Tan0004124.1 (mRNA) Snake gourd v1

Overview
NameTan0004124.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDBD_Tnp_Mut domain-containing protein
LocationLG11: 39577087 .. 39577554 (-)
Sequence length468
RNA-Seq ExpressionTan0004124.1
SyntenyTan0004124.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAAGATGTATTTTTCTTAGATACAGTGGCGTATGGCAGGAGGATACGTGTACTTATACTGGAGGCCAGATGACCGGTATCGTTTTCCCAATAACAATAACGTTCGAGGAATTCCTGTCGGAGGTTTATAATGTTACGTCAATCGACGAGTATGAGTATGACATTGAAATGAGGGTGAGATTCAATACGAACTACCCATCACTGTCGATGTACATATGTAAGGATCGAGATGTTGTATTTTTTATGAATCATCCAGATATTGCAAGAGTCCGAGTATGGATAACAACTACACAGAAAAAGTGCACAATAGACGACGACGATTCAGATCAGGACCCAGAGTACAACCTTGAGACTGAAAGAGACAGCGATGAGGTTGTTGAATACGAAGAAGATGATGAAGAAGATGAATACGATGAGAAGGAAGAATATGAAGGGATGGGAGACTGTGGCGACTATGGGTAA

mRNA sequence

ATGGACAAAAGATGTATTTTTCTTAGATACAGTGGCGTATGGCAGGAGGATACGTGTACTTATACTGGAGGCCAGATGACCGGTATCGTTTTCCCAATAACAATAACGTTCGAGGAATTCCTGTCGGAGGTTTATAATGTTACGTCAATCGACGAGTATGAGTATGACATTGAAATGAGGGTGAGATTCAATACGAACTACCCATCACTGTCGATGTACATATGTAAGGATCGAGATGTTGTATTTTTTATGAATCATCCAGATATTGCAAGAGTCCGAGTATGGATAACAACTACACAGAAAAAGTGCACAATAGACGACGACGATTCAGATCAGGACCCAGAGTACAACCTTGAGACTGAAAGAGACAGCGATGAGGTTGTTGAATACGAAGAAGATGATGAAGAAGATGAATACGATGAGAAGGAAGAATATGAAGGGATGGGAGACTGTGGCGACTATGGGTAA

Coding sequence (CDS)

ATGGACAAAAGATGTATTTTTCTTAGATACAGTGGCGTATGGCAGGAGGATACGTGTACTTATACTGGAGGCCAGATGACCGGTATCGTTTTCCCAATAACAATAACGTTCGAGGAATTCCTGTCGGAGGTTTATAATGTTACGTCAATCGACGAGTATGAGTATGACATTGAAATGAGGGTGAGATTCAATACGAACTACCCATCACTGTCGATGTACATATGTAAGGATCGAGATGTTGTATTTTTTATGAATCATCCAGATATTGCAAGAGTCCGAGTATGGATAACAACTACACAGAAAAAGTGCACAATAGACGACGACGATTCAGATCAGGACCCAGAGTACAACCTTGAGACTGAAAGAGACAGCGATGAGGTTGTTGAATACGAAGAAGATGATGAAGAAGATGAATACGATGAGAAGGAAGAATATGAAGGGATGGGAGACTGTGGCGACTATGGGTAA

Protein sequence

MDKRCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMRVRFNTNYPSLSMYICKDRDVVFFMNHPDIARVRVWITTTQKKCTIDDDDSDQDPEYNLETERDSDEVVEYEEDDEEDEYDEKEEYEGMGDCGDYG
Homology
BLAST of Tan0004124.1 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 6.8e-14
Identity = 35/97 (36.08%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 1   MDKRCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMR 60
           M ++C+  RY   W E+   Y GG++TGIV PIT+ ++EF + +Y V +++  E+D+ MR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VRFNTNYPSLSMYICKDRDVVFFMNHPDIARVRVWIT 98
           V++  ++ +  +YI  D DV  F+   D++RV++++T
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVT 216

BLAST of Tan0004124.1 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-09
Identity = 32/117 (27.35%), Postives = 74/117 (63.25%), Query Frame = 0

Query: 4   RCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMRVRF 63
           + +F+R+ G W+++T +Y GG++ GI+ P+T+T++E  + ++ +  +D+  YD+ +RV +
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64  NTNYPSLSMYICKDRDVVFFMNHPDIARVRVWITTTQKKCTIDDDDS--DQDPEYNL 119
           +    S  M++  D D+ F +    +++V ++++T  ++ +ID   S  +QD E ++
Sbjct: 65  HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRE-SIDIQSSRLNQDGEQSI 120

BLAST of Tan0004124.1 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-07
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 1   MDKRCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMR 60
           M ++C+ + Y G W E+   Y GG++ GIV PIT+ +EE  + +Y + +I   E+D+ MR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VRFNTNYPSLSMYI 75
           V++  ++ +   YI
Sbjct: 293 VKYKLDFEAPPHYI 306

BLAST of Tan0004124.1 vs. NCBI nr
Match: CAB4294097.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 31/102 (30.39%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 1   MDKRCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMR 60
           M +  I + Y G W     TYT G+  G++ P  IT EE  ++VY++T++D  +Y+I M+
Sbjct: 1   MSRLTILISYGGSWVHS--TYTNGKTKGVLVPEKITLEELRNKVYDITNLDPNKYEITMK 60

Query: 61  VRFNTNYPSLSMYICKDRDVVFFMNHPDIARVRVWITTTQKK 103
           V +++   +  + I  D DV FF+    ++  ++ +  T K+
Sbjct: 61  VIYDSTKNAWPVDIVDDDDVKFFITESILSSYKIPLCITLKQ 100

BLAST of Tan0004124.1 vs. NCBI nr
Match: XP_038701909.1 (uncharacterized protein LOC119998646 [Tripterygium wilfordii])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-05
Identity = 36/122 (29.51%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 1   MDKRCIFLRYSGVWQED--TCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIE 60
           M++  I +RY G W++   +  Y GG+  G++ P  I++ + L  VY +T+ID   ++I+
Sbjct: 1   MEEVSILVRYCGSWEKVGLSYAYKGGKSKGMIIPNDISYNQLLDMVYELTNIDRRTHNIQ 60

Query: 61  MRVRFNTNYPSLSMYICKDRDVVFFM---NHPDIARVRVWITTTQKKCTIDDDDSDQDPE 118
           ++  FN + P+  + I  DRDV FF+   +  +I    + I+ T ++   DD + +   E
Sbjct: 61  LKYIFNVHGPTEPVEIEGDRDVHFFVRCNSDKNIPGTSLCISNTDREVYDDDTEENFSSE 120

BLAST of Tan0004124.1 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 32/117 (27.35%), Postives = 74/117 (63.25%), Query Frame = 0

Query: 4   RCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMRVRF 63
           + +F+R+ G W+++T +Y GG++ GI+ P+T+T++E  + ++ +  +D+  YD+ +RV +
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64  NTNYPSLSMYICKDRDVVFFMNHPDIARVRVWITTTQKKCTIDDDDS--DQDPEYNL 119
           +    S  M++  D D+ F +    +++V ++++T  ++ +ID   S  +QD E ++
Sbjct: 65  HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRE-SIDIQSSRLNQDGEQSI 120

BLAST of Tan0004124.1 vs. ExPASy TrEMBL
Match: A0A6J5W2L5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3856 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 31/102 (30.39%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 1   MDKRCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMR 60
           M +  I + Y G W     TYT G+  G++ P  IT EE  ++VY++T++D  +Y+I M+
Sbjct: 1   MSRLTILISYGGSWVHS--TYTNGKTKGVLVPEKITLEELRNKVYDITNLDPNKYEITMK 60

