Tan0006176.1 (mRNA) Snake gourd v1

Overview


Name	Tan0006176.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S31, chloroplastic
Location	LG03: 64127625 .. 64128188 (+)
Sequence length	366
RNA-Seq Expression	Tan0006176.1
Synteny	Tan0006176.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACTTCCTTTTGGACTTCTTCAGGCCGCATCTCAATCTCCTACTCTTTCTCCTCGTTTCTTCTCTTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTGCTTCTACTGCTTCTCTCGCAGCCTCTGCAACTTCGTCAACTTCTTCAATTCCTGCTGGTATGCATTTGTTAGCTTGTTTTCAAGTGTTTATGTCTCTTCTGTTTGCATTCGATTGATTAATTTTTGTTATGTGTTTGCTTTTTCAGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAATCACTCGTACGGAAATGTAAGTGTCTCTACTCTCTCTTCGTTTTGTTCTCTTGAATTTCCTTTTTTATCTGATGTGAGTCCTCTTTCTTTGTTGATTTTGAATTTTTTTGGGGGAAAATGTTCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGATTCCGAGAGTGACGGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTCTCTAGCTAG

mRNA sequence

ATGGCTTCACTTCCTTTTGGACTTCTTCAGGCCGCATCTCAATCTCCTACTCTTTCTCCTCGTTTCTTCTCTTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTGCTTCTACTGCTTCTCTCGCAGCCTCTGCAACTTCGTCAACTTCTTCAATTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAATCACTCGTACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGATTCCGAGAGTGACGGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTCTCTAGCTAG

Coding sequence (CDS)

ATGGCTTCACTTCCTTTTGGACTTCTTCAGGCCGCATCTCAATCTCCTACTCTTTCTCCTCGTTTCTTCTCTTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTGCTTCTACTGCTTCTCTCGCAGCCTCTGCAACTTCGTCAACTTCTTCAATTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAATCACTCGTACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGATTCCGAGAGTGACGGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTCTCTAGCTAG

Protein sequence

MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS

Homology

[Close]

BLAST of Tan0006176.1 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 24  SFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   + S TSS+SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS 122
           +KGRG  RV  PP+PPRKDKF++DEKIKI+IDESLFS+
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

[Close]

BLAST of Tan0006176.1 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-12
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETL-GTSLRASTASLAASATSSTSSIPAVYCG 60
           MASL  G    A  S +     FSFS S+++ G SL +      +S+ S++ ++P +YCG
Sbjct: 1   MASLLLGTPSMACHSVS-----FSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEK 110
           RGD+KT KGKRFNHS+GNARP++K KGRG      PP  P   K D  +K
Sbjct: 61  RGDRKTAKGKRFNHSFGNARPKNKNKGRG------PPKAPIFPKGDPSQK 99

[Close]

BLAST of Tan0006176.1 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 55  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGIPRVTAPPSPP 100
           AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P S P
Sbjct: 29  AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]

BLAST of Tan0006176.1 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 9.3e-51
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGR 60
           MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLA SATSS SS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRG PRV  PP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of Tan0006176.1 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 202.2 bits (513), Expect = 2.5e-48
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCG 60
           MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA STASLA S TSS SSIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFN SYGNARPR+KTKGRG PRV  PPSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

Query: 121 SS 122
           ++
Sbjct: 121 AN 122

[Close]

BLAST of Tan0006176.1 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SS SSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

Query: 121 SS 122
           +S
Sbjct: 121 AS 122

[Close]

BLAST of Tan0006176.1 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 105/120 (87.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST +   SATSS SSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Tan0006176.1 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45
Identity = 105/120 (87.50%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST     SATSS SSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GISATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Tan0006176.1 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.5e-51
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGR 60
           MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLA SATSS SS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRG PRV  PP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of Tan0006176.1 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.1e-47
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SS SSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

Query: 121 SS 122
           +S
Sbjct: 121 AS 122

[Close]

BLAST of Tan0006176.1 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.1e-47
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLAASATSSTSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SS SSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

Query: 121 SS 122
           +S
Sbjct: 121 AS 122

[Close]

BLAST of Tan0006176.1 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46
Identity = 105/120 (87.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST +   SATSS SSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Tan0006176.1 vs. ExPASy TrEMBL
Match: A0A6J1EV33 (30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438171 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46
Identity = 105/120 (87.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST +   SATSS SSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRG PRV  PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Tan0006176.1 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-29
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 24  SFSKSETLGTSLRASTASLAASATSSTSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   + S TSS+SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGIPRVTAPPSPPRKDKFDDDEKIKIEIDESLFSS 122
           +KGRG  RV  PP+PPRKDKF++DEKIKI+IDESLFS+
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

The following BLAST results are available for this feature:

BLAST of Tan0006176.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	2.3e-28	70.41	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	1.8e-12	45.45	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	2.7e-05	63.04	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Tan0006176.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151467.1	9.3e-51	91.67	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_038882305.1	2.5e-48	90.16	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	1.1e-46	86.89	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_022931892.1	2.0e-45	87.50	30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545...	[more]
XP_023517799.1	2.6e-45	87.50	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0006176.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDL3	4.5e-51	91.67	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7TU27	5.1e-47	86.89	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	5.1e-47	86.89	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]
A0A6J1HRX4	9.7e-46	87.50	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1EV33	9.7e-46	87.50	30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Tan0006176.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	1.6e-29	70.41	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 20..102 e-value: 3.5E-31 score: 107.3
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 59..83 e-value: 1.5E-10 score: 38.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..120
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0006176	Tan0006176	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006176.1-exon	Tan0006176.1-exon-LG03:64127625..64127790	exon
Tan0006176.1-exon	Tan0006176.1-exon-LG03:64127880..64127944	exon
Tan0006176.1-exon	Tan0006176.1-exon-LG03:64128054..64128188	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006176.1-cds	Tan0006176.1-cds-LG03:64127625..64127790	CDS
Tan0006176.1-cds	Tan0006176.1-cds-LG03:64127880..64127944	CDS
Tan0006176.1-cds	Tan0006176.1-cds-LG03:64128054..64128188	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0006176.1	Tan0006176.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding