Tan0004718.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCACTTCTGCAACAATTCCTTTAATCTTTCTCTCTTTAATGGCGGTTTAAACCCCTATTTCTTCTTCTTCTTCTTCTTCTTCTCTCTATTTCTATTCTTTCTTCTTCCATGGAAATTTACACCGACAACAGAAGGCGAGTTCGCGACGAGTTCGACGACTCGCTTGTCGATTCGGCCGAGTCGAAGCTCAGACGACTCAACTCAGCGGAATCGAGATTCGTGAAGCCATGCACCAAGGGGAACTGGAATGTTGTTAACTCGTCGAAGTCGGAGCAGGTAGGATCCGACGGAGATGATTTGAGAATCGATTTGGCGGAGTCGGAGGAGATTCAAGATGAGTTGCTTAACATCCTCGAAGATGGCGACGCCGTAACGGAGCGAGATGAGAGTATTCAAGGTCTCGAACTCGATTCGTTCATCCGAAGCTTCGAGGAGGAGATTCAAGCTCTACCGCCGGCGAAAACGACGTCGGATCGGAATGAGACTCCTCAGGCGGAACTTGGATATCTTTTCGAGGCGTCGGATGATGAACTCGGGCTGCCGCCGACGGGAGGTTCGAGTACTGAAGGGAAGATGGAGGCGATTGATTTTATGCCGGCTTGTTCTTCGGCTGGTGTGTTCGAGTTGGATGGGAACTTAGGGTTTGAGGATGAGATACCGTGTTATGACTCGTTCGAAATCGGAATCGGCATTGGTTCCGGCGCGGCGGAGGAGAATTGTTTGGGCGGAGAGTTTGTTGCATTGGGCGGTTTGTTTGATTATTCAGACGTGCCGTTTCGGCCGGAGTCGTTATCGGCTCTGTAGAAACGGGTTTCCAATGGGGGAAGGTTGGTTTTTGGTTTTTAGGGTTGGTGTGGAACCGACGTCGTTTTAAGTCTGTAGGTTGTAAATCTGAAAGGACAAAAACACAACTCTTTGAATAGCAATGCAGAATTTCCAAAAAAAAAAAAGGAAATGTAGAGGAGTTTTTTTTTAATTTTGTTTTTTTTAATAGAACGATTCTTAATTTTTACCGTTGTAAAAACCCTGTGTATCCGTCGGTTTCTCTCTTTTGTCGTTTCTCTGATTTTGTTATTTTATTATTGACTGGAGAGGGGTAGTTTTGGAAAATTAGGAGATAAAAAAAAGGTTGAATCAGTTTCGAGTTGAAAATAGGTGGGGATTGATGGAGTGTCGCTGTGTGTGGGCACCTTTGAGTAAGAGATGATATTTTTTCTTTTCTTTTTCTTTTTTGAACCACGCAGGTTTTAATGACTACTTTTTAGTTTTTAAGAGACGTTTAATTCATGAATTTGAAAAGTTTTAGGTTTGTCGTAATTAATTTTTTTAAAAGAAAATATTGGGTAGAAAATTTATTTTAAATTTAGATTTACGTGACTCGTGGAACTTTTTAAATGGTGCGTCAAGTTTTTAATTCATATAAAATTCCAACTTACAATTAAAAAAAAATGTAAAATTGTTGAGC CTCACTTCTGCAACAATTCCTTTAATCTTTCTCTCTTTAATGGCGGTTTAAACCCCTATTTCTTCTTCTTCTTCTTCTTCTTCTCTCTATTTCTATTCTTTCTTCTTCCATGGAAATTTACACCGACAACAGAAGGCGAGTTCGCGACGAGTTCGACGACTCGCTTGTCGATTCGGCCGAGTCGAAGCTCAGACGACTCAACTCAGCGGAATCGAGATTCGTGAAGCCATGCACCAAGGGGAACTGGAATGTTGTTAACTCGTCGAAGTCGGAGCAGGTAGGATCCGACGGAGATGATTTGAGAATCGATTTGGCGGAGTCGGAGGAGATTCAAGATGAGTTGCTTAACATCCTCGAAGATGGCGACGCCGTAACGGAGCGAGATGAGAGTATTCAAGGTCTCGAACTCGATTCGTTCATCCGAAGCTTCGAGGAGGAGATTCAAGCTCTACCGCCGGCGAAAACGACGTCGGATCGGAATGAGACTCCTCAGGCGGAACTTGGATATCTTTTCGAGGCGTCGGATGATGAACTCGGGCTGCCGCCGACGGGAGGTTCGAGTACTGAAGGGAAGATGGAGGCGATTGATTTTATGCCGGCTTGTTCTTCGGCTGGTGTGTTCGAGTTGGATGGGAACTTAGGGTTTGAGGATGAGATACCGTGTTATGACTCGTTCGAAATCGGAATCGGCATTGGTTCCGGCGCGGCGGAGGAGAATTGTTTGGGCGGAGAGTTTGTTGCATTGGGCGGTTTGTTTGATTATTCAGACGTGCCGTTTCGGCCGGAGTCGTTATCGGCTCTGTAGAAACGGGTTTCCAATGGGGGAAGGTTGGTTTTTGGTTTTTAGGGTTGGTGTGGAACCGACGTCGTTTTAAGTCTGTAGGTTGTAAATCTGAAAGGACAAAAACACAACTCTTTGAATAGCAATGCAGAATTTCCAAAAAAAAAAAAGGAAATGTAGAGGAGTTTTTTTTTAATTTTGTTTTTTTTAATAGAACGATTCTTAATTTTTACCGTTGTAAAAACCCTGTGTATCCGTCGGTTTCTCTCTTTTGTCGTTTCTCTGATTTTGTTATTTTATTATTGACTGGAGAGGGGTAGTTTTGGAAAATTAGGAGATAAAAAAAAGGTTGAATCAGTTTCGAGTTGAAAATAGGTGGGGATTGATGGAGTGTCGCTGTGTGTGGGCACCTTTGAGTAAGAGATGATATTTTTTCTTTTCTTTTTCTTTTTTGAACCACGCAGGTTTTAATGACTACTTTTTAGTTTTTAAGAGACGTTTAATTCATGAATTTGAAAAGTTTTAGGTTTGTCGTAATTAATTTTTTTAAAAGAAAATATTGGGTAGAAAATTTATTTTAAATTTAGATTTACGTGACTCGTGGAACTTTTTAAATGGTGCGTCAAGTTTTTAATTCATATAAAATTCCAACTTACAATTAAAAAAAAATGTAAAATTGTTGAGC ATGGAAATTTACACCGACAACAGAAGGCGAGTTCGCGACGAGTTCGACGACTCGCTTGTCGATTCGGCCGAGTCGAAGCTCAGACGACTCAACTCAGCGGAATCGAGATTCGTGAAGCCATGCACCAAGGGGAACTGGAATGTTGTTAACTCGTCGAAGTCGGAGCAGGTAGGATCCGACGGAGATGATTTGAGAATCGATTTGGCGGAGTCGGAGGAGATTCAAGATGAGTTGCTTAACATCCTCGAAGATGGCGACGCCGTAACGGAGCGAGATGAGAGTATTCAAGGTCTCGAACTCGATTCGTTCATCCGAAGCTTCGAGGAGGAGATTCAAGCTCTACCGCCGGCGAAAACGACGTCGGATCGGAATGAGACTCCTCAGGCGGAACTTGGATATCTTTTCGAGGCGTCGGATGATGAACTCGGGCTGCCGCCGACGGGAGGTTCGAGTACTGAAGGGAAGATGGAGGCGATTGATTTTATGCCGGCTTGTTCTTCGGCTGGTGTGTTCGAGTTGGATGGGAACTTAGGGTTTGAGGATGAGATACCGTGTTATGACTCGTTCGAAATCGGAATCGGCATTGGTTCCGGCGCGGCGGAGGAGAATTGTTTGGGCGGAGAGTTTGTTGCATTGGGCGGTTTGTTTGATTATTCAGACGTGCCGTTTCGGCCGGAGTCGTTATCGGCTCTGTAG MEIYTDNRRRVRDEFDDSLVDSAESKLRRLNSAESRFVKPCTKGNWNVVNSSKSEQVGSDGDDLRIDLAESEEIQDELLNILEDGDAVTERDESIQGLELDSFIRSFEEEIQALPPAKTTSDRNETPQAELGYLFEASDDELGLPPTGGSSTEGKMEAIDFMPACSSAGVFELDGNLGFEDEIPCYDSFEIGIGIGSGAAEENCLGGEFVALGGLFDYSDVPFRPESLSAL Homology
BLAST of Tan0004718.1 vs. NCBI nr
Match: XP_022954576.1 (uncharacterized protein LOC111456805 [Cucurbita moschata]) HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96 Identity = 191/231 (82.68%), Postives = 202/231 (87.45%), Query Frame = 0
BLAST of Tan0004718.1 vs. NCBI nr
Match: XP_023541956.1 (uncharacterized protein LOC111801944 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 361.3 bits (926), Expect = 6.2e-96 Identity = 190/231 (82.25%), Postives = 200/231 (86.58%), Query Frame = 0
BLAST of Tan0004718.1 vs. NCBI nr
Match: KAG6572935.1 (hypothetical protein SDJN03_26822, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 359.4 bits (921), Expect = 2.4e-95 Identity = 190/231 (82.25%), Postives = 201/231 (87.01%), Query Frame = 0
BLAST of Tan0004718.1 vs. NCBI nr
Match: XP_022994085.1 (uncharacterized protein LOC111489916 [Cucurbita maxima]) HSP 1 Score: 356.7 bits (914), Expect = 1.5e-94 Identity = 187/231 (80.95%), Postives = 199/231 (86.15%), Query Frame = 0
BLAST of Tan0004718.1 vs. NCBI nr
Match: KAG6584364.1 (hypothetical protein SDJN03_20296, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 324.7 bits (831), Expect = 6.4e-85 Identity = 174/233 (74.68%), Postives = 191/233 (81.97%), Query Frame = 0
BLAST of Tan0004718.1 vs. ExPASy TrEMBL
Match: A0A6J1GR95 (uncharacterized protein LOC111456805 OS=Cucurbita moschata OX=3662 GN=LOC111456805 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 7.9e-97 Identity = 191/231 (82.68%), Postives = 202/231 (87.45%), Query Frame = 0
BLAST of Tan0004718.1 vs. ExPASy TrEMBL
Match: A0A6J1K097 (uncharacterized protein LOC111489916 OS=Cucurbita maxima OX=3661 GN=LOC111489916 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 7.4e-95 Identity = 187/231 (80.95%), Postives = 199/231 (86.15%), Query Frame = 0
BLAST of Tan0004718.1 vs. ExPASy TrEMBL
Match: A0A6J1E811 (uncharacterized protein LOC111431577 OS=Cucurbita moschata OX=3662 GN=LOC111431577 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 3.4e-84 Identity = 172/233 (73.82%), Postives = 190/233 (81.55%), Query Frame = 0
BLAST of Tan0004718.1 vs. ExPASy TrEMBL
Match: A0A0A0LQD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042270 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 1.3e-70 Identity = 167/244 (68.44%), Postives = 192/244 (78.69%), Query Frame = 0
BLAST of Tan0004718.1 vs. ExPASy TrEMBL
Match: A0A5E4F0J5 (PREDICTED: AT1G13360 OS=Prunus dulcis OX=3755 GN=ALMOND_2B007874 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 8.9e-40 Identity = 124/246 (50.41%), Postives = 149/246 (60.57%), Query Frame = 0
BLAST of Tan0004718.1 vs. TAIR 10
Match: AT1G13360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 2.6e-15 Identity = 70/200 (35.00%), Postives = 108/200 (54.00%), Query Frame = 0
BLAST of Tan0004718.1 vs. TAIR 10
Match: AT1G13360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). ) HSP 1 Score: 72.8 bits (177), Expect = 4.1e-13 Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = 0
BLAST of Tan0004718.1 vs. TAIR 10
Match: AT1G13360.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). ) HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12 Identity = 61/177 (34.46%), Postives = 97/177 (54.80%), Query Frame = 0
BLAST of Tan0004718.1 vs. TAIR 10
Match: AT3G25870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13360.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 8.3e-06 Identity = 57/191 (29.84%), Postives = 89/191 (46.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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