAAGTAGTCGAAGAAGGAAGTTGGGATGCAACAACAACATTCGTTGGCCAACTCAGAACTCCAAAATTTCTCTTTGCAGCTTATCAACTTCCTGTCTCCATTTTCAACCGTGGCGACAAAACCTTAGAGCAATATCTAACATGGCAGCTCGGAATCTACCAAGACGTCATTAATATCGAATTTGTAGCTGACCAGATAATACAATATTGGGTTAGTAAAGTCGAACAAGAAGGAAATTCGAGTCAATTTGGGAGGATTTACCCTCTTAAAATTAAGATAGAATTTTGTAATTATGAGATGATTAATGCGAGTCAATTAGTAAGTATGAATTTAGATGATGGAATGGTTCGGACATGCGACGATGCAATGGAGAAGATGTTGAAGAGAGTGGAAAGTATTGAGGGTAGGGATGAAAAAGAAGAAAAGAAAAAAGTGATGATAATAATGGAAATGCCTTGCTTGCATGTGTTTCATGAAGAATGTATTAAGAAGTGGTTGAAGAATAGTCATTATTGTCCAATTTGTAGATTCCCAATGCCTACTAAATGA

Coding sequence (CDS)

ATGGCAGAACAAATCTTCGAACTGTGTAGGGATTATAATGTTCCAATGTCGGTAAAAATCAAACCTCCAACTTTAAGATCTCAAAGCCAAAATTCAACCACATTGGTCGAAGAAATCAGCCTCAAATTCAAAGCCCAACTAAAAAACAATTACTTCCAAGTAGTCGAAGAAGGAAGTTGGGATGCAACAACAACATTCGTTGGCCAACTCAGAACTCCAAAATTTCTCTTTGCAGCTTATCAACTTCCTGTCTCCATTTTCAACCGTGGCGACAAAACCTTAGAGCAATATCTAACATGGCAGCTCGGAATCTACCAAGACGTCATTAATATCGAATTTGTAGCTGACCAGATAATACAATATTGGGTTAGTAAAGTCGAACAAGAAGGAAATTCGAGTCAATTTGGGAGGATTTACCCTCTTAAAATTAAGATAGAATTTTGTAATTATGAGATGATTAATGCGAGTCAATTAGTAAGTATGAATTTAGATGATGGAATGGTTCGGACATGCGACGATGCAATGGAGAAGATGTTGAAGAGAGTGGAAAGTATTGAGGGTAGGGATGAAAAAGAAGAAAAGAAAAAAGTGATGATAATAATGGAAATGCCTTGCTTGCATGTGTTTCATGAAGAATGTATTAAGAAGTGGTTGAAGAATAGTCATTATTGTCCAATTTGTAGATTCCCAATGCCTACTAAATGA

Protein sequence

MAEQIFELCRDYNVPMSVKIKPPTLRSQSQNSTTLVEEISLKFKAQLKNNYFQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVINIEFVADQIIQYWVSKVEQEGNSSQFGRIYPLKIKIEFCNYEMINASQLVSMNLDDGMVRTCDDAMEKMLKRVESIEGRDEKEEKKKVMIIMEMPCLHVFHEECIKKWLKNSHYCPICRFPMPTK

Homology

[Close]

BLAST of Tan0016752.1 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.3e-06
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 200 IMEMPCLHVFHEECIKKWLKNSHYCPICRFPMPT 234
           + +MPC HVFH++C+  WL+  + CP+CRF +PT
Sbjct: 229 VKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of Tan0016752.1 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 202 EMPCLHVFHEECIKKWLKNSHYCPICRFPMPTK 235
           EMPC H+FH++CI  WL   + CP+CRF +P++
Sbjct: 214 EMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Tan0016752.1 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 201 MEMPCLHVFHEECIKKWLKNSHYCPICRFPMPT 234
           +EMPC H+FH  CI  WL  ++ CP+CR+ +PT
Sbjct: 90  IEMPCHHLFHSSCILPWLSKTNSCPLCRYELPT 122

[Close]

BLAST of Tan0016752.1 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.4e-05
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 200 IMEMPCLHVFHEECIKKWLKNSHYCPICRFPMPT 234
           ++EMPC H+FH  CI  WL  ++ CP+CR  +PT
Sbjct: 101 VIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPT 134

[Close]

BLAST of Tan0016752.1 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.4e-05
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 200 IMEMPCLHVFHEECIKKWLKNSHYCPICRFPMPT 234
           ++EMPC H+FH  CI  WL  ++ CP+CR  +PT
Sbjct: 101 VIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPT 134

[Close]

BLAST of Tan0016752.1 vs. NCBI nr
Match: ADN34252.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo] >KAA0031412.1 putative zinc finger protein [Cucumis melo var. makuwa] >TYK06863.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-46
Identity = 124/263 (47.15%), Postives = 160/263 (60.84%), Query Frame = 0


Query: 1   MAEQIFELCR---DYNVPMSVKIKPPTLRSQSQN------STTLVEEISLKFKAQLKNNY 60
           MAE+IF +CR      + MS++I  P  R Q  N      S TLVE+I LKFK QLK  +
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQTSSPTLVEQICLKFKVQLKCQH 60

Query: 61  FQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVINI 120
           FQV E G+  +TT     +R+ +  FA +QLP+SIF  GDKTL++ L  +  +Y D+INI
Sbjct: 61  FQVWEGGNGHSTTLVREHIRS-QHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIINI 120

Query: 121 EFVADQIIQYWVSKVE----QEGNSS-QFGRIYPLKIKIEFCNYEMINASQLVSMNLDDG 180
           E +A++II++WV KVE    QE NS+  F +IYPL+I I     +MI A Q     +D  
Sbjct: 121 ELLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPRLAMIDQP 180

Query: 181 -MVRTCDDAMEKMLKRVESIE----GRDE------------KEEKKKVMIIMEMPCLHVF 233
            MV T D A+E MLKRVE+ E    G DE            KEEK     +++MPCLH+F
Sbjct: 181 LMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPCLHMF 240

[Close]

BLAST of Tan0016752.1 vs. NCBI nr
Match: ADN34253.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo] >TYK06864.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 5.0e-45
Identity = 117/260 (45.00%), Postives = 156/260 (60.00%), Query Frame = 0


Query: 1   MAEQIFELCRD--YNVPMSVKIKPPTLR---SQSQ-----NSTTLVEEISLKFKAQLKNN 60
           MAEQ  + C    Y + MS++I  P LR    QSQ     NS  LV++I L FK Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  YFQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVIN 120
           +F   EEGS  ATT     + +    F A QLP+SIF RGDKTL++ L  +  +++ ++N
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQP-TFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVN 120

Query: 121 IEFVADQIIQYWVSKVE--QEGNSSQFGRIYPLKIKIEFCNYEMINASQLVSMNLDDGMV 180
           +E V D+II++W+ KVE  QE NS  F  IYPL+I+IE     MI A  ++    +  MV
Sbjct: 121 VELVVDEIIKHWIRKVEEDQENNSRVFAEIYPLEIRIELLVCRMIPA--IIDQPQEVMMV 180

Query: 181 RTCDDAMEKMLKRVESIE-----GRDE-----------KEEKKKVMIIMEMPCLHVFHEE 233
            T D+AME MLKRVE+ E     G D            KEEK+   ++++MPCLH+FHEE
Sbjct: 181 PTSDNAMESMLKRVENNEELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLHMFHEE 240

[Close]

BLAST of Tan0016752.1 vs. NCBI nr
Match: KAA0031413.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 5.6e-44
Identity = 115/260 (44.23%), Postives = 156/260 (60.00%), Query Frame = 0


Query: 1   MAEQIFELCRD--YNVPMSVKIKPPTLR---SQSQ-----NSTTLVEEISLKFKAQLKNN 60
           MAEQ  + C    Y + MS++I  P LR    QSQ     NS  LV++I L FK Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  YFQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVIN 120
           +F   EEGS  ATT     + +    F A QLP+SIF RGDKTL++ L  +  +++ ++N
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQP-TFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVN 120

Query: 121 IEFVADQIIQYWVSKVE--QEGNSSQFGRIYPLKIKIEFCNYEMINASQLVSMNLDDGMV 180
           +E V D+II++W+ KVE  QE +S  F  IYPL+I+IE     MI A  ++    +  MV
Sbjct: 121 VELVVDEIIKHWIRKVEEDQENSSRVFAEIYPLEIRIELLVCRMIPA--IIDQPQEVMMV 180

Query: 181 RTCDDAMEKMLKRVESIE-----GRDE-----------KEEKKKVMIIMEMPCLHVFHEE 233
            T D+AME MLKRVE+ +     G D            KEEK+   ++++MPCLH+FHEE
Sbjct: 181 PTSDNAMESMLKRVENNKELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLHMFHEE 240

[Close]

BLAST of Tan0016752.1 vs. NCBI nr
Match: KAE8645828.1 (hypothetical protein Csa_017274 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-43
Identity = 115/254 (45.28%), Postives = 154/254 (60.63%), Query Frame = 0


Query: 1   MAEQIFELCRD-YNVPMSVKIKPPTLRSQSQNSTTLVEEISLKFKAQLKNNYFQVVEEGS 60
           MAEQ F+ C   Y + MS++I  P ++++S NS T V++I L FK ++K  +FQ  EE +
Sbjct: 267 MAEQNFDDCTSGYYMGMSLRITDP-IQTRS-NSPTSVKQIDLNFKVEVKCQHFQAGEEDT 326

Query: 61  WDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVINIEFVADQII 120
             A TTF+ +       F A QLPVSIF  GDKTL++ L  +  +++ +INIE V DQII
Sbjct: 327 TFA-TTFLSEHIIAHQPFPALQLPVSIFKHGDKTLKRLLFQKFQMFRAIINIELVTDQII 386

Query: 121 QYWVSKVE--QEGNSSQFGRIYPLKIKIEFCNYEMINASQLVSMNLDDGMVR---TCDDA 180
           ++WV KVE  +E NS  F  IYPL+I IE    +MI+A       +D   VR   T D A
Sbjct: 387 KHWVKKVEDDKENNSGVFEEIYPLEITIEVLVLQMIDAVDQPQETIDQPQVRMVPTSDSA 446

Query: 181 MEKMLKRVESIE----------------GRDEKEEKKKVMIIMEMPCLHVFHEECIKKWL 233
           M+ MLKRVE+ E                 +  KEEK    ++++MPCLH+FHEECI+KWL
Sbjct: 447 MKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRKWL 506

[Close]

BLAST of Tan0016752.1 vs. NCBI nr
Match: KAA0031411.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-40
Identity = 106/268 (39.55%), Postives = 150/268 (55.97%), Query Frame = 0


Query: 1   MAEQIFELCRDYN-VPMSVKIKPPTLRSQ--------SQNSTTLVEEISLKFKAQLKNNY 60
           MA QIF +CR+   V MS++I                 QNS+  V+ I L FK QLK ++
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 61  FQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVINI 120
           F V E+G    TT+F+ +  +     A Y+LP+SIF  GDK LEQYL  +  +Y++ INI
Sbjct: 61  FLVYEDGI-TTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINI 120

Query: 121 EFVADQIIQYWVSKVEQEGNSSQ----------FGRIYPLKIKIEFCNYEMINASQLVSM 180
             VAD++IQ+WV +VE++ +  Q          F +IYPL+I +E          Q++  
Sbjct: 121 TLVADRLIQHWVKRVEEDDHEYQEENNNHDFNVFQKIYPLEITLEM---------QIIQR 180

Query: 181 NLDDG----MVRTCDDAMEKMLKRVES------------IEGRDEKEEKKKVMIIMEMPC 234
            +++     MV T D A+E ML+RVE+            +E    KEE++    +++MPC
Sbjct: 181 YVEESPIMIMVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKEEEETEKSVLQMPC 240

[Close]

BLAST of Tan0016752.1 vs. ExPASy TrEMBL
Match: A0A5D3C4K6 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001670 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.8e-47
Identity = 124/263 (47.15%), Postives = 160/263 (60.84%), Query Frame = 0


Query: 1   MAEQIFELCR---DYNVPMSVKIKPPTLRSQSQN------STTLVEEISLKFKAQLKNNY 60
           MAE+IF +CR      + MS++I  P  R Q  N      S TLVE+I LKFK QLK  +
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQTSSPTLVEQICLKFKVQLKCQH 60

Query: 61  FQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVINI 120
           FQV E G+  +TT     +R+ +  FA +QLP+SIF  GDKTL++ L  +  +Y D+INI
Sbjct: 61  FQVWEGGNGHSTTLVREHIRS-QHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIINI 120

Query: 121 EFVADQIIQYWVSKVE----QEGNSS-QFGRIYPLKIKIEFCNYEMINASQLVSMNLDDG 180
           E +A++II++WV KVE    QE NS+  F +IYPL+I I     +MI A Q     +D  
Sbjct: 121 ELLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPRLAMIDQP 180

Query: 181 -MVRTCDDAMEKMLKRVESIE----GRDE------------KEEKKKVMIIMEMPCLHVF 233
            MV T D A+E MLKRVE+ E    G DE            KEEK     +++MPCLH+F
Sbjct: 181 LMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPCLHMF 240

[Close]

BLAST of Tan0016752.1 vs. ExPASy TrEMBL
Match: E5GCQ3 (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.8e-47
Identity = 124/263 (47.15%), Postives = 160/263 (60.84%), Query Frame = 0


Query: 1   MAEQIFELCR---DYNVPMSVKIKPPTLRSQSQN------STTLVEEISLKFKAQLKNNY 60
           MAE+IF +CR      + MS++I  P  R Q  N      S TLVE+I LKFK QLK  +
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQTSSPTLVEQICLKFKVQLKCQH 60

Query: 61  FQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVINI 120
           FQV E G+  +TT     +R+ +  FA +QLP+SIF  GDKTL++ L  +  +Y D+INI
Sbjct: 61  FQVWEGGNGHSTTLVREHIRS-QHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIINI 120

Query: 121 EFVADQIIQYWVSKVE----QEGNSS-QFGRIYPLKIKIEFCNYEMINASQLVSMNLDDG 180
           E +A++II++WV KVE    QE NS+  F +IYPL+I I     +MI A Q     +D  
Sbjct: 121 ELLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPRLAMIDQP 180

Query: 181 -MVRTCDDAMEKMLKRVESIE----GRDE------------KEEKKKVMIIMEMPCLHVF 233
            MV T D A+E MLKRVE+ E    G DE            KEEK     +++MPCLH+F
Sbjct: 181 LMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPCLHMF 240

[Close]

BLAST of Tan0016752.1 vs. ExPASy TrEMBL
Match: A0A5D3C6G9 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001680 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 117/260 (45.00%), Postives = 156/260 (60.00%), Query Frame = 0


Query: 1   MAEQIFELCRD--YNVPMSVKIKPPTLR---SQSQ-----NSTTLVEEISLKFKAQLKNN 60
           MAEQ  + C    Y + MS++I  P LR    QSQ     NS  LV++I L FK Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  YFQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVIN 120
           +F   EEGS  ATT     + +    F A QLP+SIF RGDKTL++ L  +  +++ ++N
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQP-TFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVN 120

Query: 121 IEFVADQIIQYWVSKVE--QEGNSSQFGRIYPLKIKIEFCNYEMINASQLVSMNLDDGMV 180
           +E V D+II++W+ KVE  QE NS  F  IYPL+I+IE     MI A  ++    +  MV
Sbjct: 121 VELVVDEIIKHWIRKVEEDQENNSRVFAEIYPLEIRIELLVCRMIPA--IIDQPQEVMMV 180

Query: 181 RTCDDAMEKMLKRVESIE-----GRDE-----------KEEKKKVMIIMEMPCLHVFHEE 233
            T D+AME MLKRVE+ E     G D            KEEK+   ++++MPCLH+FHEE
Sbjct: 181 PTSDNAMESMLKRVENNEELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLHMFHEE 240

[Close]

BLAST of Tan0016752.1 vs. ExPASy TrEMBL
Match: E5GCQ4 (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 117/260 (45.00%), Postives = 156/260 (60.00%), Query Frame = 0


Query: 1   MAEQIFELCRD--YNVPMSVKIKPPTLR---SQSQ-----NSTTLVEEISLKFKAQLKNN 60
           MAEQ  + C    Y + MS++I  P LR    QSQ     NS  LV++I L FK Q+K  
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  YFQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVIN 120
           +F   EEGS  ATT     + +    F A QLP+SIF RGDKTL++ L  +  +++ ++N
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQP-TFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVN 120

Query: 121 IEFVADQIIQYWVSKVE--QEGNSSQFGRIYPLKIKIEFCNYEMINASQLVSMNLDDGMV 180
           +E V D+II++W+ KVE  QE NS  F  IYPL+I+IE     MI A  ++    +  MV
Sbjct: 121 VELVVDEIIKHWIRKVEEDQENNSRVFAEIYPLEIRIELLVCRMIPA--IIDQPQEVMMV 180

Query: 181 RTCDDAMEKMLKRVESIE-----GRDE-----------KEEKKKVMIIMEMPCLHVFHEE 233
            T D+AME MLKRVE+ E     G D            KEEK+   ++++MPCLH+FHEE
Sbjct: 181 PTSDNAMESMLKRVENNEELMKLGDDSIDCVICLEKIGKEEKRSGRVVLQMPCLHMFHEE 240

[Close]

BLAST of Tan0016752.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 117/265 (44.15%), Postives = 156/265 (58.87%), Query Frame = 0


Query: 1   MAEQIFELCR---DYNVPMSVKIKPPTLRSQSQ-------NSTTLVEEISLKFKAQLK-N 60
           MAEQIF  CR      + MS++I  P LR Q Q       NS TLV++I L FK ++K  
Sbjct: 1   MAEQIFGPCRYGSGSYIGMSLRITDPDLRHQPQSQIRTPPNSPTLVKQIDLNFKVEVKCQ 60

Query: 61  NYFQVVEEGSWDATTTFVGQLRTPKFLFAAYQLPVSIFNRGDKTLEQYLTWQLGIYQDVI 120
           +YFQ  E G+    T  + +  +        QLPVSIF  GDKTL++ L  +  IY+ +I
Sbjct: 61  HYFQAGEGGNSTFATALLSEHISSHHPLPTLQLPVSIFKHGDKTLKRLLFREFQIYRAII 120

Query: 121 NIEFVADQIIQYWVSKVEQEGNSSQ-FGRIYPLKIKIEFCNYEMINA-SQLVSMNLDDG- 180
           NIE V D+II++WV KV++E ++SQ F  IYPL+I IE   Y+MI+A  Q   + +D   
Sbjct: 121 NIELVVDEIIKHWVKKVDEENSTSQVFEEIYPLEITIELLVYQMIHAIDQPHEIMMDQPQ 180

Query: 181 --MVRTCDDAMEKMLKRVESIE----------------GRDEKEEKKKVMIIMEMPCLHV 234
             MV T + AME MLK+VE+ E                    KE+K    ++++MPCLH+
Sbjct: 181 VMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVICLEEISKEKKGSEAVVLQMPCLHM 240

[Close]

