Tan0005935.1 (mRNA) Snake gourd v1

Overview


Name	Tan0005935.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 110918480 .. 110918968 (-)
Sequence length	489
RNA-Seq Expression	Tan0005935.1
Synteny	Tan0005935.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGGGAGATTTAGAGGGAGAACTGAATCAAAGTCCTATCTCGACCCCTTCGGTTCAGGCGAGTGGAGGTGGAACGCCAATGGCTGAAAAGAAAGGACAAGACGCGACCGACGACAAGGATTCAGGGAAGTTTTCTGATGATTTCCAAATATTTTTAAATGCAATTAATTTTTCAGCTACAACGGCTACAAAAGACGAAACACCAGCGGGAATCAAGGAGCATTCAAAGGCTCCCAGAAAAATTAAAAACACAACGATTATGGAGGTTTCAAAATCGCTGGGATTTGATGGGGTAGATTTAGGAAACAAAGGAGAAAAATCAGGGGAGTCAGCTGGTGTGAAGACGAAGAGCATGGGCCCCACAGAACTAAACCTTGAAGACAATGTGCTGATTCACGGACAACAACCAAACACTCATTTTGGGCTTTCAGAATTGATGGGTCTGTCTTTTACCGTGGGTTGTGAGACAAATATGAAGAAGTAG

mRNA sequence

ATGGAGGGGGGAGATTTAGAGGGAGAACTGAATCAAAGTCCTATCTCGACCCCTTCGGTTCAGGCGAGTGGAGGTGGAACGCCAATGGCTGAAAAGAAAGGACAAGACGCGACCGACGACAAGGATTCAGGGAAGTTTTCTGATGATTTCCAAATATTTTTAAATGCAATTAATTTTTCAGCTACAACGGCTACAAAAGACGAAACACCAGCGGGAATCAAGGAGCATTCAAAGGCTCCCAGAAAAATTAAAAACACAACGATTATGGAGGTTTCAAAATCGCTGGGATTTGATGGGGTAGATTTAGGAAACAAAGGAGAAAAATCAGGGGAGTCAGCTGGTGTGAAGACGAAGAGCATGGGCCCCACAGAACTAAACCTTGAAGACAATGTGCTGATTCACGGACAACAACCAAACACTCATTTTGGGCTTTCAGAATTGATGGGTCTGTCTTTTACCGTGGGTTGTGAGACAAATATGAAGAAGTAG

Coding sequence (CDS)

ATGGAGGGGGGAGATTTAGAGGGAGAACTGAATCAAAGTCCTATCTCGACCCCTTCGGTTCAGGCGAGTGGAGGTGGAACGCCAATGGCTGAAAAGAAAGGACAAGACGCGACCGACGACAAGGATTCAGGGAAGTTTTCTGATGATTTCCAAATATTTTTAAATGCAATTAATTTTTCAGCTACAACGGCTACAAAAGACGAAACACCAGCGGGAATCAAGGAGCATTCAAAGGCTCCCAGAAAAATTAAAAACACAACGATTATGGAGGTTTCAAAATCGCTGGGATTTGATGGGGTAGATTTAGGAAACAAAGGAGAAAAATCAGGGGAGTCAGCTGGTGTGAAGACGAAGAGCATGGGCCCCACAGAACTAAACCTTGAAGACAATGTGCTGATTCACGGACAACAACCAAACACTCATTTTGGGCTTTCAGAATTGATGGGTCTGTCTTTTACCGTGGGTTGTGAGACAAATATGAAGAAGTAG

Protein sequence

MEGGDLEGELNQSPISTPSVQASGGGTPMAEKKGQDATDDKDSGKFSDDFQIFLNAINFSATTATKDETPAGIKEHSKAPRKIKNTTIMEVSKSLGFDGVDLGNKGEKSGESAGVKTKSMGPTELNLEDNVLIHGQQPNTHFGLSELMGLSFTVGCETNMKK

Homology

The following BLAST results are available for this feature:

BLAST of Tan0005935.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005935.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005935.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005935.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0005935	Tan0005935	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0005935.1-cds	Tan0005935.1-cds-LG01:110918480..110918968	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0005935.1-exon	Tan0005935.1-exon-LG01:110918480..110918968	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0005935.1	Tan0005935.1-protein	polypeptide