Tan0007904.1 (mRNA) Snake gourd v1

Overview


Name	Tan0007904.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 75524388 .. 75525532 (+)
Sequence length	483
RNA-Seq Expression	Tan0007904.1
Synteny	Tan0007904.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAAAGAAATTTGAAGCTGAAGACATGCTAGTTGAGGAGAAAGGACAAAATGGGGATGAGGAGAGCAATAACGAAATTCAAGAGAGTGAGGATGAGGAGACATACTTACCAGAAAGTCAACCTCAAGCCTTGAAAAAGAGGAAAAGAGCAAGCAATGCACAAAGGCAGAGAGATGTGGAGGCTAGAAGAGAAATATTTAGGAAGATGGCTCTGAACTGCGAAAGAGGTTTCTTGAGCGCTGTAGAAGACTTGCATGAGTTTATCACATCAGTAATCAAGGGCAACGGGTGGGAGGAGCTATGTAAGCACCCCAACCCAACTTGTCATGAGCTGGTAGTAGAGTTTTATCCAAGTTTGGGGCAAAAAGCAACTAATGAAATAACAATAAAAGGGAAAACCGTGAGATGTGTTCAACTAAGTATATCAATGAAGTATACAAGCTTAAATCACTATGGGACCCGAAAGGAAATAGAATCATGGAGAACCCCTCGGATGAACAATTGGAGGACGCCCTAGAGTTGATAGCTAGAGAAGGAACTCAAAGGGTAGTAGCTCGACATGGAAATCGACACCTCACAGTAAGAGACATAAGAAACGAACCTGTGATTTGACTGAACTTCATAAGAAACTGATTGTTACCAACAACCCATGAGACAACCATATCTCAAAAGAGGATCATGTTGTTATATGTTATTTATAAAGGATTGGAGTTGAACATAGGGAGAATCATTAACGAAGAACTAAACTCCATAACCAAGAAGAAGTCAGGAGGAATGTTTTTCCCCTCGCTCATCACTCGCTTGTGCACAAGAGTGAATCTCCTTATTGAAGGGCCCCTCACAACCGTGCATCCCCAAGATGCAGCAGGAGTGCGAGCTCTGATGATTTATAATGCAAAAAGGGCCAATTGATTCAATCAAACATGTAGTGAGGATGGACCAAACTTTGCGGCAAAAAATGCAGCTAATATTGCGGCCACAAATGCTGATAGCAATGTCCCAGCAAAGTCGAAGAAGTCTACAAGCATGGAAAAATTGAAGGGTGAGATGGAGATAATGCAGGAAGATAACAGGGCATACTGGGCCTATGTTAAAGAAGGGGATGTAGTGATAGGCAATATGCTCGACAGATTTACCTAA

mRNA sequence

ATGGGTGAAAAGAAATTTGAAGCTGAAGACATGCTAGTTGAGGAGAAAGGACAAAATGGGGATGAGGAGAGCAATAACGAAATTCAAGAGAGTGAGGATGAGGAGACATACTTACCAGAAAGTCAACCTCAAGCCTTGAAAAAGAGGAAAAGAGCAAGCAATGCACAAAGGCAGAGAGATGTGGAGGCTAGAAGAGAAATATTTAGGAAGATGGCTCTGAACTGCGAAAGAGGTTTCTTGAGCGCTGTAGAAGACTTGCATGAGTTTATCACATCAGTAATCAAGGGCAACGGGTGGGAGGAGCTATCTAATATTGCGGCCACAAATGCTGATAGCAATGTCCCAGCAAAGTCGAAGAAGTCTACAAGCATGGAAAAATTGAAGGGTGAGATGGAGATAATGCAGGAAGATAACAGGGCATACTGGGCCTATGTTAAAGAAGGGGATGTAGTGATAGGCAATATGCTCGACAGATTTACCTAA

Coding sequence (CDS)

ATGGGTGAAAAGAAATTTGAAGCTGAAGACATGCTAGTTGAGGAGAAAGGACAAAATGGGGATGAGGAGAGCAATAACGAAATTCAAGAGAGTGAGGATGAGGAGACATACTTACCAGAAAGTCAACCTCAAGCCTTGAAAAAGAGGAAAAGAGCAAGCAATGCACAAAGGCAGAGAGATGTGGAGGCTAGAAGAGAAATATTTAGGAAGATGGCTCTGAACTGCGAAAGAGGTTTCTTGAGCGCTGTAGAAGACTTGCATGAGTTTATCACATCAGTAATCAAGGGCAACGGGTGGGAGGAGCTATCTAATATTGCGGCCACAAATGCTGATAGCAATGTCCCAGCAAAGTCGAAGAAGTCTACAAGCATGGAAAAATTGAAGGGTGAGATGGAGATAATGCAGGAAGATAACAGGGCATACTGGGCCTATGTTAAAGAAGGGGATGTAGTGATAGGCAATATGCTCGACAGATTTACCTAA

Protein sequence

MGEKKFEAEDMLVEEKGQNGDEESNNEIQESEDEETYLPESQPQALKKRKRASNAQRQRDVEARREIFRKMALNCERGFLSAVEDLHEFITSVIKGNGWEELSNIAATNADSNVPAKSKKSTSMEKLKGEMEIMQEDNRAYWAYVKEGDVVIGNMLDRFT

Homology

The following BLAST results are available for this feature:

BLAST of Tan0007904.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007904.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007904.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007904.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0007904	Tan0007904	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0007904.1-exon	Tan0007904.1-exon-LG04:75524388..75524694	exon
Tan0007904.1-exon	Tan0007904.1-exon-LG04:75525357..75525532	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0007904.1-cds	Tan0007904.1-cds-LG04:75524388..75524694	CDS
Tan0007904.1-cds	Tan0007904.1-cds-LG04:75525357..75525532	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0007904.1	Tan0007904.1-protein	polypeptide