Tan0013836.1 (mRNA) Snake gourd v1

Overview


Name	Tan0013836.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	BolA protein
Location	LG05: 72246778 .. 72248029 (+)
Sequence length	1001
RNA-Seq Expression	Tan0013836.1
Synteny	Tan0013836.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTCTTCAATACCGAATTGCGTTGAATTGAAGCCGCACTGCCAAAGTCGACCGTCTCCGAGCATCCAGCGGGCAAACATCAAGTAACGACGGTCAGTACTATGCGTCCATCAACGATTTCCAATATTTCAACCAATTATAAACCCGCAAATCCCTTTTCCACAAAGTTTTAACGATTTCTTTTACAATCTTTGAATTTCCCTTCCTCTTGCTCGTTCGTGGATGATAATTTTTCTGCTATTCGAATCAAAACCGATAAAAGTTTATTATAGATTCTACAAATTTGCCGTCGGAAGTTTCAGTTCTCTGAAACTCTGTCTTCTCATGGATGCAAATTTTGCAGACATTTAATCGAACACTATGGCTTCACGAGGGGCAAACGTGGTGCTCTCGAGGGCGAACAGGATGAAGACGAAGTTGCAATCAGCACTATCAGCGAGTTTTCTGGAAATCGAGGACGTTTCGCACCAGCACGCTGGGCATGCGGCTGTGAAGGGCAGCGATGGAGAGACTCATTTCAATGTAAAGATAGTGTCTCCAAAATTTGAAGGGCAGAGCCTTGTGAAGCGCCATAGAATGGTGTATGATTTGTTGGCTGATGAGCTTCAGTCTGGATTGCATGCAATTTCAATCGTGGCAAAGACTCCCCAAGAAACTGGAGCGAAATGATGTTCAGATTCGCCTCACAGTGTGAGTTTTCAAATGAACTTTTAGCTTAGAATTGTAAGAATTTAGGCATTTATGCTGGCTCTCATCTGATGTTTTCTTGACCAGAAATGGTAATGAAAGGTGCAAGAGTTTTCAAATGGCAAGTTTTGTTTGAGATTGTGTACTCTTAGAATTTGTGTGGTTGAATCTGAAATAATCATAAGCTGCTATTTAACTTCATGGGATGAGTTAAAAGCTCTTAAATGCCATGGAAAATCTTCTGTTGTTTATCACAACTCACAAGGCACTCTGAGGGAAGAATGCAACTTAGAGAACAATGAATGTCTTTTGATTTAATAGCTGTTACTTTACCTCACACTCCTTTTTCTGTCCCTAAAAATGCAAACTGTCTTAACTGTGCTGTTTATTTCATATTTTATTAGAGTTATAATTTTAAAGTAGTTGCAATTGAACTTCTTTCACTTTTGTTGGGTCTAAATCCCTACCAATACCCTATTTTGTTGTCGTATTACACATTGAATGGTTTCTAATCCAAAAGGCCAAAACAGATGAAACGTTTGATTATATATTTTGTCCCCAT