BLAST of Tan0016752.1 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 200 IMEMPCLHVFHEECIKKWLKNSHYCPICRFPMPT 234
           + +MPC HVFH++C+  WL+  + CP+CRF +PT
Sbjct: 229 VKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of Tan0016752.1 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 202 EMPCLHVFHEECIKKWLKNSHYCPICRFPMPTK 235
           EMPC H+FH++CI  WL   + CP+CRF +P++
Sbjct: 214 EMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Tan0016752.1 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 189 DEKEEKKKVMIIMEMPCLHVFHEECIKKWLKNSHYCPICRFPM--PTK 235
           ++ E K+ VM+    PC H+FHEECI  WLK    CP+CRF +  PTK
Sbjct: 149 EDFEPKETVML---TPCKHMFHEECIVPWLKTKGQCPVCRFVILKPTK 193

[Close]

BLAST of Tan0016752.1 vs. TAIR 10
Match: AT3G58720.2 (RING/U-box superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 189 DEKEEKKKVMIIMEMPCLHVFHEECIKKWLKNSHYCPICRFPM--PTK 235
           ++ E K+ VM+    PC H+FHEECI  WLK    CP+CRF +  PTK
Sbjct: 177 EDFEPKETVML---TPCKHMFHEECIVPWLKTKGQCPVCRFVILKPTK 221

[Close]

BLAST of Tan0016752.1 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.9e-06
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 202 EMPCLHVFHEECIKKWLKNSHYCPICRFPMPT 234
           EMPC H+FH +CI  WL   + CP+CRF +P+
Sbjct: 230 EMPCKHIFHGDCIVPWLSIRNSCPVCRFELPS 261

The following BLAST results are available for this feature:

BLAST of Tan0016752.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	6.3e-06	50.00	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q940T5	1.8e-05	51.52	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
Q9P0P0	1.8e-05	51.52	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]
Q9CY62	2.4e-05	50.00	E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1	[more]
Q6AXU4	2.4e-05	50.00	E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 ...	[more]

BLAST of Tan0016752.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34252.1	1.2e-46	47.15	hypothetical zinc finger protein [Cucumis melo subsp. melo] >KAA0031412.1 putati...	[more]
ADN34253.1	5.0e-45	45.00	hypothetical zinc finger protein [Cucumis melo subsp. melo] >TYK06864.1 putative...	[more]
KAA0031413.1	5.6e-44	44.23	putative zinc finger protein [Cucumis melo var. makuwa]	[more]
KAE8645828.1	1.6e-43	45.28	hypothetical protein Csa_017274 [Cucumis sativus]	[more]
KAA0031411.1	2.9e-40	39.55	putative zinc finger protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0016752.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4K6	5.8e-47	47.15	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCQ3	5.8e-47	47.15	Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3C6G9	2.4e-45	45.00	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCQ4	2.4e-45	45.00	Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0K7L0	3.2e-45	44.15	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 P...	[more]

BLAST of Tan0016752.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19950.1	4.4e-07	50.00	RING/U-box superfamily protein	[more]
AT5G59550.1	1.3e-06	51.52	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G58720.1	2.2e-06	50.00	RING/U-box superfamily protein	[more]
AT3G58720.2	2.2e-06	50.00	RING/U-box superfamily protein	[more]
AT3G46620.1	2.9e-06	53.13	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 192..228 e-value: 2.2E-10 score: 40.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 142..234 e-value: 7.3E-15 score: 56.9
None	No IPR available	PANTHER	PTHR15710:SF77	OS07G0631200 PROTEIN	coord: 169..231
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 169..231
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 200..233
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 171..228 score: 9.804232

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0016752	Tan0016752	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016752.1-exon	Tan0016752.1-exon-LG02:18519555..18519688	exon
Tan0016752.1-exon	Tan0016752.1-exon-LG02:18519739..18520309	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016752.1-cds	Tan0016752.1-cds-LG02:18519555..18519688	CDS
Tan0016752.1-cds	Tan0016752.1-cds-LG02:18519739..18520309	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0016752.1	Tan0016752.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding