Tan0011818.1 (mRNA) Snake gourd v1

Overview


Name	Tan0011818.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ribosomal protein L16
Location	LG02: 59888941 .. 59889474 (-)
Sequence length	489
RNA-Seq Expression	Tan0011818.1
Synteny	Tan0011818.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTAACCGTAAAATCGATTATGCTCTGCGGAAGTATCTACTCGTTATAGAATCTCGGGTGTCAAAGTGTGGATTTATATAAAAAAAGGGACGTGTTATATCCAAACGTAAGAAATATAGTAAATATCGTAAAGGCGGATGTAGTAGGGGTTGCAAACCTGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTCGAAAGGTGTCGTCATTCATATCGAGCCATTGAAGCGGTAGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCGGACAATTTCAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGAAACCTACGTGTCGAAATGGGGCGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACTGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATAAACCATGTTCGTCAACCAAGTTTGTTCAAGTGGTCGTAACGTAA

mRNA sequence

ATGTATTTAACCGTAAAATCGATTATGCTCTGCGGAAGTATCTACTCGGACGTGTTATATCCAAACGTAAGAAATATAGTAAATATCGTAAAGGCGGATGTAGTAGGGGTTGCAAACCTGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTCGAAAGGTGTCGTCATTCATATCGAGCCATTGAAGCGGTAGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCGGACAATTTCAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGAAACCTACGTGTCGAAATGGGGCGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACTGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATAAACCATGTTCGTCAACCAAGTTTGTTCAAGTGGTCGTAACGTAA

Coding sequence (CDS)

ATGTATTTAACCGTAAAATCGATTATGCTCTGCGGAAGTATCTACTCGGACGTGTTATATCCAAACGTAAGAAATATAGTAAATATCGTAAAGGCGGATGTAGTAGGGGTTGCAAACCTGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTCGAAAGGTGTCGTCATTCATATCGAGCCATTGAAGCGGTAGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCGGACAATTTCAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGAAACCTACGTGTCGAAATGGGGCGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACTGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATAAACCATGTTCGTCAACCAAGTTTGTTCAAGTGGTCGTAACGTAA

Protein sequence

MYLTVKSIMLCGSIYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTISRNGKIWVRVLADLPITGNLRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQVVVT

Homology

[Close]

BLAST of Tan0011818.1 vs. ExPASy Swiss-Prot
Match: P46801 (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-33
Identity = 96/177 (54.24%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CGS    I  DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYPLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKCRCSRGCEPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTISRNGKIWVRVLADLPITG 120
             L       K     R SYRAIEA                  RN KIWVRVLADLPITG
Sbjct: 67  TQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITG 126

Query: 121 N-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
               V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAA LAAHKPCSSTKFVQ
Sbjct: 127 KPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQ 183

[Close]

BLAST of Tan0011818.1 vs. ExPASy Swiss-Prot
Match: P27927 (60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-33
Identity = 96/177 (54.24%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CGS    I  DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYLLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKCRCSRGREPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTISRNGKIWVRVLADLPITG 120
             L       K     R SYRAIEA                  RN KIWVRVLADLPITG
Sbjct: 67  TQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQFRRNCKIWVRVLADLPITG 126

Query: 121 N-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
               V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAA LAAHKPCSSTKFVQ
Sbjct: 127 KPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQ 183

[Close]

BLAST of Tan0011818.1 vs. ExPASy Swiss-Prot
Match: P49389 (60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 7.1e-33
Identity = 78/105 (74.29%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 59  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKG 118
           R SYRAIEA       TI   + R +S    RN KIWVRVLADLPITG    V MGRGKG
Sbjct: 74  RLSYRAIEAAR---RATIGHSFRRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKG 133

Query: 119 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
           NPTGWIARVSTGQIPFEMDGVSL+NARQAA LAAHKPCSSTKFVQ
Sbjct: 134 NPTGWIARVSTGQIPFEMDGVSLANARQAARLAAHKPCSSTKFVQ 175

[Close]

BLAST of Tan0011818.1 vs. ExPASy Swiss-Prot
Match: Q95747 (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL16 PE=1 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 5.1e-31
Identity = 94/181 (51.93%), Postives = 100/181 (55.25%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CG----SIYSDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT+KSIML              CG        DVLYP         K           
Sbjct: 1   MYLTIKSIMLLWKYLLVTESQVSKCGFHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDG 60

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L      +K  +    SYRAIEA      R I   + R +S    RNGKIWVRV ADL
Sbjct: 61  TKLGFGRYGIKSCKAGCLSYRAIEAA----RRAIIGHFHRAMSGQFRRNGKIWVRVFADL 120

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWIARVSTGQI FEMDGVSL+NARQAATLAAHK C STKFV
Sbjct: 121 PITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLANARQAATLAAHKLCLSTKFV 177

[Close]

BLAST of Tan0011818.1 vs. ExPASy Swiss-Prot
Match: Q04715 (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 62/89 (69.66%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 59  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKG 118
           R SYRAIEA      R I   + R +S    RNGKIWVRVLAD+PITG    V MGRGKG
Sbjct: 69  RLSYRAIEAA----RRAIIGHFHRAMSGQFRRNGKIWVRVLADIPITGKPTEVRMGRGKG 128

Query: 119 NPTGWIARVSTGQIPFEMDGVSLSNARQA 143
           NPTGWIARVS GQI FEMDGVSLSNARQA
Sbjct: 129 NPTGWIARVSRGQILFEMDGVSLSNARQA 153

[Close]

BLAST of Tan0011818.1 vs. NCBI nr
Match: YP_009498093.1 (ribosomal protein L16 [Bombax ceiba] >AWT07995.1 ribosomal protein L16 [Bombax ceiba])

HSP 1 Score: 149.4 bits (376), Expect = 2.6e-32
Identity = 100/181 (55.25%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CG +      DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYLLVTEYQVSKCGFLIVKKRGDVLYPKRTKYSKYRKGRCSRGCKPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L       K  +  R SYRAIEA      R I   + R +S    RNGKIWVRVLADL
Sbjct: 67  TKLGFGRYGTKSCKAGRLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADL 126

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
Sbjct: 127 PITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 183

[Close]

BLAST of Tan0011818.1 vs. NCBI nr
Match: QKS75109.1 (ribosomal protein L16 [Campynemanthe viridiflora])

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-32
Identity = 96/177 (54.24%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTV 60
           MY  +KSIML              CGS    I  DVLYP         K           
Sbjct: 1   MYFIIKSIMLLRKYLLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKGRCSRGREPDG 60

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTISRNGKIWVRVLADLPITG 120
             L       K     R SYRAIEA                  RNGKIWVRVLADLPITG
Sbjct: 61  TQLGFGRYGTKSGRAGRLSYRAIEAARRATIGHFHRAMSGQFRRNGKIWVRVLADLPITG 120

Query: 121 N-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
             + V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Sbjct: 121 KPIEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 177

[Close]

BLAST of Tan0011818.1 vs. NCBI nr
Match: QHD18539.1 (ribosomal protein L16 [Xanthoceras sorbifolium])

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-32
Identity = 81/105 (77.14%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 59  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKG 118
           R SYRAIEA      R I   + R +S    RNGKIWVRVLADLPITG    V MGRGKG
Sbjct: 83  RLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKG 142

Query: 119 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
           NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Sbjct: 143 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 183

[Close]

BLAST of Tan0011818.1 vs. NCBI nr
Match: YP_009412589.1 (ribosomal protein L16 [Hibiscus cannabinus] >ASK40007.1 ribosomal protein L16 [Hibiscus cannabinus])

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-32
Identity = 99/181 (54.70%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CG +      DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYLLVTEYQVSKCGFLIVKKRGDVLYPKRTKYSKYRKGRCSRGCKPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L       K  +  R SYRAIEA      R I   + R +S    RNGKIWVRVLADL
Sbjct: 67  TKLGFGRYGTKSCKAGRLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADL 126

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWI+RVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
Sbjct: 127 PITGKPTEVRMGRGKGNPTGWISRVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 183

[Close]

BLAST of Tan0011818.1 vs. NCBI nr
Match: YP_004237269.1 (ribosomal protein L16 [Ricinus communis] >ADW96033.1 ribosomal protein L16 [Ricinus communis] >EEF23316.1 60S ribosomal protein L16, putative [Ricinus communis] >BAO50921.1 ribosomal protein L16 [Hevea brasiliensis])