mRNA sequence

ATTTTCTCTTCAATACCGAATTGCGTTGAATTGAAGCCGCACTGCCAAAGTCGACCGTCTCCGAGCATCCAGCGGGCAAACATCAAGTAACGACGACATTTAATCGAACACTATGGCTTCACGAGGGGCAAACGTGGTGCTCTCGAGGGCGAACAGGATGAAGACGAAGTTGCAATCAGCACTATCAGCGAGTTTTCTGGAAATCGAGGACGTTTCGCACCAGCACGCTGGGCATGCGGCTGTGAAGGGCAGCGATGGAGAGACTCATTTCAATGTAAAGATAGTGTCTCCAAAATTTGAAGGGCAGAGCCTTGTGAAGCGCCATAGAATGGTGTATGATTTGTTGGCTGATGAGCTTCAGTCTGGATTGCATGCAATTTCAATCGTGGCAAAGACTCCCCAAGAAACTGGAGCGAAATGATGTTCAGATTCGCCTCACAGTGTGAGTTTTCAAATGAACTTTTAGCTTAGAATTGTAAGAATTTAGGCATTTATGCTGGCTCTCATCTGATGTTTTCTTGACCAGAAATGGTAATGAAAGGTGCAAGAGTTTTCAAATGGCAAGTTTTGTTTGAGATTGTGTACTCTTAGAATTTGTGTGGTTGAATCTGAAATAATCATAAGCTGCTATTTAACTTCATGGGATGAGTTAAAAGCTCTTAAATGCCATGGAAAATCTTCTGTTGTTTATCACAACTCACAAGGCACTCTGAGGGAAGAATGCAACTTAGAGAACAATGAATGTCTTTTGATTTAATAGCTGTTACTTTACCTCACACTCCTTTTTCTGTCCCTAAAAATGCAAACTGTCTTAACTGTGCTGTTTATTTCATATTTTATTAGAGTTATAATTTTAAAGTAGTTGCAATTGAACTTCTTTCACTTTTGTTGGGTCTAAATCCCTACCAATACCCTATTTTGTTGTCGTATTACACATTGAATGGTTTCTAATCCAAAAGGCCAAAACAGATGAAACGTTTGATTATATATTTTGTCCCCAT

Coding sequence (CDS)

ATGGCTTCACGAGGGGCAAACGTGGTGCTCTCGAGGGCGAACAGGATGAAGACGAAGTTGCAATCAGCACTATCAGCGAGTTTTCTGGAAATCGAGGACGTTTCGCACCAGCACGCTGGGCATGCGGCTGTGAAGGGCAGCGATGGAGAGACTCATTTCAATGTAAAGATAGTGTCTCCAAAATTTGAAGGGCAGAGCCTTGTGAAGCGCCATAGAATGGTGTATGATTTGTTGGCTGATGAGCTTCAGTCTGGATTGCATGCAATTTCAATCGTGGCAAAGACTCCCCAAGAAACTGGAGCGAAATGA

Protein sequence

MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSPKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK

Homology

[Close]

BLAST of Tan0013836.1 vs. ExPASy Swiss-Prot
Match: Q84W65 (SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SUFE1 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-28
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 5   GANVVL--SRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGS---DGETHFNVKIVS 64
           G+NVV   SR  R++ KL+  L    LE+EDVS+QHAGHAAV+GS   DGETHFN++IVS
Sbjct: 272 GSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVS 331

Query: 65  PKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQE 99
             F+G+SLVKRHR++YDLL DEL+SGLHA+SIVAKTP E
Sbjct: 332 DAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370

[Close]

BLAST of Tan0013836.1 vs. ExPASy Swiss-Prot
Match: Q682I1 (Protein BOLA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BOLA1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-25
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 6   ANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKG-SDGETHFNVKIVSPKFEG 65
           +  + +RA+RM+ KLQ  L    L IEDVS+QHAGHA +KG +D ETHFNVKIVS  FEG
Sbjct: 62  SGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEG 121

Query: 66  QSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
            +LVKRHR+VY LL +EL +GLHA+SIV+KTP E+ +K
Sbjct: 122 MNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSK 159

[Close]

BLAST of Tan0013836.1 vs. ExPASy Swiss-Prot
Match: Q3E793 (BolA-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BOL1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 35  SHQHAGHAAVKGS-DGETHFNVKIVSPKFEGQSLVKRHRMVYDLLADEL--QSGLHAISI 94
           SH+H GHA V+G+   ETHF +++VS KFEG  L +RHRMVY LL DE+   +G+HA+ +
Sbjct: 38  SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQL 97

Query: 95  VAKTPQETGAK 103
             KTPQE  +K
Sbjct: 98  SLKTPQEYESK 108

[Close]

BLAST of Tan0013836.1 vs. ExPASy Swiss-Prot
Match: Q12238 (UV-induced protein uvi31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=uvi31 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-13
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 10  LSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKG--SDGETHFNVKIVSPKFEGQSL 69
           + R +R+   L  AL    + + + S++H+ H A+KG     ETHF ++IVSP+F G S 
Sbjct: 9   MGRQDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSR 68

Query: 70  VKRHRMVYDLLADELQSGLHAISIV-AKTPQE 99
           V RHR+VY LL DE   GLHA+ I  +KTP E
Sbjct: 69  VARHRLVYGLLKDEFDGGLHALQITSSKTPDE 100

[Close]

BLAST of Tan0013836.1 vs. ExPASy Swiss-Prot
Match: Q5RCE5 (BolA-like protein 1 OS=Pongo abelii OX=9601 GN=BOLA1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-12
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 3   SRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSPKF 62
           S G+  V      ++TKL+ ALS   LE+ + S    GHA   GS  ETHF V +VS +F
Sbjct: 23  SAGSGAVGPVEAAIRTKLEQALSPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRF 82

Query: 63  EGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETG 101
           EG S ++RHR+++  LA+EL   +HA++I A+TP + G
Sbjct: 83  EGLSPLQRHRLIHAALAEELAGPVHALAIQARTPAQWG 115

[Close]

BLAST of Tan0013836.1 vs. NCBI nr
Match: XP_022994950.1 (protein BOLA1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 98/102 (96.08%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSAS LEIEDVSHQHAGHA VKGSDGETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASVLEIEDVSHQHAGHAGVKGSDGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
            FEGQSLVKRHRMVYD LADELQSGLHAISIVAKTPQETGAK
Sbjct: 61  NFEGQSLVKRHRMVYDALADELQSGLHAISIVAKTPQETGAK 102

[Close]

BLAST of Tan0013836.1 vs. NCBI nr
Match: KGN64204.1 (hypothetical protein Csa_014195 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.2e-44
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSAS LEIEDVSHQHAGHAAVKGS GETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
           KFEGQSLVKRHRMVYD LA+ELQSGLHAISIVAKTPQETGAK
Sbjct: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 102

[Close]

BLAST of Tan0013836.1 vs. NCBI nr
Match: TYJ99061.1 (protein BOLA1 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSAS LEIEDVSHQHAGHAAVKGS GETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASSLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGA 102
           KFEGQSLVKRHRMVYD LA+ELQSGLHAISIVAKTPQETGA
Sbjct: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 101

[Close]

BLAST of Tan0013836.1 vs. NCBI nr
Match: XP_028756592.1 (protein BOLA1, chloroplastic-like [Prosopis alba])

HSP 1 Score: 170.6 bits (431), Expect = 6.9e-39
Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDG-ETHFNVKIVS 60
           MASRGAN++LSRANR+KTKLQSAL A+ LE+EDVS+QHAGHAA+KG+ G ETHFN+KIVS
Sbjct: 1   MASRGANMMLSRANRIKTKLQSALEATVLEVEDVSYQHAGHAAMKGTSGQETHFNLKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
           PKF+GQSLVKRHRMVYDLLADELQSGLHA+SIVAKTPQET AK
Sbjct: 61  PKFDGQSLVKRHRMVYDLLADELQSGLHALSIVAKTPQETSAK 103

[Close]

BLAST of Tan0013836.1 vs. NCBI nr
Match: XP_028779098.1 (protein BOLA1, chloroplastic-like [Prosopis alba])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDG-ETHFNVKIVS 60
           MASRGAN++LSRANR+KTKLQSAL A+ LE+EDVS+QHAGHAA+KG+ G ETHFN+KIVS
Sbjct: 1   MASRGANMMLSRANRIKTKLQSALEATVLEVEDVSYQHAGHAAMKGTSGQETHFNLKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
           PKF+GQSLVKRHRMVYDLLADELQSGLHA+SIVAKTPQET AK
Sbjct: 61  PKFDGQSLVKRHRMVYDLLADELQSGLHALSIVAKTPQETPAK 103

[Close]

BLAST of Tan0013836.1 vs. ExPASy TrEMBL
Match: A0A6J1K2R4 (protein BOLA1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490536 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.0e-45
Identity = 98/102 (96.08%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSAS LEIEDVSHQHAGHA VKGSDGETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASVLEIEDVSHQHAGHAGVKGSDGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
            FEGQSLVKRHRMVYD LADELQSGLHAISIVAKTPQETGAK
Sbjct: 61  NFEGQSLVKRHRMVYDALADELQSGLHAISIVAKTPQETGAK 102

[Close]

BLAST of Tan0013836.1 vs. ExPASy TrEMBL
Match: A0A0A0LT67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043070 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSAS LEIEDVSHQHAGHAAVKGS GETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
           KFEGQSLVKRHRMVYD LA+ELQSGLHAISIVAKTPQETGAK
Sbjct: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 102

[Close]

BLAST of Tan0013836.1 vs. ExPASy TrEMBL
Match: A0A5D3BK08 (Protein BOLA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002650 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSAS LEIEDVSHQHAGHAAVKGS GETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASSLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGA 102
           KFEGQSLVKRHRMVYD LA+ELQSGLHAISIVAKTPQETGA
Sbjct: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 101

[Close]

BLAST of Tan0013836.1 vs. ExPASy TrEMBL
Match: A0A444YZ34 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g074404 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.7e-39
Identity = 90/104 (86.54%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKG-SDGETHFNVKIVS 60
           MASRGA+VVLSRANR+K+KLQ+AL A+ LE++DVS+QHAGHAAVKG SD ETHFNVKIVS
Sbjct: 1   MASRGASVVLSRANRIKSKLQTALEATVLEVDDVSYQHAGHAAVKGNSDNETHFNVKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQE-TGAK 103
           PKF+GQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQE TGAK
Sbjct: 61  PKFDGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETTGAK 104

[Close]

BLAST of Tan0013836.1 vs. ExPASy TrEMBL
Match: A0A6P4DHI0 (protein BOLA1, chloroplastic OS=Arachis duranensis OX=130453 GN=LOC107489964 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.7e-39
Identity = 90/104 (86.54%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKG-SDGETHFNVKIVS 60
           MASRGA+VVLSRANR+K+KLQ+AL A+ LE++DVS+QHAGHAAVKG SD ETHFNVKIVS
Sbjct: 1   MASRGASVVLSRANRIKSKLQTALEATVLEVDDVSYQHAGHAAVKGNSDNETHFNVKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQE-TGAK 103
           PKF+GQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQE TGAK
Sbjct: 61  PKFDGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETTGAK 104

[Close]

BLAST of Tan0013836.1 vs. TAIR 10
Match: AT4G26500.1 (chloroplast sulfur E )

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-29
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 5   GANVVL--SRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGS---DGETHFNVKIVS 64
           G+NVV   SR  R++ KL+  L    LE+EDVS+QHAGHAAV+GS   DGETHFN++IVS
Sbjct: 272 GSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVS 331

Query: 65  PKFEGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQE 99
             F+G+SLVKRHR++YDLL DEL+SGLHA+SIVAKTP E
Sbjct: 332 DAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370

[Close]

BLAST of Tan0013836.1 vs. TAIR 10
Match: AT1G55805.1 (BolA-like family protein )

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-26
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 6   ANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKG-SDGETHFNVKIVSPKFEG 65
           +  + +RA+RM+ KLQ  L    L IEDVS+QHAGHA +KG +D ETHFNVKIVS  FEG
Sbjct: 62  SGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEG 121

Query: 66  QSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETGAK 103
            +LVKRHR+VY LL +EL +GLHA+SIV+KTP E+ +K
Sbjct: 122 MNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSK 159

[Close]

BLAST of Tan0013836.1 vs. TAIR 10
Match: AT5G17560.1 (BolA-like family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 16  MKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSPKFEGQSLVKRHRMVY 75
           M+ K++  L+A  + + D+S            DG  H  + +VS  FEGQS V R RMVY
Sbjct: 105 MELKIKEQLNAESVTVTDMS-----------GDGR-HVCINVVSSAFEGQSAVNRQRMVY 164

Query: 76  DLLADELQSGLHAI-SIVAKTPQE 99
             + +ELQ+ +HA+  +  KTP E
Sbjct: 165 KAIWEELQNVVHAVDQMTTKTPSE 176

[Close]

BLAST of Tan0013836.1 vs. TAIR 10
Match: AT5G09830.1 (BolA-like family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 15 RMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSDGETHFNVKIVSPKFEGQSLVKRHRMV 74
          +++  L S L    LE+ D+S          G  G + F V++VS +FEG+ L++RHRMV
Sbjct: 6  QVEASLTSKLKPIHLEVIDIS----------GGCGSS-FEVEVVSEQFEGKRLLERHRMV 65

Query: 75 YDLLADELQSGLHAISI-VAKTPQE 99
             L +E++  +HA+SI  A+TPQ+
Sbjct: 66 NAALEEEMKE-IHALSIKKAQTPQQ 78

The following BLAST results are available for this feature:

BLAST of Tan0013836.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W65	9.6e-28	65.66	SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q682I1	2.6e-25	61.22	Protein BOLA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BOLA1 PE=1 SV=1	[more]
Q3E793	1.8e-13	53.52	BolA-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=...	[more]
Q12238	2.3e-13	44.57	UV-induced protein uvi31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
Q5RCE5	4.3e-12	42.86	BolA-like protein 1 OS=Pongo abelii OX=9601 GN=BOLA1 PE=2 SV=1	[more]

BLAST of Tan0013836.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994950.1	1.9e-44	96.08	protein BOLA1, chloroplastic [Cucurbita maxima]	[more]
KGN64204.1	3.2e-44	96.08	hypothetical protein Csa_014195 [Cucumis sativus]	[more]
TYJ99061.1	2.1e-43	96.04	protein BOLA1 [Cucumis melo var. makuwa]	[more]
XP_028756592.1	6.9e-39	84.47	protein BOLA1, chloroplastic-like [Prosopis alba]	[more]
XP_028779098.1	1.2e-38	84.47	protein BOLA1, chloroplastic-like [Prosopis alba]	[more]

BLAST of Tan0013836.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K2R4	9.0e-45	96.08	protein BOLA1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490536 PE=3 SV...	[more]
A0A0A0LT67	1.5e-44	96.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043070 PE=3 SV=1	[more]
A0A5D3BK08	1.0e-43	96.04	Protein BOLA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002650...	[more]
A0A444YZ34	9.7e-39	86.54	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g074404 PE=3 SV=1	[more]
A0A6P4DHI0	9.7e-39	86.54	protein BOLA1, chloroplastic OS=Arachis duranensis OX=130453 GN=LOC107489964 PE=...	[more]

BLAST of Tan0013836.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26500.1	6.8e-29	65.66	chloroplast sulfur E	[more]
AT1G55805.1	1.9e-26	61.22	BolA-like family protein	[more]
AT5G17560.1	1.3e-06	36.90	BolA-like family protein	[more]
AT5G09830.1	1.1e-05	37.65	BolA-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036065	BolA-like superfamily	GENE3D	3.30.300.90		coord: 10..99 e-value: 9.8E-36 score: 124.1
IPR036065	BolA-like superfamily	SUPERFAMILY	82657	BolA-like	coord: 11..99
IPR002634	BolA protein	PIRSF	PIRSF003113	BolA	coord: 1..102 e-value: 7.9E-35 score: 117.5
IPR002634	BolA protein	PFAM	PF01722	BolA	coord: 20..98 e-value: 1.1E-32 score: 112.2
None	No IPR available	PANTHER	PTHR46230	FAMILY NOT NAMED	coord: 6..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0013836	Tan0013836	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013836.1-five_prime_utr	Tan0013836.1-five_prime_utr-LG05:72246778..72246872	five_prime_UTR
Tan0013836.1-five_prime_utr	Tan0013836.1-five_prime_utr-LG05:72247124..72247140	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013836.1-exon	Tan0013836.1-exon-LG05:72246778..72246872	exon
Tan0013836.1-exon	Tan0013836.1-exon-LG05:72247124..72248029	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013836.1-cds	Tan0013836.1-cds-LG05:72247141..72247449	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013836.1-three_prime_utr	Tan0013836.1-three_prime_utr-LG05:72247450..72248029	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0013836.1	Tan0013836.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003743	translation initiation factor activity