Tan0016555.1 (mRNA) Snake gourd v1

Overview


Name	Tan0016555.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG02: 83596702 .. 83598990 (-)
Sequence length	1188
RNA-Seq Expression	Tan0016555.1
Synteny	Tan0016555.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCCACGAAGATTAGTGTGGAAGACCATTTTATCGCACAGGCGACATGCCTATCTCATTTGAGTAACACGAACTTGCTGGTGAGATCAAAGCTTAGCAAGACTCAGCTTCAGTTATTCCGTAGTACTACCATATTCAGACCGTATGTCGACTTGGATATGATTTTTAACAGCCCGCTCGTTCATAATATGCTTCTGAGGGAGGTCGGCGAAATTGTCGAGGGTGGTATGAAATTCGAGGTCAGGGGAACGACCGTTGCCTTCACTAAGGAGGAATTTCTTTTGATCACCGGGTTGTGGCACACCCCGACTAGCTCGAAAAACATTCAGGAATCTCACCAGACCGGAGGTCAGAGTTTGAAGGCGAAATACTTCTCGGAGCTAACCACTGATAGTAAGGCACAACTTCATCTTTCTACATTCGAGACGAAGTACAAGGAGTTAAAGTTCGAGAACGATGAAGACGCCGTGAAGGTAACCCTCGTGTACTATACAGAGATGGTTATGCTTGGTAAAGATAGGAAGAAGATTGTTAAAGACCAGTCGCTTTTTGATGAAGTCGAGCATCTTGACCGATTCAATAGTATAGACTGGGGTACAAGAATATGGGATAGGACATTGAAAGGTCTTCAAATAGCTTTACACGGGAAGGTTGACCTATACAAAAAGAATTTGACTAAGAACAAGGACTATATTGTCAAGTATAGTCTTCCAGGATTCCCACATGCATTTCAGGTAAGTTATTGTTCTGATATTTTCATACCATGATATCAACTTGCATCTACGAATATCTATATAACAGTGGAATGTGGTTATAATATGTAGGTCTGGATATACGAGACACTGTCCACGCTGAAGGACTCGGCCGCACGACGATTGAACGATGATGCAATCCCGCGTTTACTCCGATGGTCGTGCGAACGGTCCATCCCATTTAAATGGTTGCAGACAAATGTGTTTGACTGTCCTGAAGTAAGTAAATTCACAATAATCTTCGTCTTATGTAATATATTGTTTCATTGAATTTAACTTTTCAAACAAACCTTCCTAGACTGTTGTCAATACGAAACTCATAATGTCTGATGCGGGCAGCGGTTTACGCTACGCGACGATCAGTGGCACCGACCGGCGGAAAGTGTGAATGCAAAGGAGGAGGAAGGAGTCAACGTAGACACAATGACAGACATTCACACGACACGAAGTCCTGCAATTCAACCGTTAGACGACCTGCATCCAGAATCCGAAGGGCCTTCTGGAGGTGTTGCTGATGACACCCCCCGTATGGAGGACGCGAATCTTCGTGAACAAAGTTCTCTACCTCAATGTACGAAAACTCGGGTTCGGTCCCGTGCGTCGAACCGACGTATCTGGACGTCGACTACGCGTGGTACAAGTCAGTCTATGCAACGGATTGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTCAAGAAGTGAAAGACGACGTTCATGTCTTGCGGGGAGAAATGCAAGACATGAAGGACAAACTTGAAGACATGCACCAGGACATCAGAACACTTATTTCTAGATTAGACCAACACATCCAGGTACACAACCGTAATTTCATGGTATCATTTATTGCCTACTTGTAGTTTTATCGCATTTTCGTACGTATTAATTTTTCATATGTGTTTCAGGTCCAAACCAACGTTCGTACACCAGAATACTCCGCAGGACATGCATCTGTCAGACAGACGACTGATGAACCACTTCCTCCGCATGTCGAAGATGTGGATGTGTTAGTGTGCGATCTTCCCACGTCCGATGCAGCACGCGATGGGTGTCAATCAACAGAAGTTCAATGTCATACCTTCGACATTTCATCTGTTGATCCGGTCCCTTTCGGAAACGTGGACCAGACAGAAACACCGTTGATTAGTCATTCGTCGAAGAGGAAGTCAGACGAATTGGAGACTTCAAACCTTCCGCCAAAGAAACATACGGTATCTACGTCGGGTGGTTTGCAAGGTAGTGTGTCTGATGAGATGACACCTTCAGATGCACGCAACATGTATAATCCATTACATCCAGTCCCGACAGATACGAACGCCATGATGAATTCATGGCAACGATTGAAAAACACGACTGGTACCCAAGACGAGTACAGGGTATGTGAATGGTCTACATGTGGACCCATAGATAGGACGTTCCTACGTTCATTGTCCCGGAGAAACACATGGGTTACTTGTGATGTAAGTTCGTTGTTTAGTGCATTTATTCATTCATTGCATTGTATGTACAAAAGTCTTGTCCATTCCATTAGCTGA

mRNA sequence

ATGGCACCCACGAAGATTAGTGTGGAAGACCATTTTATCGCACAGGCGACATGCCTATCTCATTTGAGTAACACGAACTTGCTGCGGTTTACGCTACGCGACGATCAGTGGCACCGACCGGCGGAAAGTGTGAATGCAAAGGAGGAGGAAGGAGTCAACGTAGACACAATGACAGACATTCACACGACACGAAGTCCTGCAATTCAACCGTTAGACGACCTGCATCCAGAATCCGAAGGGCCTTCTGGAGGTGTTGCTGATGACACCCCCCGTATGGAGGACGCGAATCTTCGTGAACAAAGTTCTCTACCTCAATGTACGAAAACTCGGGTTCGGTCCCGTGCGTCGAACCGACGTATCTGGACGTCGACTACGCGTGGTACAAGTCAGTCTATGCAACGGATTGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTCAAGAAGTGAAAGACGACGTTCATGTCTTGCGGGGAGAAATGCAAGACATGAAGGACAAACTTGAAGACATGCACCAGGACATCAGAACACTTATTTCTAGATTAGACCAACACATCCAGGTCCAAACCAACGTTCGTACACCAGAATACTCCGCAGGACATGCATCTGTCAGACAGACGACTGATGAACCACTTCCTCCGCATGTCGAAGATGTGGATGTGTTAGTGTGCGATCTTCCCACGTCCGATGCAGCACGCGATGGGTGTCAATCAACAGAAGTTCAATGTCATACCTTCGACATTTCATCTGTTGATCCGGTCCCTTTCGGAAACGTGGACCAGACAGAAACACCGTTGATTAGTCATTCGTCGAAGAGGAAGTCAGACGAATTGGAGACTTCAAACCTTCCGCCAAAGAAACATACGGTATCTACGTCGGGTGGTTTGCAAGGTAGTGTGTCTGATGAGATGACACCTTCAGATGCACGCAACATGTATAATCCATTACATCCAGTCCCGACAGATACGAACGCCATGATGAATTCATGGCAACGATTGAAAAACACGACTGGTACCCAAGACGAGTACAGGGTATGTGAATGGTCTACATGTGGACCCATAGATAGGACGTTCCTACGTTCATTGTCCCGGAGAAACACATGGGTTACTTGTGATGTAAGTTCGTTGTTTAGTGCATTTATTCATTCATTGCATTGTATGTACAAAAGTCTTGTCCATTCCATTAGCTGA

Coding sequence (CDS)

ATGGCACCCACGAAGATTAGTGTGGAAGACCATTTTATCGCACAGGCGACATGCCTATCTCATTTGAGTAACACGAACTTGCTGCGGTTTACGCTACGCGACGATCAGTGGCACCGACCGGCGGAAAGTGTGAATGCAAAGGAGGAGGAAGGAGTCAACGTAGACACAATGACAGACATTCACACGACACGAAGTCCTGCAATTCAACCGTTAGACGACCTGCATCCAGAATCCGAAGGGCCTTCTGGAGGTGTTGCTGATGACACCCCCCGTATGGAGGACGCGAATCTTCGTGAACAAAGTTCTCTACCTCAATGTACGAAAACTCGGGTTCGGTCCCGTGCGTCGAACCGACGTATCTGGACGTCGACTACGCGTGGTACAAGTCAGTCTATGCAACGGATTGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTCAAGAAGTGAAAGACGACGTTCATGTCTTGCGGGGAGAAATGCAAGACATGAAGGACAAACTTGAAGACATGCACCAGGACATCAGAACACTTATTTCTAGATTAGACCAACACATCCAGGTCCAAACCAACGTTCGTACACCAGAATACTCCGCAGGACATGCATCTGTCAGACAGACGACTGATGAACCACTTCCTCCGCATGTCGAAGATGTGGATGTGTTAGTGTGCGATCTTCCCACGTCCGATGCAGCACGCGATGGGTGTCAATCAACAGAAGTTCAATGTCATACCTTCGACATTTCATCTGTTGATCCGGTCCCTTTCGGAAACGTGGACCAGACAGAAACACCGTTGATTAGTCATTCGTCGAAGAGGAAGTCAGACGAATTGGAGACTTCAAACCTTCCGCCAAAGAAACATACGGTATCTACGTCGGGTGGTTTGCAAGGTAGTGTGTCTGATGAGATGACACCTTCAGATGCACGCAACATGTATAATCCATTACATCCAGTCCCGACAGATACGAACGCCATGATGAATTCATGGCAACGATTGAAAAACACGACTGGTACCCAAGACGAGTACAGGGTATGTGAATGGTCTACATGTGGACCCATAGATAGGACGTTCCTACGTTCATTGTCCCGGAGAAACACATGGGTTACTTGTGATGTAAGTTCGTTGTTTAGTGCATTTATTCATTCATTGCATTGTATGTACAAAAGTCTTGTCCATTCCATTAGCTGA

Protein sequence

MAPTKISVEDHFIAQATCLSHLSNTNLLRFTLRDDQWHRPAESVNAKEEEGVNVDTMTDIHTTRSPAIQPLDDLHPESEGPSGGVADDTPRMEDANLREQSSLPQCTKTRVRSRASNRRIWTSTTRGTSQSMQRIERRLGMIEDSVQEVKDDVHVLRGEMQDMKDKLEDMHQDIRTLISRLDQHIQVQTNVRTPEYSAGHASVRQTTDEPLPPHVEDVDVLVCDLPTSDAARDGCQSTEVQCHTFDISSVDPVPFGNVDQTETPLISHSSKRKSDELETSNLPPKKHTVSTSGGLQGSVSDEMTPSDARNMYNPLHPVPTDTNAMMNSWQRLKNTTGTQDEYRVCEWSTCGPIDRTFLRSLSRRNTWVTCDVSSLFSAFIHSLHCMYKSLVHSIS

Homology

The following BLAST results are available for this feature:

BLAST of Tan0016555.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016555.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016555.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016555.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 132..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..307

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0016555	Tan0016555	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016555.1-exon	Tan0016555.1-exon-LG02:83596702..83597331	exon
Tan0016555.1-exon	Tan0016555.1-exon-LG02:83597422..83597895	exon
Tan0016555.1-exon	Tan0016555.1-exon-LG02:83598907..83598990	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016555.1-cds	Tan0016555.1-cds-LG02:83596702..83597331	CDS
Tan0016555.1-cds	Tan0016555.1-cds-LG02:83597422..83597895	CDS
Tan0016555.1-cds	Tan0016555.1-cds-LG02:83598907..83598990	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0016555.1	Tan0016555.1-protein	polypeptide