Tan0006458.1 (mRNA) Snake gourd v1

Overview
NameTan0006458.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMuDRA-like transposase
LocationLG08: 19024196 .. 19024873 (+)
Sequence length576
RNA-Seq ExpressionTan0006458.1
SyntenyTan0006458.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACAAGTGTATTTTCATTAGATACGGTGGTGTATGGGAGGAGGATACATGTACTTATATCGGAGGCCAGATGACCGGTATCGTTGTGCCAGTAACGATAACATTTGAGAAATTTCGGTCTGAGGTTTATAATGTTACGTCGATCGACGAGCATGCGTATGACATTGAAATGAGGGTGAAATTCAATATAGAATATCCATCACCACCAATGTATATAAGTAACGATCGGGATGTTGTATTTTTTACGAATCATCTGGACGTTGCAAGAGTCCAAGTCTAGATAACAAGTGTACATAAACAATTCGTCGCAAATGGTGCAGAAGATGATGAAGATACAGAGGAGGACTCGGAGTACAACCCTGTGCATGAAGAAGAAAGCGATGAGGTTGTTGAATACAAAGAAGATGAAGAGGAATACGACGACGAAGAGGAATATGAAAATATGGTATACGACGACGAGTACGAGTTAGAGGTATCAGACGAATCAAAAGCCGAAGAAAAAGGTAGAGACGATGGATACGTTCCAAATGATGGGCTTCATTTTGGAAACGTACAGGATACAGACTGGTTTGGGTCGTCTGATATCTTAAATATATCTCAGGTGACACAATGTAACTTAAACCCTACTGTAAATATAATCGAACGATTTATAGGAGGTGACTTACACGAGTAG

mRNA sequence

ATGGACAACAAGTGTATTTTCATTAGATACGGTGGTGTATGGGAGGAGGATACATGTACTTATATCGGAGGCCAGATGACCGGTATCGTTGTGCCAGTAACGATAACATTTGAGAAATTTCGGTCTGAGGTTTATAATGTTACGTCGATCGACGAGCATGCGTATGACATTGAAATGAGGGTGAAATTCAATATAGAATATCCATCACCACCAATGTATATAAAAGATGATGAAGATACAGAGGAGGACTCGGAGTACAACCCTGTGCATGAAGAAGAAAGCGATGAGGTTGTTGAATACAAAGAAGATGAAGAGGAATACGACGACGAAGAGGAATATGAAAATATGGTATACGACGACGAGTACGAGTTAGAGGTATCAGACGAATCAAAAGCCGAAGAAAAAGGTAGAGACGATGGATACGTTCCAAATGATGGGCTTCATTTTGGAAACGTACAGGATACAGACTGGTTTGGGTCGTCTGATATCTTAAATATATCTCAGGTGACACAATGTAACTTAAACCCTACTGTAAATATAATCGAACGATTTATAGGAGGTGACTTACACGAGTAG

Coding sequence (CDS)

ATGGACAACAAGTGTATTTTCATTAGATACGGTGGTGTATGGGAGGAGGATACATGTACTTATATCGGAGGCCAGATGACCGGTATCGTTGTGCCAGTAACGATAACATTTGAGAAATTTCGGTCTGAGGTTTATAATGTTACGTCGATCGACGAGCATGCGTATGACATTGAAATGAGGGTGAAATTCAATATAGAATATCCATCACCACCAATGTATATAAAAGATGATGAAGATACAGAGGAGGACTCGGAGTACAACCCTGTGCATGAAGAAGAAAGCGATGAGGTTGTTGAATACAAAGAAGATGAAGAGGAATACGACGACGAAGAGGAATATGAAAATATGGTATACGACGACGAGTACGAGTTAGAGGTATCAGACGAATCAAAAGCCGAAGAAAAAGGTAGAGACGATGGATACGTTCCAAATGATGGGCTTCATTTTGGAAACGTACAGGATACAGACTGGTTTGGGTCGTCTGATATCTTAAATATATCTCAGGTGACACAATGTAACTTAAACCCTACTGTAAATATAATCGAACGATTTATAGGAGGTGACTTACACGAGTAG

Protein sequence

MDNKCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMRVKFNIEYPSPPMYIKDDEDTEEDSEYNPVHEEESDEVVEYKEDEEEYDDEEEYENMVYDDEYELEVSDESKAEEKGRDDGYVPNDGLHFGNVQDTDWFGSSDILNISQVTQCNLNPTVNIIERFIGGDLHE
Homology
BLAST of Tan0006458.1 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-14
Identity = 32/79 (40.51%), Postives = 60/79 (75.95%), Query Frame = 0

Query: 1   MDNKCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMR 60
           M  KC+  RYG  W+E+   Y+GG++TGIVVP+T+ +++F++ +Y V +++   +D+ MR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VKFNIEYPSPPMYIKDDED 80
           VK+ +++ +PP+YI++D+D
Sbjct: 180 VKYKLDFEAPPLYIQNDDD 198

BLAST of Tan0006458.1 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 30/76 (39.47%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 4  KCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMRVKF 63
          K +FIR+GG WE++T +Y+GG++ GI+VP+T+T+++ ++ ++ +  +D++ YD+ +RV +
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 NIEYPSPPMYIKDDED 80
          ++   SPPM++ DD+D
Sbjct: 65 HLACDSPPMFVTDDDD 80

BLAST of Tan0006458.1 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 8.7e-11
Identity = 29/74 (39.19%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1   MDNKCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMR 60
           M  KC+ I Y G W+E+   Y+GG++ GIVVP+T+ +E+ ++ +Y + +I    +D+ MR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VKFNIEYPSPPMYI 75
           VK+ +++ +PP YI
Sbjct: 293 VKYKLDFEAPPHYI 306

BLAST of Tan0006458.1 vs. NCBI nr
Match: KAA0056639.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-07
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1  MDNKCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMR 60
          M N  I +RYGG W+E    Y GG + GIVV   IT +  + E+YN+T +D   +DI++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61 --VKFNIEYPSPPMYIKDDED 80
             +  +E  +PP  + +D D
Sbjct: 61 CIYEIKVENEAPPFELSNDRD 81

BLAST of Tan0006458.1 vs. NCBI nr
Match: TYK07864.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-06
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMRVKFNI 65
          I +R+GG W+E    Y GG + GIVVP  IT++  +SE+Y++  +D   +DI++R  + I
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 --EYPSPPMYIKDDED 80
            E  +PP  + +D D
Sbjct: 66 KGEKKAPPFELSNDRD 81

BLAST of Tan0006458.1 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.9e-14
Identity = 30/76 (39.47%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 4  KCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMRVKF 63
          K +FIR+GG WE++T +Y+GG++ GI+VP+T+T+++ ++ ++ +  +D++ YD+ +RV +
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 NIEYPSPPMYIKDDED 80
          ++   SPPM++ DD+D
Sbjct: 65 HLACDSPPMFVTDDDD 80

BLAST of Tan0006458.1 vs. ExPASy TrEMBL
Match: A0A5A7UT04 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001610 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1  MDNKCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMR 60
          M N  I +RYGG W+E    Y GG + GIVV   IT +  + E+YN+T +D   +DI++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61 --VKFNIEYPSPPMYIKDDED 80
             +  +E  +PP  + +D D
Sbjct: 61 CIYEIKVENEAPPFELSNDRD 81

BLAST of Tan0006458.1 vs. ExPASy TrEMBL
Match: A0A5D3C9E9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00080 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMRVKFNI 65
          I +R+GG W+E    Y GG + GIVVP  IT++  +SE+Y++  +D   +DI++R  + I
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 --EYPSPPMYIKDDED 80
            E  +PP  + +D D
Sbjct: 66 KGEKKAPPFELSNDRD 81

BLAST of Tan0006458.1 vs. ExPASy TrEMBL
Match: A0A5A7TQS3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00270 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 6  IFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMRVKFNI 65
          I +R+GG W+E+   Y GG + GIVVP  IT +  +SE+Y++  +D   +DI++R  + I
Sbjct: 6  ILVRHGGAWDEERRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 --EYPSPPMYIKDDED 80
            E  +PP  + +D D
Sbjct: 66 KGEKEAPPFELSNDRD 81

BLAST of Tan0006458.1 vs. ExPASy TrEMBL
Match: A0A6J5W2L5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3856 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-06
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1  MDNKCIFIRYGGVWEEDTCTYIGGQMTGIVVPVTITFEKFRSEVYNVTSIDEHAYDIEMR 60
          M    I I YGG W     TY  G+  G++VP  IT E+ R++VY++T++D + Y+I M+
Sbjct: 1  MSRLTILISYGGSWVHS--TYTNGKTKGVLVPEKITLEELRNKVYDITNLDPNKYEITMK 60

Query: 61 VKFNIEYPSPPMYIKDDEDTE 82
          V ++    + P+ I DD+D +
Sbjct: 61 VIYDSTKNAWPVDIVDDDDVK 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038888098.12.9e-1440.51uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_022154925.11.4e-1339.47uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038902319.18.7e-1139.19trichohyalin-like [Benincasa hispida][more]
KAA0056639.19.9e-0738.27MuDRA-like transposase [Cucumis melo var. makuwa][more]
TYK07864.13.8e-0638.16MuDRA-like transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1DL086.9e-1439.47uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7UT044.8e-0738.27MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5D3C9E91.8e-0638.16MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7TQS34.1e-0638.16MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A6J5W2L55.3e-0637.04Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3856 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..112

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0006458Tan0006458gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0006458.1-exonTan0006458.1-exon-LG08:19024196..19024418exon
Tan0006458.1-exonTan0006458.1-exon-LG08:19024521..19024873exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0006458.1-cdsTan0006458.1-cds-LG08:19024196..19024418CDS
Tan0006458.1-cdsTan0006458.1-cds-LG08:19024521..19024873CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0006458.1Tan0006458.1-proteinpolypeptide