Query: 61  VRFNTNYPSLSMYICKDRDVVFFMNHPDIARVRVWITTTQKK 103
           V +++   +  + I  D DV FF+    ++  ++ +  T K+
Sbjct: 61  VIYDSTKNAWPVDIVDDDDVKFFITESILSSYKIPLCITLKQ 100

BLAST of Tan0004124.1 vs. ExPASy TrEMBL
Match: A0A2P6QB68 (Putative TIR domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0035231 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 26/84 (30.95%), Postives = 45/84 (53.57%), Query Frame = 0

Query: 1   MDKRCIFLRYSGVWQEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMR 60
           M++  + + Y G W     TY GGQ  GIV    I ++  +  VY V  +D +EY + ++
Sbjct: 284 MNEVRVLVNYDGEWVNS--TYVGGQTKGIVISEDIAYQGLVERVYGVVGVDPHEYKLILK 343

Query: 61  VRFNTNYPSLSMYICKDRDVVFFM 85
            R+ + +P+  + I  D D+ FF+
Sbjct: 344 TRYESKFPTQPVEIINDDDLAFFI 365

BLAST of Tan0004124.1 vs. ExPASy TrEMBL
Match: A0A067F0P3 (DBD_Tnp_Mut domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0409893mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 32/103 (31.07%), Postives = 50/103 (48.54%), Query Frame = 0

Query: 6   IFLRYSGVW---QEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMRVR 65
           + + Y G W         Y+GGQ  GI+    IT++E +  +Y +  +D  EY I M+  
Sbjct: 26  VLVMYDGKWFCSPSGYYLYSGGQTKGIIVSDDITYKELVDRLYGIVKVDTNEYVITMKSL 85

Query: 66  FNTNYPSLSMYICKDRDVVFFMN----HPDIARVRVWITTTQK 102
           +  N P++ + I  D DV FF+     HP   R  + IT  +K
Sbjct: 86  YKANIPTMPVEIVDDDDVRFFIQENAAHPTELRSPICITIERK 128

BLAST of Tan0004124.1 vs. ExPASy TrEMBL
Match: V4VDG2 (DBD_Tnp_Mut domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10031984mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 32/103 (31.07%), Postives = 49/103 (47.57%), Query Frame = 0

Query: 6   IFLRYSGVW---QEDTCTYTGGQMTGIVFPITITFEEFLSEVYNVTSIDEYEYDIEMRVR 65
           + + Y G W         Y+GGQ  GI+    IT++E +  +Y +  +D  EY I M+  
Sbjct: 6   VLVMYDGKWFCSPSGYYLYSGGQTKGIIVSDDITYKELVDRLYGIVKVDTNEYVITMKSL 65

Query: 66  FNTNYPSLSMYICKDRDVVFFMN----HPDIARVRVWITTTQK 102
           +  N P++ + I  D DV FF+     HP   R  + IT   K
Sbjct: 66  YKANIPTMPVEIVDDDDVRFFIQENAAHPTELRSPICITIEHK 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038888098.16.8e-1436.08uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_022154925.13.0e-0927.35uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038902319.12.8e-0735.14trichohyalin-like [Benincasa hispida][more]
CAB4294097.13.1e-0630.39unnamed protein product [Prunus armeniaca][more]
XP_038701909.11.5e-0529.51uncharacterized protein LOC119998646 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
A0A6J1DL081.4e-0927.35uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J5W2L51.5e-0630.39Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3856 PE=4... [more]
A0A2P6QB683.6e-0530.95Putative TIR domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Ch... [more]
A0A067F0P33.6e-0531.07DBD_Tnp_Mut domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=C... [more]
V4VDG24.8e-0531.07DBD_Tnp_Mut domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..147

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0004124Tan0004124gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0004124.1-exonTan0004124.1-exon-LG11:39577087..39577554exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0004124.1-cdsTan0004124.1-cds-LG11:39577087..39577554CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0004124.1Tan0004124.1-proteinpolypeptide