Tan0010279.1 (mRNA) Snake gourd v1

Overview


Name	Tan0010279.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG02: 6341397 .. 6348382 (-)
Sequence length	729
RNA-Seq Expression	Tan0010279.1
Synteny	Tan0010279.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGTCGGGAGGGGGAAATGGAGCTTCACGGAATCAATGAGACCGAACCGAGGAAGAAGAAGAGGTGAAGATGGAATGGGGACTGGTGGTTGAGTTGGAAGATAAAGTCACAACTCAACTGAAAATTGAAATGCCTAATTTTGAGTGATGGGATACAGTTAGCTATATTTGTATCAATTTAAATCCTAAAATTTCTCATACACTTACTTTTATTTAAGAATTAACGAGAAAATTAGAGGAAGAAAAGAAAGTAAAAAAACCTTCTATTTAATAAAATTTTCTACATCTATTTGGTTCCAACATTTTCTCTAATATATATTATTAGGAAACAAAACGTGCAATTTGAGGCTCAAACACGCCTACTAGAGGTGGGAAAAACTTTACCACTCTGCCAAATCTTAACCTGTTATGATGTATCAATAAATATACATATATGTCAACAAAAGCATAGCTCAATTAGTATCAAGTATCGTGATATGAACCACCAACGCATCAAATTGTTATTTTCTAATTTTTATATAATTCTATTATTTTCTCAATTTTATCCTTTTTATGACATTTTAAATAGGGGTATTTTTGTCATTTGTCATGATATGACATTTAAGGTTTTGGGAAGCTATTTAAAGCTTGGCCATTAGGTTGTACAAGATAGTTTTGTTTGGAATGAAAAGGTATTGATCTACATTTGAGAGCCATGAGCCTCGTCGCTTTGCAATTCTTGATCTAGGGTTGCATGCCTGAACATTCAAGTAACTCTGATCAATTTGCTTGTGGAGTGTTCAAACTTTGAGTAGGGATTTGTTCTCCTTACCTCTTGGTCTTCGATCATCAAGGTAATCCTTATCTAATCTTTCCCTTGGGATTGAGATTGAATTGATTTGGGGGTTTTAGTGTTTGAGAATTAGGGGTTCACATAACCAAAGGGTTCCTAATTCCAATTCGCTAGGGTTTTCTTATCATTTGGTATCAGAGCTTTGGCTCTAGATCGGATATATCTTCTTTTTTTTCTCATCTATATTCTGAATTTTTGTTTCCAAAATTCTTGTCTCGTTTATTTATAAAAAAAAAATTACTTGCAATTTGATCTATGTGCTTTATCTTTCTAAACAAATAATTGTTTATGATTATTCATGCATAATTTTTTGAAGCAATATCGATTGATTCCAAGGCCTAATTTGAATCAAATCGACTTAAGTTTGAAGAAAAAATACTGAGGTCGAAGTAAAATAGAAGAAAAAATCGTTTGTGTTCATACTGTTCAAATCTGGAAAATCTGGAAAATCTGGAAAATCTGATTTGAATAATTTTTACCGAGACCAAAAGATCATATTTTAAGCCCAAATTTTATATACTCGTTCTTTTGTAGATAAAATAAAATCTCAAAAATTGTCGCTGAAAGAACCGGACCGAAAGATACTGAACCGGTCAAGCCAATTCGATTCTACAAAGAACCCAATTTCTTTTCTCGATCGCCTTTTCTTTCTTAGCTTTTTGTTATCTAAAATTCCTTCTTTTAAGCCCAATTTTTGTTCACGTGATTTTGATACATTTAGCTATTAGTGTATTAAATTTCACTCAATTTTAAGAGCTCTAACTATTTTTACCAAATTTACCAATCTACCCCTGTCATAAACCATAGTCCCTATAGTTTTTGACATTGTGATCAAAGAAGGTATTTTTCTTGATTAGGGTTATTTTGTGAATTTGTGCATAAACTCTTGCTTGTTTGCAACGCTTATCTTAATTCCAAACACTTACAAGTAGTTTAGTACTTAAAAAAACTAAAAAAATTATTTAGTTGTTTGTTTTTCTTTGTTCATCTTACATAATTCCTTGAATCTTGAATCTTAAATTCTTGATTCTAGATATCTTGTTTTTGTTATTTCCTTTCTTAGTTTGTTGGATCTTGAATATTAGGTTCTTGATTTCTAGTTTTCATTTTTTTTTATATTCTACTATTCTTTGCTTAAGTTTGACACTTTACAATCATTCTTACTTGGTTTGTTTCTAGCTTGCTTCTCTGATCTTAGTTGCAAAGTTTTGGCTCACACCCTATCTTTGAGAGAGATTACATCTTGTAAGGGAGAGTTTACATTACAGAGAGTAAACACGAGTGAACTTCATATGTTGAGTGAAGCACGTGAGGGAGTGAATTGTGAGGTCCAATTTTCTTTATGCTAACATCTTCTTGCAGTCATGTATGCACAAAGGAGATCTCTAAGGAATGATCATAATGTTGATCGAAATAAGCCTTCAGTGTTCTTTGGGAGTATTTGCAATCCAGAAGAGTACCTTTATTGGGAGGAGGAAATTGATGCCATATTTGATCATCACCACTATAGTGAAAATAAAAAGGTAAAATTTATCATATCTTCATTTGAGGATTATGCCCTAACATGGTGGAACATTTTGGTGTCGAAAAAGAGAAAAAGTGGAGATTATACAATACCCTCATGGAAAGAAATCAAACTTCTAATGAGAAAGCATTTTGTTCCTAAGTCTTTCCACAAATTGCAAACTTTAAGACAAGGGAGCAAAAGCGTGGAAAAAGTATTATGAAGAGATGCTCCTATTAATTGAGGAAATGAACTTGGATGAGGATGAGGAAGCTATCATGGACCGATTCTACCAAGGACTTAATAAGAATATTGCCAAGATGATTGTTGAACGAGAAGAAATTCAACCTTGTGAGGATCTGGAAGAGATGGTGGATATTGTCATCAAAATAGAAAGGCAACTCCAACGGAGATCTTTAAGGTACACTAAATCTCACGACTACCTCCAATGCCAATACATTTGTGACAAAGGTTAGTTTACCTACCATGTATGAGCATTTTGATAAGGTAGAATGTAGAAAAGAGAAGTTTATCAATGTTGTACATATGCATAATAATGATATTTTGCCTAGTAGGTCATTAGATAAAGCAAGAAATCACATGACTGTACTTTTTACTACTATCATTGTGCCACTTGTTGTTTCTCGAGAAGCATATTATGTTGATGGTAGTGGGAGCGAAAGTAGATGATAGTGAGCTTGAAACTCAATTATTTTGTGATAACACCATTAGTACATTCAATCACGAAGTAACATGTGATCCTACTCTTGTATCAATGCTTCCAAGAGAAGTAAGACTTGATGTGTGTGAGTTGGAAAATAAAAGGCATGAGACCGAGGAAAAGGCAATAATAGAAATTTATGAAGAAGAAAAAATGTGAAAACACAAATGAGAGAAAAAGCAAGTGAGTAATGCTCGGTTTAGAGATCAAAATGAGAGAAAAGCCAAGAATGTGCCTTTAAGAACTTGTGCGGACAAGTCTTTCTTGATTTCAAAACAAAACATTTTTGAACTTGATAAAAGAGATTGTTTTCTAACAAGTGAGCTTCAACCAAAGTTTGCCTAGTTTTTCTTTTGAGTTTTTGCAGTTGTTAAAGCATTGAACATGAACCAAAACTCAAAGATTAGTCCAAATTCTTTCTATGGTTGCAAACTATATGTGAATTGGAAGAACCATCATTCTTTCCAAAAGAAATGGAATCCAAGAGACGATGGGTCATTGACATTTCATGCTTATGATGTTGATTTACCAGGGAGACCATTCAAGAGAAACCCAAGAAGAGTCACACCATTTTCTTCTCATGATTTTAAGATTGTTTTACAAGGAATTGATTTGAATTCGAGGACGAATCCTTCAAAAGAAGGAGAGGATGATATGAACCACCAGGGCATCAAATTGTTATTTTCTAATTTTTATATAATTATATTATTTTCTCAATTTTATCCTTTTTATGACATTTTAAGTAGGGGTATTTTTGTCATTTGTCATGATATGACATTTAGGGTTTTGGGAAGCTATTTAAAGCTTGGCCATTAGGTTGTACAAGATAGTTTTGTTTGGAATGAAAATGTATTGATCTACATTTGAGAGCCATGAGCCTCGTCGCTTTGCAATTCTTGATCTAGGGTTGCATGCCTGAACATTCAAGTAACTCAATTTGCTTGTGGAGTGTTCAAACTTTGAGTAGGGATTTGTTCTCCTTACCTCTTGGTCTTCGATCATCAAGGTAATCCTTATCTAATCTTTCCCTTGGGATTGAGATTGAATTGATTTGGGGGTTTTAGTGTTTGAGAATTAGGGGTTCACATAACCAAAGGGTTCCTAATTCCAATTCGCTAGGGTTTTATTATCATATGGTCATGGGTTTGAATCCTCCCACCCCTAATTCTTGATGTACTAAAAAAAACATATATATAATTTAATGTTTTATACTTCAGGGGCCTATAGTAAATACGCCTCTACTTTCGGTTATAAACTACTCTTTATACTAGTTGAGGTATATTAAAAATATAAGTTTATTTAAGAAATTAGGGAATTAAAAACTCTATTTCACGTCACATAGTATTCTGAAAACCATTTTTTGGAATTTTACTTTAAAATTAAAAAAAATTGGAAGTCTATTTAATAAATTAGGTAATTTGAAAATATATTTTATAAAGCATTCAAAAACTTATTTTTGGAATTCTATTTTAGAAATTAAAAAATTAGAAGTCTATTTAAGTGATTAGAAAATTTAAAATTTTATTCAAAAAAATATCCAAAAACCTTTTTTTAGAACTCTAATAAGAAAAGTGATGATTGTGCAAAAGTTAGGAGGCAAAACCACATCTATTGTGGTTCTGGGGGAGATTGCACTTGCAATGTTTATCCTCAATGGTGGCATAATCAAGATTAGTAAATTGCACTTTCACTTCCAATATTTAACTGAATTTTCTTTTTTTTTTTTTTTTTTTTTTTTGCTAAAAGAGTTAAAAAGTTAGCTGGGAGACAAAACAACAACTTATTTTCATTATAAATCTCGAGGTAAAAACATGTTGGTCATGAGATGCAAAATATGCATTTTTTAATTTTTCTTCTTGAATTTTGAGCATAAATGATGTTGATATTTTTGAAGTATTGAGCCAAAATAAGAGTTGGTCATTTTCTACTTATGAAATTTAATTATAGGAGATTGCACTTGCAATGTTTATCCTCAATGGTGGCATAATCAAGATTAGTAAATTGCAGTTTCACTTCCAATATTTAACTGAACATTCTTCTTCTTTTTTTTTTTTTTGCTAAAAGAGTCAAAGATTTAGGTAGGAAACAAAACAACAACTTATTTTCATTATAAATCTCGAGGTAAAAACATGTTGGTCCATGAGATGCAAAATATGTATTTTTTAATTTTTCTTCTTGAATTTTGAGCATAAATGATGTTGATATTTTTGAAGTATTGAGCCAAAATAAGAGTTGGTCATTTTCTACTTATGAAATTTAATTATAGGAAGTTATTTCTTTTTTAAAAAATCATTACTCACAAAGACTTTGAGCCTAATTGATTTTAGGCATTTGCCTCGGGACAAGACTTGGATTTTGCTAATTGGGTCTTTAATTTGTGCTTTTGTCTACAAAATTTTAAGTACCCTAATTGTGCAGCTGGATTTGCCATAATTTAATTCAGGGATCCATGCAATTTTAATTAATCCCTAATTAAATATGGTTTTGCTATCAATGTTGGGTGATGGCGTGACAACTTTGGATTTGCCAAAATTTCTATTCTAACATTCTTTTGAATCTCTTTTTTTACTTGTTCTCCATGTTTAGTTTACATAGAGTTTTTATGATTTTCTTTCAATTTGACCTATAAATGGCTTTCACCGCCACCAATGCAATGATCCAAACAATAGCCTCTACCGCAACAACAGAGGCACAACAGCTGCTGCAAACACTATCGCCTCTGCCGGCGAGACCACAAAAGTTGCTGCAAACGCTATCGCCTCTGTCGCCCAAGCAACAACAGTTGCTTCAAATGTCGTCGCCTCCACTGCAAATGCAATGAGTATTTCTGCAACTGTCACTTCTTCCGCAGCAGCTGATGTGAAAGTTGCTACTTCATTAACGACACTGGCGACGTCATTCGCTGCTGGGGATGCCAACTCTTCTGGTTTTGCGGGTTTGTCCGATGTTGGTCCATGAGATTCAAATATGCCTTTTTTAATATTTCTTCTTGGATTTTAAGCATGAATGACGCTGATGTTTTTGAAGTATCGAGCCAAAATAGCAGTTGATCATTTCCTACTTATGAAATTTAATTATATGAATGTTATTTCTTTTTCACATTATTACTCACAAAGACTTTGGGTCTGATCATTTTGGGCTTTCGTCTTGGGATTGAACTTGAATTTTGCTAATTGGGCCTTTAATTTGGGCTTTTGTGTACCAAATTTTAAGGACATTGATTGTGTATGTGGGTTTGCAATAATTTAATTTAGGGATCCTTGTAATTTTAATTAATCTCCAATTAAATAAGGTTTTGCCATCAATGTTGAGTGATGACGTGGCAATTTTGGATTTGACGAAATTTCTAATTCAACACTTCATTCAGAATCAGTTTTTGCGTAATCTCCATGTTTAGTTTACAGCTGCTGCAAACGCCATCGCCTCTGCCGGCGAGACCATAAAAAATGTTGCAAACGTCATTGCCTCTCCATCCAAGACACAACAACTGCTTCTAACGTCGTTGCCTCCATCGCCAATACGGTGAGTATTGCAGCAACTATCGCTTCTTACGCGACAACTGATTTGAAAGCTGCTGCATCATTCAAGGCACAGACGGCGTCATTCGCTGCTGAGGTGCCAACTCCTCTGGTTTTTGTGGTTAACCCTCTTCTCCCTCTCCTGTGGTTAACCATCCCCTCATTCTCCCCTCCCGTATTTTAATATTGTAACCACGGACCTAACCTTGGGAATAGAGCTCGTGTGATAGATGGAGAAGTTTGTGATTTCCTTTCAATTTGACCTAAAAATGGTTTCCGCTGCTGCCAATGCAGCGACCCAAGCAGCAACCTCTACCGCCCAAGCCACAAAAGCTGCTGCAAACACCATCGTCTCTGTCGACGAGACAACAACAGTTATTGCAAACGCCATTGTCTTTGTCGCCTAG

mRNA sequence

ATGGCGCGTCGGGAGGGGGAAATGGAGCTTCACGGAATCAATGAGACCGAACCGAGGAAGAAGAAGAGCCTCTACCGCAACAACAGAGGCACAACAGCTGCTGCAAACACTATCGCCTCTGCCGGCGAGACCACAAAAGTTGCTGCAAACGCTATCGCCTCTGTCGCCCAAGCAACAACAGTTGCTTCAAATGTCGTCGCCTCCACTGCAAATGCAATGAGTATTTCTGCAACTGTCACTTCTTCCGCAGCAGCTGATGTGAAAGTTGCTACTTCATTAACGACACTGGCGACGTCATTCGCTGCTGGGGATGCCAACTCTTCTGGTTTTGCGGTTTACAGCTGCTGCAAACGCCATCGCCTCTGCCGGCGAGACCATAAAAAATGTTGCAAACGTCATTGCCTCTCCATCCAAGACACAACAACTGCTTCTAACGTCGTTGCCTCCATCGCCAATACGGTGAGTATTGCAGCAACTATCGCTTCTTACGCGACAACTGATTTGAAAGCTGCTGCATCATTCAAGGCACAGACGGCGTCATTCGCTGCTGAGATGGAGAAGTTTGTGATTTCCTTTCAATTTGACCTAAAAATGGTTTCCGCTGCTGCCAATGCAGCGACCCAAGCAGCAACCTCTACCGCCCAAGCCACAAAAGCTGCTGCAAACACCATCGTCTCTGTCGACGAGACAACAACAGTTATTGCAAACGCCATTGTCTTTGTCGCCTAG

Coding sequence (CDS)

ATGGCGCGTCGGGAGGGGGAAATGGAGCTTCACGGAATCAATGAGACCGAACCGAGGAAGAAGAAGAGCCTCTACCGCAACAACAGAGGCACAACAGCTGCTGCAAACACTATCGCCTCTGCCGGCGAGACCACAAAAGTTGCTGCAAACGCTATCGCCTCTGTCGCCCAAGCAACAACAGTTGCTTCAAATGTCGTCGCCTCCACTGCAAATGCAATGAGTATTTCTGCAACTGTCACTTCTTCCGCAGCAGCTGATGTGAAAGTTGCTACTTCATTAACGACACTGGCGACGTCATTCGCTGCTGGGGATGCCAACTCTTCTGGTTTTGCGGTTTACAGCTGCTGCAAACGCCATCGCCTCTGCCGGCGAGACCATAAAAAATGTTGCAAACGTCATTGCCTCTCCATCCAAGACACAACAACTGCTTCTAACGTCGTTGCCTCCATCGCCAATACGGTGAGTATTGCAGCAACTATCGCTTCTTACGCGACAACTGATTTGAAAGCTGCTGCATCATTCAAGGCACAGACGGCGTCATTCGCTGCTGAGATGGAGAAGTTTGTGATTTCCTTTCAATTTGACCTAAAAATGGTTTCCGCTGCTGCCAATGCAGCGACCCAAGCAGCAACCTCTACCGCCCAAGCCACAAAAGCTGCTGCAAACACCATCGTCTCTGTCGACGAGACAACAACAGTTATTGCAAACGCCATTGTCTTTGTCGCCTAG

Protein sequence

MARREGEMELHGINETEPRKKKSLYRNNRGTTAAANTIASAGETTKVAANAIASVAQATTVASNVVASTANAMSISATVTSSAAADVKVATSLTTLATSFAAGDANSSGFAVYSCCKRHRLCRRDHKKCCKRHCLSIQDTTTASNVVASIANTVSIAATIASYATTDLKAAASFKAQTASFAAEMEKFVISFQFDLKMVSAAANAATQAATSTAQATKAAANTIVSVDETTTVIANAIVFVA

Homology

The following BLAST results are available for this feature:

BLAST of Tan0010279.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010279.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010279.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0010279.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0010279	Tan0010279	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010279.1-exon	Tan0010279.1-exon-LG02:6341397..6341573	exon
Tan0010279.1-exon	Tan0010279.1-exon-LG02:6341707..6341924	exon
Tan0010279.1-exon	Tan0010279.1-exon-LG02:6342387..6342652	exon
Tan0010279.1-exon	Tan0010279.1-exon-LG02:6348315..6348382	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010279.1-cds	Tan0010279.1-cds-LG02:6341397..6341573	CDS
Tan0010279.1-cds	Tan0010279.1-cds-LG02:6341707..6341924	CDS
Tan0010279.1-cds	Tan0010279.1-cds-LG02:6342387..6342652	CDS
Tan0010279.1-cds	Tan0010279.1-cds-LG02:6348315..6348382	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0010279.1	Tan0010279.1-protein	polypeptide