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-32
Identity = 81/105 (77.14%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 59  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKG 118
           R SYRAIEA      R I   + R +S    RNGKIWVRVLADLPITG    V MGRGKG
Sbjct: 42  RLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKG 101

Query: 119 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
           NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Sbjct: 102 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 142

[Close]

BLAST of Tan0011818.1 vs. ExPASy TrEMBL
Match: A0A344A016 (Ribosomal protein L16 OS=Bombax ceiba OX=45325 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 100/181 (55.25%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CG +      DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYLLVTEYQVSKCGFLIVKKRGDVLYPKRTKYSKYRKGRCSRGCKPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L       K  +  R SYRAIEA      R I   + R +S    RNGKIWVRVLADL
Sbjct: 67  TKLGFGRYGTKSCKAGRLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADL 126

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
Sbjct: 127 PITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 183

[Close]

BLAST of Tan0011818.1 vs. ExPASy TrEMBL
Match: A0A220T1I5 (Ribosomal protein L16 OS=Hibiscus cannabinus OX=229543 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 99/181 (54.70%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CG +      DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYLLVTEYQVSKCGFLIVKKRGDVLYPKRTKYSKYRKGRCSRGCKPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L       K  +  R SYRAIEA      R I   + R +S    RNGKIWVRVLADL
Sbjct: 67  TKLGFGRYGTKSCKAGRLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADL 126

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWI+RVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
Sbjct: 127 PITGKPTEVRMGRGKGNPTGWISRVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 183

[Close]

BLAST of Tan0011818.1 vs. ExPASy TrEMBL
Match: A0A1C9I9R6 (Ribosomal protein L16 OS=Corchorus capsularis OX=210143 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 100/181 (55.25%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT KSIML              CG +      DVLYP         K           
Sbjct: 7   MYLTRKSIMLLRKYPLVTEYQVSKCGFLIVKKRGDVLYPKRTKYSKYRKGRCSRGYKPDG 66

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L       K  +  R SYRAIEA      R I   + R +S    RNGKIWVRVLADL
Sbjct: 67  TKLSFGRYGTKSGKAGRLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADL 126

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
Sbjct: 127 PITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 183

[Close]

BLAST of Tan0011818.1 vs. ExPASy TrEMBL
Match: A0A7G3V4T4 (Ribosomal protein L16 OS=Campynemanthe viridiflora OX=117931 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 96/177 (54.24%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTV 60
           MY  +KSIML              CGS    I  DVLYP         K           
Sbjct: 1   MYFIIKSIMLLRKYLLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKGRCSRGREPDG 60

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTISRNGKIWVRVLADLPITG 120
             L       K     R SYRAIEA                  RNGKIWVRVLADLPITG
Sbjct: 61  TQLGFGRYGTKSGRAGRLSYRAIEAARRATIGHFHRAMSGQFRRNGKIWVRVLADLPITG 120

Query: 121 N-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
             + V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Sbjct: 121 KPIEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 177

[Close]

BLAST of Tan0011818.1 vs. ExPASy TrEMBL
Match: A0A7H1CQU0 (Ribosomal protein L16 OS=Sapindus mukorossi OX=57655 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 81/105 (77.14%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 59  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKG 118
           R SYRAIEA      R I   + R +S    RNGKIWVRVLADLPITG    V MGRGKG
Sbjct: 77  RLSYRAIEAA----RRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKG 136

Query: 119 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 159
           NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Sbjct: 137 NPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ 177

[Close]

BLAST of Tan0011818.1 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 147.5 bits (371), Expect = 9.2e-36
Identity = 98/181 (54.14%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 1   MYLTVKSIML--------------CG----SIYSDVLYPNVRNIVNIVKADVVGVANLTV 60
           MYLT+KSIML              CG        DVLYP         K           
Sbjct: 1   MYLTIKSIMLLRKYLLVTESQVSKCGFHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDG 60

Query: 61  HNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADL 120
             L       K  +  R SYRAIEA      R I   + R +S    RNGKIWVRV ADL
Sbjct: 61  TKLGFGRYGTKSCKAGRLSYRAIEAA----RRAIIGHFHRAMSGQFRRNGKIWVRVFADL 120

Query: 121 PITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV 159
           PITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSL+NARQAATLAAHKPCSSTKFV
Sbjct: 121 PITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAATLAAHKPCSSTKFV 177

[Close]

BLAST of Tan0011818.1 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-12
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 82  RTISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNAR 141
           R + R GKIWVR+  D P+T       MG GKG+P  W+A V  G+I +EM GV  + AR
Sbjct: 56  RNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIAR 115

Query: 142 QAATLAAHKPCSSTKFV 158
           +A ++AA K    T+F+
Sbjct: 116 KAISIAASKMPIKTQFI 132

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BLAST of Tan0011818.1 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-10
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 82  RTISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNAR 141
           R I R   + V + AD P+T       MGRGKG P  W+A V  G+I +EM GVS   AR
Sbjct: 883 RNIGRGLTVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAR 942

Query: 142 QAATLAAHKPCSSTKFV 158
           +A ++AA K  + TKF+
Sbjct: 943 EAISIAASKLPAKTKFI 959

The following BLAST results are available for this feature:

BLAST of Tan0011818.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46801	1.1e-33	54.24	60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P27927	1.9e-33	54.24	60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1	[more]
P49389	7.1e-33	74.29	60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3...	[more]
Q95747	5.1e-31	51.93	60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
Q04715	2.3e-23	69.66	60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=...	[more]

BLAST of Tan0011818.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009498093.1	2.6e-32	55.25	ribosomal protein L16 [Bombax ceiba] >AWT07995.1 ribosomal protein L16 [Bombax c...	[more]
QKS75109.1	5.8e-32	54.24	ribosomal protein L16 [Campynemanthe viridiflora]	[more]
QHD18539.1	5.8e-32	77.14	ribosomal protein L16 [Xanthoceras sorbifolium]	[more]
YP_009412589.1	5.8e-32	54.70	ribosomal protein L16 [Hibiscus cannabinus] >ASK40007.1 ribosomal protein L16 [H...	[more]
YP_004237269.1	5.8e-32	77.14	ribosomal protein L16 [Ricinus communis] >ADW96033.1 ribosomal protein L16 [Rici...	[more]

BLAST of Tan0011818.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A344A016	1.3e-32	55.25	Ribosomal protein L16 OS=Bombax ceiba OX=45325 GN=rpl16 PE=3 SV=1	[more]
A0A220T1I5	2.8e-32	54.70	Ribosomal protein L16 OS=Hibiscus cannabinus OX=229543 GN=rpl16 PE=3 SV=1	[more]
A0A1C9I9R6	2.8e-32	55.25	Ribosomal protein L16 OS=Corchorus capsularis OX=210143 GN=rpl16 PE=3 SV=1	[more]
A0A7G3V4T4	2.8e-32	54.24	Ribosomal protein L16 OS=Campynemanthe viridiflora OX=117931 GN=rpl16 PE=3 SV=1	[more]
A0A7H1CQU0	2.8e-32	77.14	Ribosomal protein L16 OS=Sapindus mukorossi OX=57655 GN=rpl16 PE=3 SV=1	[more]

BLAST of Tan0011818.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00080.1	9.2e-36	54.14	ribosomal protein L16	[more]
ATCG00790.1	9.3e-12	44.16	ribosomal protein L16	[more]
AT2G28830.1	6.6e-10	44.16	PLANT U-BOX 12	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 60..71 score: 34.67 coord: 113..142 score: 50.47
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 26..159
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 35..157 e-value: 1.1E-22 score: 80.5
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 49..157 e-value: 6.14776E-27 score: 95.6363
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 43..160 e-value: 1.5E-27 score: 97.8
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 39..157
None	No IPR available	PANTHER	PTHR12220:SF21	60S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 26..159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0011818	Tan0011818	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0011818.1-exon	Tan0011818.1-exon-LG02:59888941..59889382	exon
Tan0011818.1-exon	Tan0011818.1-exon-LG02:59889428..59889474	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0011818.1-cds	Tan0011818.1-cds-LG02:59888941..59889382	CDS
Tan0011818.1-cds	Tan0011818.1-cds-LG02:59889428..59889474	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0011818.1	Tan0011818.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome