Tan0010638.1 (mRNA) Snake gourd v1

Overview


Name	Tan0010638.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	zinc transporter 7-like
Location	LG02: 85792258 .. 85793295 (+)
Sequence length	1038
RNA-Seq Expression	Tan0010638.1
Synteny	Tan0010638.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGAACTACCCTTGACTAAGACAACAACATGGAGGGAACATTTCACTATTGTTATGAAAGAAAGAATAAATTGTGAGCATGAAATAGGAAGGCCTAAAAGGCACTTAAACAGATAATATAAATAGCCAAAACCACAACACCTTTCATCACAGCTCAAACTCACAAAACTCATACAAACTAAGCAAACTAACCTCCCTTTCTCACAAAAATGGCCTGCCGTTCCGTCAACAACCTCCGACTCTCCAAGGATGACATGAGGAGAGTCTACCGAGACCAAGCTCGCAGACGAAGAGACGGCGTTAAAATCGGGCACATCATCGAAATCTTGGAAATCCTCGTACCCGTCATCCCCCACTTCTTTGGTCAGGCTCGTGTCAATGCTTATGTCGATGGCGATAACTATAATCGATGTAGCATGGGTTATTCGGGTGAGGATGACATGTCTTTCCATAGCAATGCCCGCTGTGGCATGGGCATGGCTTCTCGCGATGACATCGGTAGCGATCGCTATGGCCATGGCATGTCTTATGGCAATATTGATGGTAAGGTTCACCACAGGATGGCTCATGCTGAGGATTATGGCGATCGCATCATTTCAGAGGAGGAGTTTGAAAGGCTCCTTGACTATGCCGAGCAGCGCAATGTCATGATGTATTGATGAATAGGTGTGACAACACCCCTATATATATGTTGTTGTACTCTTATCGTTTTAAGCTTTCAAATATCACTAATAAAATAAAAGGACTGCCTTGCTAGTCCTTCTTTGCTTGCCTAGCTTGATCGAAAAGTTTAAAAAGAAAAACCTTCAATAATGGCAAGTTATTCAACGAGGTTGTCATGTTCGCTGATAACCCTTCAATTCAAAATTAAAATACTTTTACAATTTTTCTCTCATACATCCAACAATGTAAGACTGTTAGCTTCATCGTGACAACCTCCTCGATAATTTCTCTCAATATCGGGTAGTTAAGACTCTGTTTGATAATGTTTTGGTTTTTATTTTTTATTTTTTATTTTTAAATTAAGCTTGTAAGCGG

mRNA sequence

CAGGAACTACCCTTGACTAAGACAACAACATGGAGGGAACATTTCACTATTGTTATGAAAGAAAGAATAAATTGTGAGCATGAAATAGGAAGGCCTAAAAGGCACTTAAACAGATAATATAAATAGCCAAAACCACAACACCTTTCATCACAGCTCAAACTCACAAAACTCATACAAACTAAGCAAACTAACCTCCCTTTCTCACAAAAATGGCCTGCCGTTCCGTCAACAACCTCCGACTCTCCAAGGATGACATGAGGAGAGTCTACCGAGACCAAGCTCGCAGACGAAGAGACGGCGTTAAAATCGGGCACATCATCGAAATCTTGGAAATCCTCGTACCCGTCATCCCCCACTTCTTTGGTCAGGCTCGTGTCAATGCTTATGTCGATGGCGATAACTATAATCGATGTAGCATGGGTTATTCGGGTGAGGATGACATGTCTTTCCATAGCAATGCCCGCTGTGGCATGGGCATGGCTTCTCGCGATGACATCGGTAGCGATCGCTATGGCCATGGCATGTCTTATGGCAATATTGATGGTAAGGTTCACCACAGGATGGCTCATGCTGAGGATTATGGCGATCGCATCATTTCAGAGGAGGAGTTTGAAAGGCTCCTTGACTATGCCGAGCAGCGCAATGTCATGATGTATTGATGAATAGGTGTGACAACACCCCTATATATATGTTGTTGTACTCTTATCGTTTTAAGCTTTCAAATATCACTAATAAAATAAAAGGACTGCCTTGCTAGTCCTTCTTTGCTTGCCTAGCTTGATCGAAAAGTTTAAAAAGAAAAACCTTCAATAATGGCAAGTTATTCAACGAGGTTGTCATGTTCGCTGATAACCCTTCAATTCAAAATTAAAATACTTTTACAATTTTTCTCTCATACATCCAACAATGTAAGACTGTTAGCTTCATCGTGACAACCTCCTCGATAATTTCTCTCAATATCGGGTAGTTAAGACTCTGTTTGATAATGTTTTGGTTTTTATTTTTTATTTTTTATTTTTAAATTAAGCTTGTAAGCGG

Coding sequence (CDS)

ATGGCCTGCCGTTCCGTCAACAACCTCCGACTCTCCAAGGATGACATGAGGAGAGTCTACCGAGACCAAGCTCGCAGACGAAGAGACGGCGTTAAAATCGGGCACATCATCGAAATCTTGGAAATCCTCGTACCCGTCATCCCCCACTTCTTTGGTCAGGCTCGTGTCAATGCTTATGTCGATGGCGATAACTATAATCGATGTAGCATGGGTTATTCGGGTGAGGATGACATGTCTTTCCATAGCAATGCCCGCTGTGGCATGGGCATGGCTTCTCGCGATGACATCGGTAGCGATCGCTATGGCCATGGCATGTCTTATGGCAATATTGATGGTAAGGTTCACCACAGGATGGCTCATGCTGAGGATTATGGCGATCGCATCATTTCAGAGGAGGAGTTTGAAAGGCTCCTTGACTATGCCGAGCAGCGCAATGTCATGATGTATTGA

Protein sequence

MACRSVNNLRLSKDDMRRVYRDQARRRRDGVKIGHIIEILEILVPVIPHFFGQARVNAYVDGDNYNRCSMGYSGEDDMSFHSNARCGMGMASRDDIGSDRYGHGMSYGNIDGKVHHRMAHAEDYGDRIISEEEFERLLDYAEQRNVMMY

Homology

[Close]

BLAST of Tan0010638.1 vs. NCBI nr
Match: XP_023545419.1 (zinc transporter 7-A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545420.1 zinc transporter 7-A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-23
Identity = 81/161 (50.31%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQARRRRDG-VKIGHIIEILEILVPVIPHFFGQARVNAY 60
           MACRSV+NLR  +DD+  VYR  ARR R G VKI  IIEI+EIL P+IP FF       +
Sbjct: 1   MACRSVDNLR-CRDDLMNVYRANARRSRRGRVKIRDIIEIIEILGPIIPPFF-----QKH 60

Query: 61  VDGDNYNRC-SMGYS-GEDDMSFHSNARCGMGMASRD-DIGSDRYGHGMSYGNIDGKVHH 120
              +N++ C SMGY+  +DDM     +RCG GM+S D   GS  YGH   +G+  G  H 
Sbjct: 61  GGANNFSSCGSMGYARDQDDM----GSRCGFGMSSGDYGNGSGHYGHSHGHGHGHGHSHS 120

Query: 121 R--------MAHAEDYGDRIISEEEFERLLDYAEQRNVMMY 150
                    M H +DY D  ISEEEFE+LLDYAEQ NV MY
Sbjct: 121 HGESHYGMSMGHVDDYADHEISEEEFEKLLDYAEQCNVRMY 151

[Close]

BLAST of Tan0010638.1 vs. NCBI nr
Match: XP_022962401.1 (zinc transporter 7-like [Cucurbita moschata])

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-22
Identity = 80/157 (50.96%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQARRRRDG-VKIGHIIEILEILVPVIPHFFGQARVNAY 60
           MACRSV+NLR  +DD+  VYR  A R R G VKI  IIEI+EIL P+IPHFF       +
Sbjct: 1   MACRSVDNLR-CRDDLMNVYRANASRSRRGRVKIRDIIEIIEILGPIIPHFF-----KKH 60

Query: 61  VDGDNYNRC-SMGYS-GEDDMSFHSNARCGMGMASRD-DIGSDRYG--HGMSYGNIDGKV 120
              +N++ C SMGY+  +DDM     +R G GMAS +   GS  YG  HG  + +  G+ 
Sbjct: 61  GGANNFSSCGSMGYARDQDDM----GSRFGFGMASGEYGNGSGHYGHSHGHGHSHSHGES 120

Query: 121 HH--RMAHAEDYGDRIISEEEFERLLDYAEQRNVMMY 150
           H+   M H +DY D  ISEEEFE+LLDYAEQ NV MY
Sbjct: 121 HYGMSMGHVDDYADHEISEEEFEKLLDYAEQCNVRMY 147

[Close]

BLAST of Tan0010638.1 vs. NCBI nr
Match: KAG6598377.1 (hypothetical protein SDJN03_08155, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-21
Identity = 80/157 (50.96%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQARRRRDG-VKIGHIIEILEILVPVIPHFFGQARVNAY 60
           MACRSV+NLR  +DD+  VYR  ARR R G VKI  IIEI+EIL P+IP FF       +
Sbjct: 1   MACRSVDNLR-CRDDLMNVYRANARRSRRGRVKIRDIIEIIEILGPIIPPFF-----QKH 60

Query: 61  VDGDNYNRC-SMGYS-GEDDMSFHSNARCGMGMASRD-DIGSDRYG--HGMSYGNIDGKV 120
              +N++ C SMGY+  +DDM     +R G GMAS +   GS  YG  HG  + +  G+ 
Sbjct: 61  GGANNFSSCGSMGYARDQDDM----GSRFGFGMASGEYGNGSGHYGHSHGHGHSHSHGES 120

Query: 121 HH--RMAHAEDYGDRIISEEEFERLLDYAEQRNVMMY 150
           H+   M H +DY D  ISEEEFE+LLDYAEQ NV MY
Sbjct: 121 HYGMSMGHVDDYADHEISEEEFEKLLDYAEQCNVRMY 147

[Close]

BLAST of Tan0010638.1 vs. NCBI nr
Match: KGN62520.1 (hypothetical protein Csa_022281 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 81/166 (48.80%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQ---ARRRRDGVKIGHIIEILEILVPVIPHFFGQARVN 60
           MA RSVNNL+  KDDMRR YR++   +RRRR  +KI  II++LEI+ P+IPHFFG   ++
Sbjct: 1   MAFRSVNNLQFWKDDMRRAYREKVGSSRRRR--IKIRDIIDVLEIVGPIIPHFFGSNSLS 60

Query: 61  AYVD-----GDNYNRCSMGYSGEDDMSFHSNARCGMGMASRD--DIGSDRYG----HGMS 120
           A  D     G+N+   S G   +D  SFH    CG G   R   D+GS  YG    H   
Sbjct: 61  AGPDNYSNYGNNHMNGSYGRRDDDMHSFH----CGGGGGGRFGLDMGSGDYGNESRHYGG 120

Query: 121 YGNIDGKVHHRMAHAEDYGDRIISEEEFERLLDYAEQ---RNVMMY 150
            GN + +   RMA AEDY DR I+EEEFERLLD+AEQ    N  MY
Sbjct: 121 RGNGNSQYGMRMALAEDYYDREITEEEFERLLDFAEQSHNNNSRMY 160

[Close]

BLAST of Tan0010638.1 vs. NCBI nr
Match: KAG6598378.1 (hypothetical protein SDJN03_08156, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-13
Identity = 67/152 (44.08%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQARR-RRDGVKIGHIIEILEILVPVIPHFFGQARVNAY 60
           MACRSV+NLR  +DD+  VYR  A R RR  VKI  II I++IL PV+PHFF + R  A 
Sbjct: 1   MACRSVDNLR-CRDDLMNVYRANAHRSRRGSVKIRDIIGIIKILGPVVPHFF-ERRNGAN 60

Query: 61  VDGDNYNRCSMGYSGEDDMSFHSNARCGMGMASRDDIGSDRYGHGMSYGNIDGKVHH--R 120
           V         M  +    +         + MA      +  +GHG  + +  G+ H+   
Sbjct: 61  VTLVVVAAWVMLVTRMTWVPALGLVWLLVIMAMVAATMATAHGHGHGHSHSHGESHYGMS 120

Query: 121 MAHAEDYGDRIISEEEFERLLDYAEQRNVMMY 150
           M H +DY D  ISEEEFERLLDYAEQ NV MY
Sbjct: 121 MGHVDDYADHEISEEEFERLLDYAEQCNVKMY 150

[Close]

BLAST of Tan0010638.1 vs. ExPASy TrEMBL
Match: A0A6J1HD14 (zinc transporter 7-like OS=Cucurbita moschata OX=3662 GN=LOC111462856 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.1e-22
Identity = 80/157 (50.96%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQARRRRDG-VKIGHIIEILEILVPVIPHFFGQARVNAY 60
           MACRSV+NLR  +DD+  VYR  A R R G VKI  IIEI+EIL P+IPHFF       +
Sbjct: 1   MACRSVDNLR-CRDDLMNVYRANASRSRRGRVKIRDIIEIIEILGPIIPHFF-----KKH 60

Query: 61  VDGDNYNRC-SMGYS-GEDDMSFHSNARCGMGMASRD-DIGSDRYG--HGMSYGNIDGKV 120
              +N++ C SMGY+  +DDM     +R G GMAS +   GS  YG  HG  + +  G+ 
Sbjct: 61  GGANNFSSCGSMGYARDQDDM----GSRFGFGMASGEYGNGSGHYGHSHGHGHSHSHGES 120

Query: 121 HH--RMAHAEDYGDRIISEEEFERLLDYAEQRNVMMY 150
           H+   M H +DY D  ISEEEFE+LLDYAEQ NV MY
Sbjct: 121 HYGMSMGHVDDYADHEISEEEFEKLLDYAEQCNVRMY 147

[Close]

BLAST of Tan0010638.1 vs. ExPASy TrEMBL
Match: A0A0A0LKW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359890 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.8e-21
Identity = 81/166 (48.80%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 1   MACRSVNNLRLSKDDMRRVYRDQ---ARRRRDGVKIGHIIEILEILVPVIPHFFGQARVN 60
           MA RSVNNL+  KDDMRR YR++   +RRRR  +KI  II++LEI+ P+IPHFFG   ++
Sbjct: 1   MAFRSVNNLQFWKDDMRRAYREKVGSSRRRR--IKIRDIIDVLEIVGPIIPHFFGSNSLS 60

Query: 61  AYVD-----GDNYNRCSMGYSGEDDMSFHSNARCGMGMASRD--DIGSDRYG----HGMS 120
           A  D     G+N+   S G   +D  SFH    CG G   R   D+GS  YG    H   
Sbjct: 61  AGPDNYSNYGNNHMNGSYGRRDDDMHSFH----CGGGGGGRFGLDMGSGDYGNESRHYGG 120

Query: 121 YGNIDGKVHHRMAHAEDYGDRIISEEEFERLLDYAEQ---RNVMMY 150
            GN + +   RMA AEDY DR I+EEEFERLLD+AEQ    N  MY
Sbjct: 121 RGNGNSQYGMRMALAEDYYDREITEEEFERLLDFAEQSHNNNSRMY 160

The following BLAST results are available for this feature:

BLAST of Tan0010638.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010638.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545419.1	7.7e-23	50.31	zinc transporter 7-A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545420....	[more]
XP_022962401.1	8.5e-22	50.96	zinc transporter 7-like [Cucurbita moschata]	[more]
KAG6598377.1	2.5e-21	50.96	hypothetical protein SDJN03_08155, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN62520.1	1.6e-20	48.80	hypothetical protein Csa_022281 [Cucumis sativus]	[more]
KAG6598378.1	3.2e-13	44.08	hypothetical protein SDJN03_08156, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0010638.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HD14	4.1e-22	50.96	zinc transporter 7-like OS=Cucurbita moschata OX=3662 GN=LOC111462856 PE=4 SV=1	[more]
A0A0A0LKW7	7.8e-21	48.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359890 PE=4 SV=1	[more]

BLAST of Tan0010638.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0010638	Tan0010638	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010638.1-five_prime_utr	Tan0010638.1-five_prime_utr-LG02:85792258..85792466	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010638.1-exon	Tan0010638.1-exon-LG02:85792258..85793295	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010638.1-cds	Tan0010638.1-cds-LG02:85792467..85792916	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010638.1-three_prime_utr	Tan0010638.1-three_prime_utr-LG02:85792917..85793295	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0010638.1	Tan0010638.1-protein	polypeptide