Tan0010326.1 (mRNA) Snake gourd v1

Overview


Name	Tan0010326.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein PAIR1 isoform X1
Location	LG10: 1957124 .. 1957947 (+)
Sequence length	288
RNA-Seq Expression	Tan0010326.1
Synteny	Tan0010326.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCTGAAGATAAACAAGGCCTGTGATCTCAGTTCTATCTCCGTTCTTCCTCCTCAATCCAGGTACGCATCGCTTCTTATTTATTTTCAGCGTTATCTTTTGTTTGTGTTGCAAGAATTCATGGAAAACAATGCGCAAAGAAGTTTAGATTGCAATGTTGTCATATTCAGTAGCTTGTCATTTTTTTCCCTTTATTTCCCGTGCTTCTAGCCGTTTATCAGAAGGAATTTATTGTGTCGGAGCTTTTAAGATATTGACATTTTCAATACTTTTTACTGCAGACAGCGAAATTTTTACTTACACAGCTTAGTTCGATTCGTTCTTTGATTGGATTTTCATGTTTATTGATACAAGATTCAGTTACTTTAAGCTTGGATTAAAAAAAAAACAGATGACTAAGAATTTGGAGTTTTCAGACTATAATCTTGTCATGAAATTGCAAGTTGAGTTCGCTGCAAACTTGATCCAATCTCTTATTTTACGTCATTATTTTCGAATCTGTTCCAGAGGAAACGCAAAAATATTCAAGGAAAATATGAGAATTTTCTCTTAATGTATTATAAAATGAAAATATATGAATGGTTTTGATGATCTTTAGGAGGTCAAATGCGTTAATCACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAGTCCTTTTCTCAGGGTCTGTCTTCTCAGCACGGCATGTATTCTCAGCTCTCTCAGAACTCTTTCGACGAAGTCGTGACAAATGAACAGGTGAATCTCGGTTCTTCTCTGGATTTTCAGGTTTTAAGACTTTGTTTGTCCATTAAGAAATGGAGGAAATGA

mRNA sequence

ATGCGGCTGAAGATAAACAAGGCCTGTGATCTCAGTTCTATCTCCGTTCTTCCTCCTCAATCCAGGAGGTCAAATGCGTTAATCACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAGTCCTTTTCTCAGGGTCTGTCTTCTCAGCACGGCATGTATTCTCAGCTCTCTCAGAACTCTTTCGACGAAGTCGTGACAAATGAACAGGTGAATCTCGGTTCTTCTCTGGATTTTCAGGTTTTAAGACTTTGTTTGTCCATTAAGAAATGGAGGAAATGA

Coding sequence (CDS)

ATGCGGCTGAAGATAAACAAGGCCTGTGATCTCAGTTCTATCTCCGTTCTTCCTCCTCAATCCAGGAGGTCAAATGCGTTAATCACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAGTCCTTTTCTCAGGGTCTGTCTTCTCAGCACGGCATGTATTCTCAGCTCTCTCAGAACTCTTTCGACGAAGTCGTGACAAATGAACAGGTGAATCTCGGTTCTTCTCTGGATTTTCAGGTTTTAAGACTTTGTTTGTCCATTAAGAAATGGAGGAAATGA

Protein sequence

MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQNSFDEVVTNEQVNLGSSLDFQVLRLCLSIKKWRK

Homology

[Close]

BLAST of Tan0010326.1 vs. ExPASy Swiss-Prot
Match: Q0WWX5 (Putative recombination initiation defects 3 OS=Arabidopsis thaliana OX=3702 GN=PRD3 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-10
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQH---GMYS 60
          M++ INKACDL SISV PP  RRS      Q + QLRSQ SQQSFSQG SS     G +S
Sbjct: 1  MKMNINKACDLKSISVFPPNLRRS---AEPQASQQLRSQQSQQSFSQGPSSSQRGCGGFS 60

Query: 61 QLSQNSFDEVVTNEQ 73
          Q++Q+S DE++ N+Q
Sbjct: 61 QMTQSSIDELLINDQ 72

[Close]

BLAST of Tan0010326.1 vs. ExPASy Swiss-Prot
Match: Q75RY2 (Protein PAIR1 OS=Oryza sativa subsp. japonica OX=39947 GN=PAIR1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 8.2e-05
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQ--SRRSNALITGQQAPQLRSQP-------SQQSFSQGLSS 60
          M+LK+NKACD++SISVLPP+     S A  +G  A  + SQP       SQQSFSQG S+
Sbjct: 1  MKLKMNKACDIASISVLPPRRTGGSSGASASGSVAVAVASQPRSQPLSQSQQSFSQGASA 60

Query: 61 Q--HGMYSQLSQNSFDE 67
             H   SQ SQ S D+
Sbjct: 61 SLLHSQ-SQFSQVSLDD 76

[Close]

BLAST of Tan0010326.1 vs. NCBI nr
Match: XP_038882627.1 (putative recombination initiation defects 3 isoform X1 [Benincasa hispida] >XP_038882635.1 putative recombination initiation defects 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPP SRRSNAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPHSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. NCBI nr
Match: XP_038882642.1 (putative recombination initiation defects 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPP SRRSNAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPHSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. NCBI nr
Match: XP_008438047.1 (PREDICTED: protein PAIR1 isoform X2 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRR NAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. NCBI nr
Match: XP_008438046.1 (PREDICTED: protein PAIR1 isoform X1 [Cucumis melo] >XP_016898943.1 PREDICTED: protein PAIR1 isoform X1 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRR NAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. NCBI nr
Match: XP_008438048.1 (PREDICTED: protein PAIR1 isoform X3 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRR NAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. ExPASy TrEMBL
Match: A0A1S4DSK1 (protein PAIR1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483272 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRR NAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. ExPASy TrEMBL
Match: A0A1S3AV35 (protein PAIR1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483272 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRR NAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. ExPASy TrEMBL
Match: A0A1S3AVJ5 (protein PAIR1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483272 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRR NAL TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRLNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTNEQ
Sbjct: 61 QNSFDEVVTNEQ 72

[Close]

BLAST of Tan0010326.1 vs. ExPASy TrEMBL
Match: A0A6J1D1C7 (protein PAIR1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016374 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRRSNA  TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRSNA-PTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTN+Q
Sbjct: 61 QNSFDEVVTNDQ 71

[Close]

BLAST of Tan0010326.1 vs. ExPASy TrEMBL
Match: A0A6J1D122 (protein PAIR1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016374 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60
          MRLKINKACDLSSISVLPPQSRRSNA  TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS
Sbjct: 1  MRLKINKACDLSSISVLPPQSRRSNA-PTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLS 60

Query: 61 QNSFDEVVTNEQ 73
          QNSFDEVVTN+Q
Sbjct: 61 QNSFDEVVTNDQ 71

[Close]

BLAST of Tan0010326.1 vs. TAIR 10
Match: AT1G01690.1 (putative recombination initiation defects 3 )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MRLKINKACDLSSISVLPPQSRRSNALITGQQAPQLRSQPSQQSFSQGLSSQH---GMYS 60
          M++ INKACDL SISV PP  RRS      Q + QLRSQ SQQSFSQG SS     G +S
Sbjct: 1  MKMNINKACDLKSISVFPPNLRRS---AEPQASQQLRSQQSQQSFSQGPSSSQRGCGGFS 60

Query: 61 QLSQNSFDEVVTNEQ 73
          Q++Q+S DE++ N+Q
Sbjct: 61 QMTQSSIDELLINDQ 72

The following BLAST results are available for this feature:

BLAST of Tan0010326.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WWX5	1.7e-10	56.00	Putative recombination initiation defects 3 OS=Arabidopsis thaliana OX=3702 GN=P...	[more]
Q75RY2	8.2e-05	49.35	Protein PAIR1 OS=Oryza sativa subsp. japonica OX=39947 GN=PAIR1 PE=1 SV=1	[more]

BLAST of Tan0010326.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882627.1	4.3e-27	97.22	putative recombination initiation defects 3 isoform X1 [Benincasa hispida] >XP_0...	[more]
XP_038882642.1	4.3e-27	97.22	putative recombination initiation defects 3 isoform X2 [Benincasa hispida]	[more]
XP_008438047.1	5.6e-27	97.22	PREDICTED: protein PAIR1 isoform X2 [Cucumis melo]	[more]
XP_008438046.1	5.6e-27	97.22	PREDICTED: protein PAIR1 isoform X1 [Cucumis melo] >XP_016898943.1 PREDICTED: pr...	[more]
XP_008438048.1	5.6e-27	97.22	PREDICTED: protein PAIR1 isoform X3 [Cucumis melo]	[more]

BLAST of Tan0010326.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSK1	2.7e-27	97.22	protein PAIR1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483272 PE=4 SV=1	[more]
A0A1S3AV35	2.7e-27	97.22	protein PAIR1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483272 PE=4 SV=1	[more]
A0A1S3AVJ5	2.7e-27	97.22	protein PAIR1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483272 PE=4 SV=1	[more]
A0A6J1D1C7	1.5e-25	95.83	protein PAIR1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016374 PE=4 SV=...	[more]
A0A6J1D122	1.5e-25	95.83	protein PAIR1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016374 PE=4 SV=...	[more]

BLAST of Tan0010326.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01690.1	1.2e-11	56.00	putative recombination initiation defects 3	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..54
None	No IPR available	PANTHER	PTHR37695:SF1	RECOMBINATION INITIATION DEFECTS 3-RELATED	coord: 1..72
IPR034546	Protein PAIR1	PANTHER	PTHR37695	RECOMBINATION INITIATION DEFECTS 3-RELATED	coord: 1..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0010326	Tan0010326	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010326.1-exon	Tan0010326.1-exon-LG10:1957124..1957188	exon
Tan0010326.1-exon	Tan0010326.1-exon-LG10:1957725..1957947	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010326.1-cds	Tan0010326.1-cds-LG10:1957124..1957188	CDS
Tan0010326.1-cds	Tan0010326.1-cds-LG10:1957725..1957947	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0010326.1	Tan0010326.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070192	chromosome organization involved in meiotic cell cycle
biological_process	GO:0048236	plant-type sporogenesis
biological_process	GO:0051026	chiasma assembly
biological_process	GO:0009553	embryo sac development
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0009555	pollen development