Tan0006950.1 (mRNA) Snake gourd v1

Overview


Name	Tan0006950.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S18, chloroplastic
Location	Contig00034: 92215 .. 92520 (+)
Sequence length	306
RNA-Seq Expression	Tan0006950.1
Synteny	Tan0006950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAACGAGAAACAATTTGAAAGAAGCGAGTCGACCACTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

mRNA sequence

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAACGAGAAACAATTTGAAAGAAGCGAGTCGACCACTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

Coding sequence (CDS)

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAACGAGAAACAATTTGAAAGAAGCGAGTCGACCACTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

Protein sequence

MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK

Homology

[Close]

BLAST of Tan0006950.1 vs. ExPASy Swiss-Prot
Match: A0ZZ57 (30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps18 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-44
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTTRT  LRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTTALRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy Swiss-Prot
Match: Q2L928 (30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.5e-44
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFERSESTTRT  LRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERSESTTRTTALRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy Swiss-Prot
Match: B1A957 (30S ribosomal protein S18, chloroplastic OS=Carica papaya OX=3649 GN=rps18 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-43
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFERSESTT+T GLRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERSESTTKTTGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy Swiss-Prot
Match: Q0G9U0 (30S ribosomal protein S18, chloroplastic OS=Daucus carota OX=4039 GN=rps18 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-43
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKR  LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER+ESTTRT GLR RNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERTESTTRTAGLRARNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy Swiss-Prot
Match: Q09WZ5 (30S ribosomal protein S18, chloroplastic OS=Morus indica OX=248361 GN=rps18 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.0e-43
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARIL LLPFLNNEKQFERSEST RT GLR +NK
Sbjct: 61  LITIAIKQARILCLLPFLNNEKQFERSESTPRTTGLRIKNK 101

[Close]

BLAST of Tan0006950.1 vs. NCBI nr
Match: YP_009753896.1 (ribosomal protein S18 [Trichosanthes lobata] >QIT05844.1 ribosomal protein S18 [Trichosanthes lobata])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. NCBI nr
Match: YP_009317408.1 (ribosomal protein S18 [Coccinia grandis] >YP_009525208.1 ribosomal protein S18 [Hodgsonia macrocarpa] >YP_009560857.1 ribosomal protein S18 [Trichosanthes kirilowii] >YP_009751675.1 ribosomal protein S18 [Hodgsonia heteroclita] >YP_009751928.1 ribosomal protein S18 [Cyclanthera pedata] >YP_009752265.1 ribosomal protein S18 [Trichosanthes baviensis] >YP_009752434.1 ribosomal protein S18 [Trichosanthes tricuspidata] >YP_009752518.1 ribosomal protein S18 [Trichosanthes tubiflora] >YP_009752603.1 ribosomal protein S18 [Trichosanthes homophylla] >YP_009753196.1 ribosomal protein S18 [Trichosanthes truncata] >YP_009753642.1 ribosomal protein S18 [Trichosanthes wallichiana] >YP_009753727.1 ribosomal protein S18 [Trichosanthes nervifolia] >YP_009753811.1 ribosomal protein S18 [Trichosanthes pilosa] >QJD26493.1 ribosomal protein S18 [Trichosanthes kirilowii var. japonica] >QJD26667.1 ribosomal protein S18 [Trichosanthes rosthornii] >AOX48766.1 ribosomal protein S18 [Coccinia grandis] >AOX48851.1 ribosomal protein S18 [Coccinia grandis] >AXR94577.1 ribosomal protein S18 [Hodgsonia macrocarpa])

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. NCBI nr
Match: YP_009456168.1 (ribosomal protein S18 [Lagenaria siceraria] >YP_009674413.1 ribosomal protein S18 [Siraitia grosvenorii] >YP_009738223.1 ribosomal protein S18 [Siraitia siamensis] >YP_009751844.1 ribosomal protein S18 [Indofevillea khasiana] >YP_009752097.1 ribosomal protein S18 [Dendrosicyos socotranus] >YP_009752688.1 ribosomal protein S18 [Ampelosycios humblotii] >YP_009752942.1 ribosomal protein S18 [Momordica sessilifolia] >YP_009753111.1 ribosomal protein S18 [Corallocarpus boehmii] >YP_009753280.1 ribosomal protein S18 [Nothoalsomitra suberosa] >YP_010131116.1 ribosomal protein S18 [Benincasa hispida] >QIT04072.1 ribosomal protein S18 [Luffa aegyptiaca] >QKX48495.1 ribosomal protein S18 [Luffa acutangula] >QNM38553.1 ribosomal protein S18 [Lagenaria siceraria var. microcarpa] >AHM88716.1 ribosomal protein S18 [Lagenaria siceraria] >AHM88775.1 ribosomal protein S18 [Lagenaria siceraria])

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. NCBI nr
Match: YP_009751507.1 (ribosomal protein S18 [Thladiantha dubia] >YP_009752857.1 ribosomal protein S18 [Baijiania yunnanensis] >QIT03988.1 ribosomal protein S18 [Thladiantha dubia] >QIT05929.1 ribosomal protein S18 [Baijiania yunnanensis])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFE SESTTRTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFETSESTTRTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. NCBI nr
Match: QJR52978.1 (ribosomal protein S18 [Herpetospermum pedunculosum])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRR+NRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRINRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy TrEMBL
Match: A0A6H0EVZ7 (30S ribosomal protein S18, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy TrEMBL
Match: A0A410HFA4 (30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy TrEMBL
Match: A0A6M3RTS7 (30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy TrEMBL
Match: A0A2Z2CGJ8 (30S ribosomal protein S18, chloroplastic OS=Coccinia grandis OX=387127 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. ExPASy TrEMBL
Match: A0A346QNH8 (30S ribosomal protein S18, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=rps18 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

[Close]

BLAST of Tan0006950.1 vs. TAIR 10
Match: ATCG00650.1 (ribosomal protein S18 )

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-42
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           M+KSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK 102
           LITIAIKQARILSLLPFLNN+KQFERSEST RT  LRTR K
Sbjct: 61  LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101

The following BLAST results are available for this feature:

BLAST of Tan0006950.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0ZZ57	1.9e-44	96.04	30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q2L928	9.5e-44	95.05	30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 ...	[more]
B1A957	1.6e-43	94.06	30S ribosomal protein S18, chloroplastic OS=Carica papaya OX=3649 GN=rps18 PE=3 ...	[more]
Q0G9U0	2.1e-43	94.06	30S ribosomal protein S18, chloroplastic OS=Daucus carota OX=4039 GN=rps18 PE=3 ...	[more]
Q09WZ5	8.0e-43	93.07	30S ribosomal protein S18, chloroplastic OS=Morus indica OX=248361 GN=rps18 PE=3...	[more]

BLAST of Tan0006950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009753896.1	1.2e-43	100.00	ribosomal protein S18 [Trichosanthes lobata] >QIT05844.1 ribosomal protein S18 [...	[more]
YP_009317408.1	4.5e-43	99.01	ribosomal protein S18 [Coccinia grandis] >YP_009525208.1 ribosomal protein S18 [...	[more]
YP_009456168.1	1.0e-42	98.02	ribosomal protein S18 [Lagenaria siceraria] >YP_009674413.1 ribosomal protein S1...	[more]
YP_009751507.1	1.3e-42	98.02	ribosomal protein S18 [Thladiantha dubia] >YP_009752857.1 ribosomal protein S18 ...	[more]
QJR52978.1	1.3e-42	97.03	ribosomal protein S18 [Herpetospermum pedunculosum]	[more]

BLAST of Tan0006950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EVZ7	5.8e-44	100.00	30S ribosomal protein S18, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=r...	[more]
A0A410HFA4	2.2e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A6M3RTS7	2.2e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Trichosanthes kirilowii var. japonic...	[more]
A0A2Z2CGJ8	2.2e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Coccinia grandis OX=387127 GN=rps18 ...	[more]
A0A346QNH8	2.2e-43	99.01	30S ribosomal protein S18, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=r...	[more]

BLAST of Tan0006950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00650.1	2.4e-42	90.10	ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 35..45 score: 60.88 coord: 67..77 score: 71.07 coord: 53..67 score: 54.34 coord: 45..52 score: 65.53
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 22..79 e-value: 2.3E-17 score: 61.0
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 27..75 e-value: 5.0E-19 score: 68.2
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 2..100
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 12..80 score: 19.342112
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 21..84 e-value: 3.0E-28 score: 99.4
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 15..81
None	No IPR available	PANTHER	PTHR13479:SF61	30S RIBOSOMAL PROTEIN S18, CHLOROPLASTIC	coord: 2..100
IPR018275	Ribosomal protein S18, conserved site	PROSITE	PS00057	RIBOSOMAL_S18	coord: 28..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0006950	Tan0006950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006950.1-exon	Tan0006950.1-exon-Contig00034:92215..92520	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006950.1-cds	Tan0006950.1-cds-Contig00034:92215..92520	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0006950.1	Tan0006950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding