Tan0003478.1 (mRNA) Snake gourd v1

Overview


Name	Tan0003478.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 5273225 .. 5274079 (+)
Sequence length	489
RNA-Seq Expression	Tan0003478.1
Synteny	Tan0003478.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTAGTTCCAGTCTCACAGCTACTGATTAACTTCCTTCACCAGCTTCTAATTGAGAAATTACCCATCTCAGGTCACACCTATGATACATTGAATCGCGGGATTGCGAAAGAATCTCACGCTAGAGTTAATCTATCGTTGCTTAGCTTCCTCGGGATGCGTTCCACCGGACCACACTCGTCGACCTCCGATCGAGCTACGAGCACGAGTAGGTAGGCAGCTAGGGGGGAGGGGCGGTTGGGTTGCCTTTTCAATCAATCTCCGACCGCCCCCTAATTACTAGACCAACCTGGTGCGAGCAACCCGATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTTCGTAAAGTAGAGATTCAAAAGCAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAGCAATGAAGGCAATAATAAATACAAAAGTTGCGGTCAAAAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACACTTTTTGGTAGTACCGGTGAACCAGATGGTTGCGGTGATGGAATCTGGAACGGAGGACTCGTAATATCTCTCTAGATCTGGCAAAAGCGAAAAACCTCCTAACGTATTTCGAATGGGGCGGACTGACCGCCACCCGCGTGGGTTGCGAGTTGGAGTCGTAATAGCTTATGGCTAGAGCCATGATGGGCCCCAAGAGAGAGAATGCGATAAGGATAACGAGTCGCGGCTCGCCAAGTGGGCGCGGGAGGCTGCGGGCAAGTGCTTGGTAGGCCAACGACCTAGTGAACAGGCGAGACACTCGATGAAAGAAGGCACACCGAGCAAAGTACGAGAAATTGGCCCTGCTCCGCTTTATTAA

mRNA sequence

ATGTCACTAGTTCCAGTCTCACAGCTACTGATTAACTTCCTTCACCAGCTTCTAATTGAGAAATTACCCATCTCAGGTCACACCTATGATACATTGAATCGCGGGATTGCGAAAGAATCTCACGCTAGAGTTAATCTATCGTTGCTTAGCTTCCTCGGGATGCGTTCCACCGGACCACACTCGTCGACCTCCGATCGAGCTACGAGCACGAGTAGAGATTCAAAAGCAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAGCAATGAAGGCAATAATAAATACAAAAGTTGCGGTCAAAAAGAGCCATGATGGGCCCCAAGAGAGAGAATGCGATAAGGATAACGAGTCGCGGCTCGCCAAGTGGGCGCGGGAGGCTGCGGGCAAGTGCTTGGTAGGCCAACGACCTAGTGAACAGGCGAGACACTCGATGAAAGAAGGCACACCGAGCAAAGTACGAGAAATTGGCCCTGCTCCGCTTTATTAA

Coding sequence (CDS)

ATGTCACTAGTTCCAGTCTCACAGCTACTGATTAACTTCCTTCACCAGCTTCTAATTGAGAAATTACCCATCTCAGGTCACACCTATGATACATTGAATCGCGGGATTGCGAAAGAATCTCACGCTAGAGTTAATCTATCGTTGCTTAGCTTCCTCGGGATGCGTTCCACCGGACCACACTCGTCGACCTCCGATCGAGCTACGAGCACGAGTAGAGATTCAAAAGCAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAGCAATGAAGGCAATAATAAATACAAAAGTTGCGGTCAAAAAGAGCCATGATGGGCCCCAAGAGAGAGAATGCGATAAGGATAACGAGTCGCGGCTCGCCAAGTGGGCGCGGGAGGCTGCGGGCAAGTGCTTGGTAGGCCAACGACCTAGTGAACAGGCGAGACACTCGATGAAAGAAGGCACACCGAGCAAAGTACGAGAAATTGGCCCTGCTCCGCTTTATTAA

Protein sequence

MSLVPVSQLLINFLHQLLIEKLPISGHTYDTLNRGIAKESHARVNLSLLSFLGMRSTGPHSSTSDRATSTSRDSKAGSRIPSISTGEAAMKAIINTKVAVKKSHDGPQERECDKDNESRLAKWAREAAGKCLVGQRPSEQARHSMKEGTPSKVREIGPAPLY

Homology

The following BLAST results are available for this feature:

BLAST of Tan0003478.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003478.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003478.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003478.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0003478	Tan0003478	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0003478.1-exon	Tan0003478.1-exon-LG06:5273225..5273439	exon
Tan0003478.1-exon	Tan0003478.1-exon-LG06:5273590..5273680	exon
Tan0003478.1-exon	Tan0003478.1-exon-LG06:5273897..5274079	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0003478.1-cds	Tan0003478.1-cds-LG06:5273225..5273439	CDS
Tan0003478.1-cds	Tan0003478.1-cds-LG06:5273590..5273680	CDS
Tan0003478.1-cds	Tan0003478.1-cds-LG06:5273897..5274079	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0003478.1	Tan0003478.1-protein	polypeptide